ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26b14 |
|---|---|
| Clone Library Name | barley_pub |
>YLIJ_SHIFL (P0ACA9) Hypothetical GST-like protein yliJ| Length = 208 Score = 33.1 bits (74), Expect = 0.86 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%) Frame = +1 Query: 196 PLLVDASTGVMMYESGDIVKYLFRQYGQGK----SPSFGLLESTIFTGWV-PTLLRAGRG 360 PLL D + ++++ES IV+YL QYGQ + SP+ E+ + W TL A RG Sbjct: 54 PLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPA-RRAEAEKWMDWANQTLSNAHRG 112 Query: 361 MTM 369 + M Sbjct: 113 ILM 115 Score = 29.6 bits (65), Expect = 9.5 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +1 Query: 403 LELFSIENNTYARIVREALCELELPY--VLQNVGEGSSKMSSLLSIAGSKQVPYLMDPNT 576 + L+ N+T + V L ELELPY +L G + + L++ + VP L D + Sbjct: 2 ITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDES 61 Query: 577 GFRSGDHKTILSYLFQQY 630 + I+ YL QY Sbjct: 62 DLILWESNAIVRYLAAQY 79
>YLIJ_ECOLI (P0ACA7) Hypothetical GST-like protein yliJ| Length = 208 Score = 33.1 bits (74), Expect = 0.86 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%) Frame = +1 Query: 196 PLLVDASTGVMMYESGDIVKYLFRQYGQGK----SPSFGLLESTIFTGWV-PTLLRAGRG 360 PLL D + ++++ES IV+YL QYGQ + SP+ E+ + W TL A RG Sbjct: 54 PLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPA-RRAEAEKWMDWANQTLSNAHRG 112 Query: 361 MTM 369 + M Sbjct: 113 ILM 115 Score = 29.6 bits (65), Expect = 9.5 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +1 Query: 403 LELFSIENNTYARIVREALCELELPY--VLQNVGEGSSKMSSLLSIAGSKQVPYLMDPNT 576 + L+ N+T + V L ELELPY +L G + + L++ + VP L D + Sbjct: 2 ITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDES 61 Query: 577 GFRSGDHKTILSYLFQQY 630 + I+ YL QY Sbjct: 62 DLILWESNAIVRYLAAQY 79
>YLIJ_ECOL6 (P0ACA8) Hypothetical GST-like protein yliJ| Length = 208 Score = 33.1 bits (74), Expect = 0.86 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%) Frame = +1 Query: 196 PLLVDASTGVMMYESGDIVKYLFRQYGQGK----SPSFGLLESTIFTGWV-PTLLRAGRG 360 PLL D + ++++ES IV+YL QYGQ + SP+ E+ + W TL A RG Sbjct: 54 PLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPA-RRAEAEKWMDWANQTLSNAHRG 112 Query: 361 MTM 369 + M Sbjct: 113 ILM 115 Score = 29.6 bits (65), Expect = 9.5 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Frame = +1 Query: 403 LELFSIENNTYARIVREALCELELPY--VLQNVGEGSSKMSSLLSIAGSKQVPYLMDPNT 576 + L+ N+T + V L ELELPY +L G + + L++ + VP L D + Sbjct: 2 ITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDES 61 Query: 577 GFRSGDHKTILSYLFQQY 630 + I+ YL QY Sbjct: 62 DLILWESNAIVRYLAAQY 79
>GLRX3_ECOLI (P0AC62) Glutaredoxin-3 (Grx3)| Length = 82 Score = 32.0 bits (71), Expect = 1.9 Identities = 11/57 (19%), Positives = 29/57 (50%) Frame = +1 Query: 43 LQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVRKIGGKEQFPLLVDA 213 +++Y E CP+C R + ++ +S + P + + +++++ G + +DA Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA 59
