ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469817.1| Oryza sativa (japonica cultivar-group), mRNA 58 4e-05
2ref|XM_469818.1| Oryza sativa (japonica cultivar-group), mRNA 58 4e-05
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 4e-05
4gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genom... 58 4e-05
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
6dbj|AK099399.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 4e-05
7gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence 56 1e-04
8emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chrom... 48 0.036
9gb|AC008140.11| Drosophila melanogaster clone BACR15J23, complet... 44 0.56
10gb|AC009219.7| Drosophila melanogaster clone BACR32N16, complete... 44 0.56
11gb|AC076971.25| Homo sapiens 3 BAC RP11-525O8 (Roswell Park Canc... 44 0.56
12ref|NM_169372.1| Drosophila melanogaster CG6608-RB, transcript v... 44 0.56
13ref|NM_141777.2| Drosophila melanogaster CG6608-RA, transcript v... 44 0.56
14gb|AY069712.1| Drosophila melanogaster LP01207 full length cDNA 44 0.56
15gb|AE003689.2| Drosophila melanogaster chromosome 3R, section 27... 44 0.56
16emb|Z75550.1|CET22C1 Caenorhabditis elegans Cosmid T22C1, comple... 44 0.56
17emb|BX571710.12| Zebrafish DNA sequence from clone DKEY-4A14 in ... 42 2.2
18gb|AC010864.11| Homo sapiens chromosome 10 clone RP11-351D16, co... 42 2.2
19emb|AL935037.9| Zebrafish DNA sequence from clone CH211-188E8 in... 42 2.2
20emb|BX088571.5| Zebrafish DNA sequence from clone CH211-208H7 in... 42 2.2
21dbj|AP000766.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
22gb|AC169501.2| Mus musculus BAC clone RP24-445O18 from chromosom... 40 8.8
23gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
24gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
25gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.8
26gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome... 40 8.8
27gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 8.8
28gb|AC131712.3| Mus musculus BAC clone RP23-193A5 from 17, comple... 40 8.8
29emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 8.8
30emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4,... 40 8.8
31gb|AC027807.6| Homo sapiens chromosome 15, clone RP11-342A23, co... 40 8.8
32gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23,... 40 8.8
33gb|AC136143.4| Papio anubis clone rp41-5m22, complete sequence 40 8.8
34gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park C... 40 8.8
35gb|AC104387.5| Homo sapiens chromosome 11, clone CTD-2566K14, co... 40 8.8
36gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, com... 40 8.8
37gb|CP000249.1| Frankia sp. CcI3, complete genome 40 8.8
38gb|AC145875.3| Pan troglodytes BAC clone RP43-6O8 from chromosom... 40 8.8
39dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
41gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell... 40 8.8
42gb|AC103965.5| Homo sapiens chromosome 15, clone CTD-2071L7, com... 40 8.8
43gb|AC129223.5| Mus musculus BAC clone RP24-535L7 from 9, complet... 40 8.8
44gb|AC134590.5| Mus musculus BAC clone RP23-368K22 from 9, comple... 40 8.8
45emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chro... 40 8.8
46emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chr... 40 8.8 
>ref|XM_469817.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 930

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 346 tattcttggaagctagtcttgtagcatctctacttcaaggaaatgaagccagtggtt 402
           |||||||||||| ||||||  |||||| ||| ||||||||||| ||| |||||||||
Sbjct: 386 tattcttggaagttagtctcatagcatttctgcttcaaggaaacgaaaccagtggtt 442



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 422 tttgttatctctgtagccgtagccagtgctgatgtattgctcaaga 467
           ||||||||||||| ||| ||||    ||||||||||||||||||||
Sbjct: 463 tttgttatctctggagctgtagttgctgctgatgtattgctcaaga 508
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>ref|XM_469818.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1948

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 346 tattcttggaagctagtcttgtagcatctctacttcaaggaaatgaagccagtggtt 402
           |||||||||||| ||||||  |||||| ||| ||||||||||| ||| |||||||||
Sbjct: 386 tattcttggaagttagtctcatagcatttctgcttcaaggaaacgaaaccagtggtt 442



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 422 tttgttatctctgtagccgtagccagtgctgatgtattgctcaag 466
           ||||||||||||| ||| ||||    |||||||||||||||||||
Sbjct: 463 tttgttatctctggagctgtagttgctgctgatgtattgctcaag 507
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 346      tattcttggaagctagtcttgtagcatctctacttcaaggaaatgaagccagtggtt 402
                |||||||||||| ||||||  |||||| ||| ||||||||||| ||| |||||||||
Sbjct: 30918614 tattcttggaagttagtctcatagcatttctgcttcaaggaaacgaaaccagtggtt 30918558



