ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25m12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192495.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 558 Score = 192 bits (97), Expect = 5e-46 Identities = 127/137 (92%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 409 gtgcgcgcgctcaccaacctggccctcaaggaggccaaggacctcatcgagggcctcccc 468 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 469 aagaaggtcaaggagggtgtcagcaaggacgaggccgaggatgccaagaagcagctcgag 528 Query: 121 gccgtcggcgccaaggt 137 | |||||||||||||| Sbjct: 529 gaggtcggcgccaaggt 545
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 192 bits (97), Expect = 5e-46 Identities = 127/137 (92%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 27035541 gtgcgcgcgctcaccaacctggccctcaaggaggccaaggacctcatcgagggcctcccc 27035600 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 27035601 aagaaggtcaaggagggtgtcagcaaggacgaggccgaggatgccaagaagcagctcgag 27035660 Query: 121 gccgtcggcgccaaggt 137 | |||||||||||||| Sbjct: 27035661 gaggtcggcgccaaggt 27035677
>dbj|AP003284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0671D01 Length = 163006 Score = 192 bits (97), Expect = 5e-46 Identities = 127/137 (92%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 94372 gtgcgcgcgctcaccaacctggccctcaaggaggccaaggacctcatcgagggcctcccc 94431 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 94432 aagaaggtcaaggagggtgtcagcaaggacgaggccgaggatgccaagaagcagctcgag 94491 Query: 121 gccgtcggcgccaaggt 137 | |||||||||||||| Sbjct: 94492 gaggtcggcgccaaggt 94508
>dbj|AB022674.1| Oryza sativa (japonica cultivar-group) rpl12-2 gene for chloroplast ribosomal protein L12, complete cds Length = 2075 Score = 192 bits (97), Expect = 5e-46 Identities = 127/137 (92%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 1587 gtgcgcgcgctcaccaacctggccctcaaggaggccaaggacctcatcgagggcctcccc 1646 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 1647 aagaaggtcaaggagggtgtcagcaaggacgaggccgaggatgccaagaagcagctcgag 1706 Query: 121 gccgtcggcgccaaggt 137 | |||||||||||||| Sbjct: 1707 gaggtcggcgccaaggt 1723
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 184 bits (93), Expect = 1e-43 Identities = 138/153 (90%) Strand = Plus / Minus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 159495 gtgcgcgcgctgacgaacctggcgctcaaggaggccaaggacctcatcgagggtctcccc 159436 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||| Sbjct: 159435 aagaaggccaaggaggccgtgagcaaggaggaggccgaggaggccaagaagcagctcgag 159376 Query: 121 gccgtcggcgccaaggtcaccgtcgcctgacct 153 | |||||||||||||| | ||||||||||| Sbjct: 159375 gaggtcggcgccaaggtgtcaatcgcctgacct 159343
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06, complete sequence Length = 160907 Score = 184 bits (93), Expect = 1e-43 Identities = 138/153 (90%) Strand = Plus / Minus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 12005 gtgcgcgcgctgacgaacctggcgctcaaggaggccaaggacctcatcgagggtctcccc 11946 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||| Sbjct: 11945 aagaaggccaaggaggccgtgagcaaggaggaggccgaggaggccaagaagcagctcgag 11886 Query: 121 gccgtcggcgccaaggtcaccgtcgcctgacct 153 | |||||||||||||| | ||||||||||| Sbjct: 11885 gaggtcggcgccaaggtgtcaatcgcctgacct 11853
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 184 bits (93), Expect = 1e-43 Identities = 138/153 (90%) Strand = Plus / Minus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 28079330 gtgcgcgcgctgacgaacctggcgctcaaggaggccaaggacctcatcgagggtctcccc 28079271 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||| Sbjct: 28079270 aagaaggccaaggaggccgtgagcaaggaggaggccgaggaggccaagaagcagctcgag 28079211 Query: 121 gccgtcggcgccaaggtcaccgtcgcctgacct 153 | |||||||||||||| | ||||||||||| Sbjct: 28079210 gaggtcggcgccaaggtgtcaatcgcctgacct 28079178