>GLRX3_ECOL6 (P0AC63) Glutaredoxin-3 (Grx3)| Length = 82 Score = 32.0 bits (71), Expect = 1.9 Identities = 11/57 (19%), Positives = 29/57 (50%) Frame = +1 Query: 43 LQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVRKIGGKEQFPLLVDA 213 +++Y E CP+C R + ++ +S + P + + +++++ G + +DA Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA 59
>GLRX3_ECO57 (P0AC64) Glutaredoxin-3 (Grx3)| Length = 82 Score = 32.0 bits (71), Expect = 1.9 Identities = 11/57 (19%), Positives = 29/57 (50%) Frame = +1 Query: 43 LQLYEFEACPFCRRVREAMTELDLSAEVYPCPKGSLRHRDVVRKIGGKEQFPLLVDA 213 +++Y E CP+C R + ++ +S + P + + +++++ G + +DA Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDA 59
>EPLIN_MOUSE (Q9ERG0) Epithelial protein lost in neoplasm (mEPLIN)| Length = 753 Score = 31.2 bits (69), Expect = 3.3 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -1 Query: 387 RTSFAPHCHPSSGSKKSRHPSCENCTLKEAKRRALSLSILSEQVFHNISTFIHHDTSTCI 208 RTS P PS +KK + P+ E+C + + + ++QVFH IS F S C Sbjct: 364 RTSSLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFH-ISCF---RCSYCN 419 Query: 207 NK 202 NK Sbjct: 420 NK 421
>SSPA_HAEDU (Q7VLK4) Stringent starvation protein A homolog| Length = 214 Score = 31.2 bits (69), Expect = 3.3 Identities = 20/76 (26%), Positives = 38/76 (50%) Frame = +1 Query: 403 LELFSIENNTYARIVREALCELELPYVLQNVGEGSSKMSSLLSIAGSKQVPYLMDPNTGF 582 + LFS +N+ Y+ VR L E +PY L+N+ + L + +P L+D + Sbjct: 11 MSLFSDKNDIYSHQVRIVLAEKGVPYELENINPNTIS-EDFLELNPYANIPTLVDRDLVL 69 Query: 583 RSGDHKTILSYLFQQY 630 + + I+ YL +++ Sbjct: 70 FNS--RIIMEYLDERF 83
>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)| (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite motif protein 33) Length = 1127 Score = 30.8 bits (68), Expect = 4.3 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 321 HRMGAYSSSSRKRDDNVEQSWCGTCREAGTLL 416 HR +DD+ + WC C+ G LL Sbjct: 869 HRSARIGGDGNNKDDDPNEDWCAVCQNGGDLL 900
>MRAW_MYCTU (P65429) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 344 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = -2 Query: 461 QRASRTILA*VLFSIEKSSSFSAGTAPALLHIVIPLPARRRVGTHPVK 318 +R +R I A ++ K+ S ALL+ IP PA RRVG HP K Sbjct: 176 ERFARRIAAGIVRRRAKTPFTSTAELVALLYQAIPAPA-RRVGGHPAK 222
>MRAW_MYCBO (P65430) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 344 Score = 30.8 bits (68), Expect = 4.3 Identities = 20/48 (41%), Positives = 26/48 (54%) Frame = -2 Query: 461 QRASRTILA*VLFSIEKSSSFSAGTAPALLHIVIPLPARRRVGTHPVK 318 +R +R I A ++ K+ S ALL+ IP PA RRVG HP K Sbjct: 176 ERFARRIAAGIVRRRAKTPFTSTAELVALLYQAIPAPA-RRVGGHPAK 222