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 422      tttgttatctctgtagccgtagccagtgctgatgtattgctcaag 466
                ||||||||||||| ||| ||||    |||||||||||||||||||
Sbjct: 30918537 tttgttatctctggagctgtagttgctgctgatgtattgctcaag 30918493
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>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence, complete
             sequence
          Length = 122496

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 346   tattcttggaagctagtcttgtagcatctctacttcaaggaaatgaagccagtggtt 402
             |||||||||||| ||||||  |||||| ||| ||||||||||| ||| |||||||||
Sbjct: 24476 tattcttggaagttagtctcatagcatttctgcttcaaggaaacgaaaccagtggtt 24532



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 422   tttgttatctctgtagccgtagccagtgctgatgtattgctcaag 466
             ||||||||||||| ||| ||||    |||||||||||||||||||
Sbjct: 24553 tttgttatctctggagctgtagttgctgctgatgtattgctcaag 24597
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 346      tattcttggaagctagtcttgtagcatctctacttcaaggaaatgaagccagtggtt 402
                |||||||||||| ||||||  |||||| ||| ||||||||||| ||| |||||||||
Sbjct: 31009137 tattcttggaagttagtctcatagcatttctgcttcaaggaaacgaaaccagtggtt 31009081



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                             
Query: 422      tttgttatctctgtagccgtagccagtgctgatgtattgctcaag 466
                ||||||||||||| ||| ||||    |||||||||||||||||||
Sbjct: 31009060 tttgttatctctggagctgtagttgctgctgatgtattgctcaag 31009016
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>dbj|AK099399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000O17, full
           insert sequence
          Length = 1344

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                    
Query: 346 tattcttggaagctagtcttgtagcatctctacttcaaggaaatgaagccagtggtt 402
           |||||||||||| ||||||  |||||| ||| ||||||||||| ||| |||||||||
Sbjct: 519 tattcttggaagttagtctcatagcatttctgcttcaaggaaacgaaaccagtggtt 575



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 422 tttgttatctctgtagccgtagccagtgctgatgtattgctcaaga 467
           ||||||||||||| ||| ||||    ||||||||||||||||||||
Sbjct: 596 tttgttatctctggagctgtagttgctgctgatgtattgctcaaga 641
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>gb|AF503433.1| Sorghum bicolor BAC 170F8, complete sequence
          Length = 142376

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                         
Query: 339   ggaatgctattcttggaagctagtcttgtagcatctctacttcaaggaaatgaagccagt 398
             |||||| |||||||||||   |||||  |||| | |||||||||||||||||| ||||||
Sbjct: 86413 ggaatgttattcttggaaatcagtctcatagcctttctacttcaaggaaatgatgccagt 86354

                 
Query: 399   ggtt 402
             ||||
Sbjct: 86353 ggtt 86350
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>emb|AL136116.11| Human DNA sequence from clone RP1-95L4 on chromosome 6 Contains the 3'
             end of the gene for androgen induced protein (AIG-1)
             (CGI-103) (includes FLJ10485), a pseudogene similar to
             actin genes, a ribosomal protein L31 (RPL31) pseudogene
             and a pseudogene similar to hypothetical proteins PRO2207
             and similar to presenilins associated rhomboid-like
             protein, complete sequence
          Length = 100815

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 506   tgaggatgacatggaaggaggaataaat 533
             ||||||||||||||||||||||| ||||
Sbjct: 60168 tgaggatgacatggaaggaggaaaaaat 60195
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>gb|AC008140.11| Drosophila melanogaster clone BACR15J23, complete sequence
          Length = 140973

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 132  cgcgctccacctgccagccgccggac 157
            ||||||||||||||||||||| ||||
Sbjct: 4128 cgcgctccacctgccagccgctggac 4153
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>gb|AC009219.7| Drosophila melanogaster clone BACR32N16, complete sequence
          Length = 159007

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 132    cgcgctccacctgccagccgccggac 157
              ||||||||||||||||||||| ||||
Sbjct: 103336 cgcgctccacctgccagccgctggac 103311
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>gb|AC076971.25| Homo sapiens 3 BAC RP11-525O8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75323

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 316   gtggtcctcctccttgtcatct 337
             ||||||||||||||||||||||
Sbjct: 19438 gtggtcctcctccttgtcatct 19417
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>ref|NM_169372.1| Drosophila melanogaster CG6608-RB, transcript variant B (CG6608),
           mRNA
          Length = 2167