>dbj|AB022673.1| Oryza sativa (japonica cultivar-group) rpl12-1 gene for chloroplast ribosomal protein L12, complete cds Length = 1944 Score = 184 bits (93), Expect = 1e-43 Identities = 138/153 (90%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 |||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||| Sbjct: 876 gtgcgcgcgctgacgaacctggcgctcaaggaggccaaggacctcatcgagggtctcccc 935 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||| Sbjct: 936 aagaaggccaaggaggccgtgagcaaggaggaggccgaggaggccaagaagcagctcgag 995 Query: 121 gccgtcggcgccaaggtcaccgtcgcctgacct 153 | |||||||||||||| | ||||||||||| Sbjct: 996 gaggtcggcgccaaggtgtcaatcgcctgacct 1028
>dbj|AK062414.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-F05, full insert sequence Length = 470 Score = 182 bits (92), Expect = 5e-43 Identities = 122/132 (92%) Strand = Plus / Plus Query: 6 cgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctccccaagaa 65 |||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct: 114 cgcgctcaccaacctggccctcaaggaggccaaggacctcatcgagggcctccccaagaa 173 Query: 66 gctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgaggccgt 125 | ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||| || Sbjct: 174 ggtcaaggagggtgtcagcaaggacgaggccgaggatgccaagaagcagctcgaggaggt 233 Query: 126 cggcgccaaggt 137 |||||||||||| Sbjct: 234 cggcgccaaggt 245
>emb|X68340.1|SCL122A S.cereale L12-2 mRNA for ribosomal protein L12 Length = 790 Score = 176 bits (89), Expect = 3e-41 Identities = 125/137 (91%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 |||||||| ||||||||||||||||| ||||| |||||||| || |||||||| ||||| Sbjct: 431 gtgcgcgcactgaccaacctggcgctgaaggaggccaaggatcttatcgaggggctccca 490 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 491 aagaagctcaaggaggccgtgagcaaggacgaggccgaggaggccaagaagcagctcgag 550 Query: 121 gccgtcggcgccaaggt 137 | |||||||||||||| Sbjct: 551 ggagtcggcgccaaggt 567
>emb|X68325.1|SCL121A S.cereale L12-1 mRNA for ribosomal protein L12 Length = 790 Score = 176 bits (89), Expect = 3e-41 Identities = 125/137 (91%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 |||||||| ||||||||||||||||| ||||| |||||||| || |||||||| ||||| Sbjct: 431 gtgcgcgcactgaccaacctggcgctgaaggaggccaaggatcttatcgaggggctccca 490 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 491 aagaagctcaaggaggccgtgagcaaggacgaggccgaggaggccaagaagcagctcgag 550 Query: 121 gccgtcggcgccaaggt 137 | |||||||||||||| Sbjct: 551 ggagtcggcgccaaggt 567
>gb|AF010581.1|AF010581 Oryza sativa ribosomal protein L12 homolog mRNA, partial cds Length = 535 Score = 174 bits (88), Expect = 1e-40 Identities = 112/120 (93%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcgagggcctcccc 60 ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 416 gtgcgcgcgctcaccaacctggccctcaaggaggccaaggacctcatcgagggcctcccc 475 Query: 61 aagaagctcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgag 120 |||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct: 476 aagaaggtcaaggagggtgtcagcaaggacgaggccgaggatgccaagaagcagctcgag 535
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 67.9 bits (34), Expect = 2e-08 Identities = 94/114 (82%) Strand = Plus / Plus Query: 25 ctcaaggacgccaaggacctcatcgagggcctccccaagaagctcaaggaggccgtcggc 84 |||||||| ||||||||||| |||||||| || ||| || |||||| | ||||| | Sbjct: 1819397 ctcaaggaggccaaggacctggtcgagggcgcgccgaaggaggtcaaggccggcgtcgcc 1819456 Query: 85 aaggacgaggccgaggacgccaagaagcagctcgaggccgtcggcgccaaggtc 138 |||| |||||||||||| ||||||| |||||||||||| |||||||||||| Sbjct: 1819457 aaggccgaggccgaggagctcaagaagaagctcgaggccgctggcgccaaggtc 1819510