>GSTF5_ARATH (P42769) Glutathione S-transferase PM239X14 (EC 2.5.1.18) (GST| class-phi) Length = 218 Score = 30.8 bits (68), Expect = 4.3 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%) Frame = +1 Query: 37 LTLQLYEFEACPFCRRVREAMTELDLSAEVYPCP--KGSLRHRDVVRKIGGKEQFPLLVD 210 +T++LY +RV E+ + ++ P KG + + P+L D Sbjct: 2 VTVKLYGMAYSTCTKRVYTTAKEIGVDVKIVPVDLMKGEHKEPAYLDNYHPFGVIPVLED 61 Query: 211 ASTGVMMYESGDIVKYLFRQYGQGKS 288 G +YES I +YL +YG+G S Sbjct: 62 ED-GTKIYESRAISRYLVAKYGKGSS 86
>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)| (Tripartite motif protein 33) Length = 1142 Score = 30.8 bits (68), Expect = 4.3 Identities = 10/32 (31%), Positives = 14/32 (43%) Frame = +3 Query: 321 HRMGAYSSSSRKRDDNVEQSWCGTCREAGTLL 416 HR +DD+ + WC C+ G LL Sbjct: 884 HRSARIGGDGNSKDDDPNEDWCAVCQNGGDLL 915
>PGES2_MACFA (Q9N0A4) Prostaglandin E synthase 2 (EC 5.3.99.3) (Microsomal| prostaglandin E synthase 2) (mPGES-2) [Contains: Prostaglandin E synthase 2 truncated form] Length = 377 Score = 30.8 bits (68), Expect = 4.3 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 28 TSALTLQLYEFEACPFCRRVR 90 +S L L LY+++ CPFC +VR Sbjct: 97 SSRLQLTLYQYKTCPFCSKVR 117
>PGES2_HUMAN (Q9H7Z7) Prostaglandin E synthase 2 (EC 5.3.99.3) (Microsomal| prostaglandin E synthase 2) (mPGES-2) [Contains: Prostaglandin E synthase 2 truncated form] Length = 377 Score = 30.8 bits (68), Expect = 4.3 Identities = 11/21 (52%), Positives = 16/21 (76%) Frame = +1 Query: 28 TSALTLQLYEFEACPFCRRVR 90 +S L L LY+++ CPFC +VR Sbjct: 97 SSRLQLTLYQYKTCPFCSKVR 117
>SPT6H_CAEEL (P34703) Suppressor of Ty 6 homolog (Abnormal embryogenesis protein| 5) Length = 1521 Score = 30.4 bits (67), Expect = 5.6 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = -2 Query: 344 RRVGTHPVKIVLSRRPKEGLFPCPYCLNRYFTISPLSYIMTPVLASTRSGNCSFPPI 174 R+V +L ++GLF CP C + FT S I +L +R G C P+ Sbjct: 1142 RKVDKDAADSMLPDVGEDGLFTCPCC--KSFTSSAPGGIQEHMLGDSRQGGCPGTPV 1196
>YTX1_XENLA (P14380) Transposon TX1 hypothetical 82 kDa protein (ORF 1)| Length = 775 Score = 30.4 bits (67), Expect = 5.6 Identities = 19/73 (26%), Positives = 32/73 (43%) Frame = +3 Query: 366 NVEQSWCGTCREAGTLLN*E*HLRKDCPRGSL*IGAPLRSPERGRGVVEDEFAAKHSRF* 545 + E+ C C+ G H R+ CP+G + AP+ +P A+ + + Sbjct: 236 STEEVRCFLCKNLG-------HTRQSCPKGQIKTTAPVPAPS----------ASNKTSYP 278 Query: 546 AGAVSDGSKHWVS 584 AG +S GS +S Sbjct: 279 AGTISAGSSKGIS 291
>PGES2_MOUSE (Q8BWM0) Prostaglandin E synthase 2 (EC 5.3.99.3) (Microsomal| prostaglandin E synthase 2) (mPGES-2) (GATE-binding factor 1) (GBF-1) [Contains: Prostaglandin E synthase 2 truncated form] Length = 384 Score = 30.4 bits (67), Expect = 5.6 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +1 Query: 28 TSALTLQLYEFEACPFCRRVR 90 +++L L LY+++ CPFC +VR Sbjct: 96 SNSLQLTLYQYKTCPFCSKVR 116