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 132 cgcgctccacctgccagccgccggac 157
           ||||||||||||||||||||| ||||
Sbjct: 852 cgcgctccacctgccagccgctggac 877
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>ref|NM_141777.2| Drosophila melanogaster CG6608-RA, transcript variant A (CG6608),
           mRNA
          Length = 2047

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 132 cgcgctccacctgccagccgccggac 157
           ||||||||||||||||||||| ||||
Sbjct: 732 cgcgctccacctgccagccgctggac 757
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>gb|AY069712.1| Drosophila melanogaster LP01207 full length cDNA
          Length = 1664

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 132 cgcgctccacctgccagccgccggac 157
           ||||||||||||||||||||| ||||
Sbjct: 338 cgcgctccacctgccagccgctggac 363
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>gb|AE003689.2| Drosophila melanogaster chromosome 3R, section 27 of 118 of the
             complete sequence
          Length = 215899

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 132   cgcgctccacctgccagccgccggac 157
             ||||||||||||||||||||| ||||
Sbjct: 10430 cgcgctccacctgccagccgctggac 10405
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>emb|Z75550.1|CET22C1 Caenorhabditis elegans Cosmid T22C1, complete sequence
          Length = 39511

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 524   aggaataaatttgattgttcga 545
             ||||||||||||||||||||||
Sbjct: 25160 aggaataaatttgattgttcga 25139
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>emb|BX571710.12| Zebrafish DNA sequence from clone DKEY-4A14 in linkage group 1, complete
              sequence
          Length = 145840

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 606    catgttacattctaagtgaactgca 630
              |||||||||||||||||| ||||||
Sbjct: 131012 catgttacattctaagtggactgca 130988
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>gb|AC010864.11| Homo sapiens chromosome 10 clone RP11-351D16, complete sequence
          Length = 205794

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 505   ctgaggatgacatggaaggag 525
             |||||||||||||||||||||
Sbjct: 24310 ctgaggatgacatggaaggag 24290
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>emb|AL935037.9| Zebrafish DNA sequence from clone CH211-188E8 in linkage group 1,
             complete sequence
          Length = 141034

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 606   catgttacattctaagtgaactgca 630
             |||||||||||||||||| ||||||
Sbjct: 76066 catgttacattctaagtggactgca 76090
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>emb|BX088571.5| Zebrafish DNA sequence from clone CH211-208H7 in linkage group 1,
             complete sequence
          Length = 214441

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 606   catgttacattctaagtgaactgca 630
             |||||||||||||||||| ||||||
Sbjct: 72293 catgttacattctaagtggactgca 72269
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>dbj|AP000766.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-819C21, complete
            sequence
          Length = 118489

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 103  tccctcactcttgtcctggccctga 127
            ||||||||||| |||||||||||||
Sbjct: 8124 tccctcactctagtcctggccctga 8148
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>gb|AC169501.2| Mus musculus BAC clone RP24-445O18 from chromosome 17, complete
             sequence
          Length = 202078

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 523   gaggaataaatttgattgtt 542
             ||||||||||||||||||||
Sbjct: 35517 gaggaataaatttgattgtt 35536
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>gb|AC137609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0010H19,
              complete sequence
          Length = 162902

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    attaatttgttatctctgta 436
              ||||||||||||||||||||
Sbjct: 103259 attaatttgttatctctgta 103278
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>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02,
              complete sequence
          Length = 147407

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    ttgcatttgtactatttgtt 216
              ||||||||||||||||||||
Sbjct: 119069 ttgcatttgtactatttgtt 119050
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>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20,
              complete sequence
          Length = 162434

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    ttgcatttgtactatttgtt 216
              ||||||||||||||||||||
Sbjct: 160602 ttgcatttgtactatttgtt 160583
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>gb|AC137003.3| Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone
             OSJNBb0069G11, complete sequence
          Length = 174844

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   attaatttgttatctctgta 436
             ||||||||||||||||||||
Sbjct: 37046 attaatttgttatctctgta 37065
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 116     tcctggccctgaccaccgcgctcc 139
               |||||||||||||||| |||||||
Sbjct: 2640899 tcctggccctgaccacggcgctcc 2640922
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>gb|AC131712.3| Mus musculus BAC clone RP23-193A5 from 17, complete sequence
          Length = 218758

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   gaggaataaatttgattgtt 542
             ||||||||||||||||||||
Sbjct: 48234 gaggaataaatttgattgtt 48215
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    ttgcatttgtactatttgtt 216
              ||||||||||||||||||||
Sbjct: 289697 ttgcatttgtactatttgtt 289716
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>emb|AL606625.3|OSJN00039 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032I19,
              complete sequence
          Length = 145383

