>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 748

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 20/62 (32%), Positives = 25/62 (40%)
 Frame = -3

Query: 267 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 88
           ASL  G L Y+ +L SHS     +   L  +      YY LF  + L G     L    S
Sbjct: 236 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNS 295

Query: 87  FI 82
            I
Sbjct: 296 SI 297

>CCSA_PINTH (P41650) Cytochrome c biogenesis protein ccsA|
          Length = 320

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 31/97 (31%), Positives = 39/97 (40%)
 Frame = -3

Query: 327 VFVTQADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYA 148
           +F+T   ILA  S +    V  +  GTL YR    S S G+ +    L   G        
Sbjct: 2   IFITLEHILAHISFSLILVVTLIYWGTLVYRIEGLSSSGGKGMIVTFLCTTG-------L 54

Query: 147 LFKGWLLLGKPPGCLCTPTSFITERSFRGLSW*SGLF 37
           L   WL  G        P S + E SF  LSW S +F
Sbjct: 55  LINRWLYSGH------LPLSNLYE-SFMFLSWSSSVF 84

>NHR71_CAEEL (Q9GTD4) Nuclear hormone receptor family member nhr-71|
          Length = 579

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 177 CAEDERG*AICRSCGMSKCIGRGAFRLRGKQPRK 278
           C  D  G   CRSC  +KCI  G  ++   QPR+
Sbjct: 53  CLIDPDGRCACRSCRFTKCIEAG-MKIGAVQPRR 85

>SPRT_VIBVY (Q7MHK4) Protein sprT|
          Length = 168

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 321 VTQADILASASSTPAFAVASL*GGTLPYRC 232
           + Q   L  A++T  FAVAS+ G T  YRC
Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129

>SPRT_VIBVU (Q8DCA5) Protein sprT|
          Length = 168

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 321 VTQADILASASSTPAFAVASL*GGTLPYRC 232
           + Q   L  A++T  FAVAS+ G T  YRC
Sbjct: 100 IMQGVFLLPANTTHQFAVASVQGKTFQYRC 129

>TTC9_HUMAN (Q92623) Tetratricopeptide repeat protein 9 (TPR repeat protein 9)|
           (Fragment)
          Length = 336

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 25  SSRGKQPGSPAKAPK*PLSDKGGGGAKTAR-RFA*KQPPFKECVIAH*SSALALKMNGAK 201
           S R   PG  +  P+ P   +GGG  + AR R A + P  +    A  +++ +   NG+ 
Sbjct: 5   SPRSASPGPASTGPRHPQVAEGGGRERAARSREAGEGPASEAAAAAAGAASGSSGENGSA 64

Query: 202 RSAEAVGC 225
               A GC
Sbjct: 65  GRQTAAGC 72

>CLAT_PIG (P13222) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 640

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -3

Query: 267 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 88
           A+L  G L Y+ +L SHS     +   L  +      YY LF  + L G     L    S
Sbjct: 128 ANLISGVLSYKALLDSHSIPIDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQKS 187

Query: 87  FI 82
            +
Sbjct: 188 SV 189

>URIC_DROSU (O44111) Uricase (EC 1.7.3.3) (Urate oxidase) (Fragment)|
          Length = 339

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -3

Query: 303 LASASSTPAFAVASL*GGTLPYRCILTSHSFGR-SLSPVHLQRKG 172
           L   SS      ASL G   P++  +T H +G+ ++  +H+ RKG
Sbjct: 1   LRQPSSASNRTAASLDGQETPFQYEITDHGYGKDAVKVLHVSRKG 45

>CLAT_RAT (P32738) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)|
           (Choline acetylase) (ChAT)
          Length = 639

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -3

Query: 267 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 88
           A L  G L Y+ +L SHS     +   L  +      YY LF  + L G     L    S
Sbjct: 127 ACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVAQKS 186

Query: 87  FI 82
            I
Sbjct: 187 SI 188

>NHR35_CAEEL (Q17771) Nuclear hormone receptor family member nhr-35|
          Length = 542

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 168 ERPCAEDERG*AICRSCGMSKCIGRG 245
           E  C  D+   A+CR C   KCI  G
Sbjct: 116 ESKCEIDKHNRAVCRYCRFMKCISSG 141

>CO9_BOVIN (Q3MHN2) Complement component C9 precursor|
          Length = 548

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 303 LASASSTPAFAVASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKG 136
           L  A  TP++  A   G  LP  C ++S S      P   Q   +RS+  +  F G
Sbjct: 18  LLRAGPTPSYDPAERQGTPLPIDCRMSSWSEWSKCDPCLKQMFRSRSIEIFGQFNG 73

>Y129_TREPA (O83166) Hypothetical protein TP0129|
          Length = 158

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 159 SYYALFKGWLLLGKPPGCLCTPTSFI 82
           SY     G LLLG+ P CLC P++ +
Sbjct: 115 SYRRTCCGLLLLGRRPCCLCPPSAHL 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,023,417
Number of Sequences: 219361
Number of extensions: 853855
Number of successful extensions: 1875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)