>HEMN_RHOSH (P95651) Oxygen-independent coproporphyrinogen III oxidase (EC| 1.3.99.22) (Coproporphyrinogenase) (Coprogen oxidase) Length = 452 Score = 30.4 bits (67), Expect = 5.6 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%) Frame = +1 Query: 382 GAVPAEKLELFSIENNTYARIVREALCE--LELPYVLQNVGEGSSKMSSLLSIAGSKQVP 555 G +PA + + E+ + R + +CE L+LP + GE + M L+ A +K P Sbjct: 352 GRLPAYRGHRMTDEDYLHGRAIEMIMCEFRLDLPALRARFGEAAETMVPRLTEAAAKFAP 411 Query: 556 YLMDPNTGFRS 588 ++ G S Sbjct: 412 FITVDEAGSMS 422
>DSVB_DESGI (P94694) Sulfite reductase, dissimilatory-type beta subunit (EC| 1.8.99.3) (Desulfoviridin beta subunit) (Hydrogensulfite reductase beta subunit) (Fragment) Length = 262 Score = 30.0 bits (66), Expect = 7.3 Identities = 13/32 (40%), Positives = 21/32 (65%) Frame = +3 Query: 597 QDDTVLLVSAVLRGRLACLSNLCKSVHTSRIG 692 ++ T + + A++R LAC N+C +VH S IG Sbjct: 171 EEFTSMRLPAIVRVSLACCINMCGAVHCSDIG 202
>FUMC_BACAN (Q81SA0) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)| Length = 462 Score = 29.6 bits (65), Expect = 9.5 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -1 Query: 384 TSFAPHCHPSSGSKKSRHPSCENCTLKEAKRRALSLSILSEQVFHNI 244 T+ PH + +K ++H E TLKEA AL +L+E+ F+ I Sbjct: 408 TALNPHIGYENAAKIAKHAHKEGLTLKEA---ALQSGLLTEEQFNEI 451
>MRCKG_MOUSE (Q80UW5) Serine/threonine-protein kinase MRCK gamma (EC 2.7.11.1)| (CDC42-binding protein kinase gamma) (Myotonic dystrophy kinase-related CDC42-binding kinase gamma) (Myotonic dystrophy protein kinase-like alpha) (MRCK gamma) (DMPK-like gamma Length = 1551 Score = 29.6 bits (65), Expect = 9.5 Identities = 28/112 (25%), Positives = 37/112 (33%), Gaps = 9/112 (8%) Frame = -3 Query: 694 QPIREVCTDLQRFERQASRPRSTAETSRTVSS---CDRPIETQCLDPSDTAPXXXXXXXX 524 Q ++E T +Q +RQA R AE + E Q P D P Sbjct: 756 QSLQEQLTQVQEAQRQAERRLQEAEKQSQALQQEVAELREELQARGPGDARPSTSLIPLL 815 Query: 523 XXXXSTTPLPRS------GERKGAPIHREPRGQSLRRCYSQLRRVPASLQVP 386 + + G R GA P G+ R S RVPA+ P Sbjct: 816 SFWNTEKDSAKDPGNSGEGPRSGAEAELRPEGRRSLRMGSVFPRVPAATTTP 867
>SIRT1_HUMAN (Q96EB6) NAD-dependent deacetylase sirtuin-1 (EC 3.5.1.-) (hSIRT1)| (hSIR2) (SIR2-like protein 1) Length = 747 Score = 29.6 bits (65), Expect = 9.5 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = +3 Query: 294 FWPP*EYNFHRMGAYSSSSRKRDDNVEQSWCGTCREAGT 410 F PP Y FH YS S DD + S CG+ ++GT Sbjct: 644 FLPPNRYIFHGAEVYSDS---EDDVLSSSSCGSNSDSGT 679 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 110,289,211 Number of Sequences: 219361 Number of extensions: 2470815 Number of successful extensions: 7536 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 7171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7534 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7196276819 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