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 42     gctaccctctgcttcgccaccggc 65
              |||||||||| |||||||||||||
Sbjct: 106096 gctaccctcttcttcgccaccggc 106073
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>gb|AC027807.6| Homo sapiens chromosome 15, clone RP11-342A23, complete sequence
          Length = 181327

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   tcactgaggatgacatggaa 521
             ||||||||||||||||||||
Sbjct: 16947 tcactgaggatgacatggaa 16966
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>gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23, complete sequence
          Length = 86113

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   aagaatcagttttgggctgc 483
             ||||||||||||||||||||
Sbjct: 54012 aagaatcagttttgggctgc 54031
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>gb|AC136143.4| Papio anubis clone rp41-5m22, complete sequence
          Length = 186148

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    tggctgggctccctcactct 113
             ||||||||||||||||||||
Sbjct: 61154 tggctgggctccctcactct 61135
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>gb|AC073917.19| Homo sapiens 12q BAC RP11-415D21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163836

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    tgccctgtggtggctgggctccct 107
             ||||||||||||||||||| ||||
Sbjct: 64074 tgccctgtggtggctgggccccct 64051
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>gb|AC104387.5| Homo sapiens chromosome 11, clone CTD-2566K14, complete sequence
          Length = 159765

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 515    catggaaggaggaataaatt 534
              ||||||||||||||||||||
Sbjct: 108382 catggaaggaggaataaatt 108363
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>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence
          Length = 175749

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    aagaatcagttttgggctgc 483
              ||||||||||||||||||||
Sbjct: 126971 aagaatcagttttgggctgc 126990
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 81      gcgtgccctgtggtggctgg 100
               ||||||||||||||||||||
Sbjct: 1982467 gcgtgccctgtggtggctgg 1982448
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>gb|AC145875.3| Pan troglodytes BAC clone RP43-6O8 from chromosome 7, complete sequence
          Length = 179919

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   aagaatcagttttgggctgc 483
             ||||||||||||||||||||
Sbjct: 14481 aagaatcagttttgggctgc 14500
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 42       gctaccctctgcttcgccaccggc 65
                |||||||||| |||||||||||||
Sbjct: 16021883 gctaccctcttcttcgccaccggc 16021860
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 197      ttgcatttgtactatttgtt 216
                ||||||||||||||||||||
Sbjct: 23056589 ttgcatttgtactatttgtt 23056570



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 417      attaatttgttatctctgta 436
                ||||||||||||||||||||
Sbjct: 10420226 attaatttgttatctctgta 10420245
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>gb|AC073532.18|AC073532 Homo sapiens 12 BAC RP11-150F20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 143759

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    tgccctgtggtggctgggctccct 107
             ||||||||||||||||||| ||||
Sbjct: 47078 tgccctgtggtggctgggccccct 47055
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>gb|AC103965.5| Homo sapiens chromosome 15, clone CTD-2071L7, complete sequence
          Length = 94879

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   tcactgaggatgacatggaa 521
             ||||||||||||||||||||
Sbjct: 93928 tcactgaggatgacatggaa 93947
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>gb|AC129223.5| Mus musculus BAC clone RP24-535L7 from 9, complete sequence
          Length = 150462

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   ctgggctccctcactcttgt 116
            ||||||||||||||||||||
Sbjct: 7262 ctgggctccctcactcttgt 7281
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>gb|AC134590.5| Mus musculus BAC clone RP23-368K22 from 9, complete sequence
          Length = 180271

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 97     ctgggctccctcactcttgt 116
              ||||||||||||||||||||
Sbjct: 137671 ctgggctccctcactcttgt 137690
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>emb|CR938722.3| Pig DNA sequence from clone CH242-150C11 on chromosome 4, complete
              sequence
          Length = 177720

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    tgaggatgacatggaaggag 525
              ||||||||||||||||||||
Sbjct: 111581 tgaggatgacatggaaggag 111562
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>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete
              sequence
          Length = 208153

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 505    ctgaggatgacatggaagga 524
              ||||||||||||||||||||
Sbjct: 126984 ctgaggatgacatggaagga 126965


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,855,872
Number of Sequences: 3902068
Number of extensions: 5855872
Number of successful extensions: 103824
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103463
Number of HSP's gapped (non-prelim): 354
length of query: 642
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 619
effective length of database: 17,143,297,704
effective search space: 10611701278776
effective search space used: 10611701278776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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