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 48.1 bits (24), Expect = 0.018 Identities = 30/32 (93%) Strand = Plus / Minus Query: 13 accaacctggcgctcaaggacgccaaggacct 44 |||||||||| |||||||||||||||||||| Sbjct: 3125044 accaacctgggtctcaaggacgccaaggacct 3125013
>emb|AJ419825.1|TTH419825 Thermus thermophilus rplJ gene for ribosomal protein L10 and rplL gene for ribosomal protein L12 Length = 1725 Score = 48.1 bits (24), Expect = 0.018 Identities = 54/64 (84%) Strand = Plus / Plus Query: 68 tcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgaggccgtcg 127 ||||||||| |||| |||| | ||||||||||| ||||||| ||||||||||||| | Sbjct: 1188 tcaaggagggcgtctccaagcaggaggccgaggagatcaagaagaagctcgaggccgtgg 1247 Query: 128 gcgc 131 |||| Sbjct: 1248 gcgc 1251
>dbj|AB214972.1| Plutella xylostella hsp90 mRNA for heat shock protein 90, complete cds Length = 2523 Score = 48.1 bits (24), Expect = 0.018 Identities = 33/36 (91%) Strand = Plus / Plus Query: 73 gaggccgtcggcaaggacgaggccgaggacgccaag 108 |||| ||||||| ||||||||| ||||||||||||| Sbjct: 929 gaggacgtcggcgaggacgaggacgaggacgccaag 964
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 48.1 bits (24), Expect = 0.018 Identities = 54/64 (84%) Strand = Plus / Plus Query: 68 tcaaggaggccgtcggcaaggacgaggccgaggacgccaagaagcagctcgaggccgtcg 127 ||||||||| |||| |||| | ||||||||||| ||||||| ||||||||||||| | Sbjct: 206937 tcaaggagggcgtctccaagcaggaggccgaggagatcaagaagaagctcgaggccgtgg 206996 Query: 128 gcgc 131 |||| Sbjct: 206997 gcgc 207000
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 46.1 bits (23), Expect = 0.070 Identities = 32/35 (91%) Strand = Plus / Plus Query: 84 caaggacgaggccgaggacgccaagaagcagctcg 118 |||||| ||||| ||||||||||||||||| |||| Sbjct: 687047 caaggaagaggcagaggacgccaagaagcaactcg 687081
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 46.1 bits (23), Expect = 0.070 Identities = 41/47 (87%) Strand = Plus / Plus Query: 4 cgcgcgctgaccaacctggcgctcaaggacgccaaggacctcatcga 50 ||||||||||||| ||| | ||| ||||| |||||||||||| |||| Sbjct: 661969 cgcgcgctgaccagcctcgggctgaaggaggccaaggacctcgtcga 662015
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 46.1 bits (23), Expect = 0.070 Identities = 32/35 (91%) Strand = Plus / Plus Query: 84 caaggacgaggccgaggacgccaagaagcagctcg 118 |||||| |||||||| || |||||||||||||||| Sbjct: 3024147 caaggaagaggccgaagaagccaagaagcagctcg 3024181
>gb|AF040570.3| Amycolatopsis mediterranei rifamycin biosynthetic gene cluster Length = 109528 Score = 44.1 bits (22), Expect = 0.28 Identities = 37/42 (88%) Strand = Plus / Plus Query: 94 gccgaggacgccaagaagcagctcgaggccgtcggcgccaag 135 ||||||| ||||||| || |||||||||||| ||||||||| Sbjct: 1097 gccgaggccgccaaggagaagctcgaggccgcgggcgccaag 1138
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.28 Identities = 55/66 (83%) Strand = Plus / Plus Query: 79 gtcggcaaggacgaggccgaggacgccaagaagcagctcgaggccgtcggcgccaaggtc 138 |||| |||||| | |||||| ||||||||| |||||||||||| |||||||| ||| Sbjct: 4599204 gtcgccaaggaggcggccgacgacgccaaggccaagctcgaggccgccggcgccaccgtc 4599263 Query: 139 accgtc 144 |||||| Sbjct: 4599264 accgtc 4599269 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 96 cgaggacgccaagaagcagctcgaggccg 124 |||||||||||||||| | |||||||||| Sbjct: 2959627 cgaggacgccaagaaggaactcgaggccg 2959655
>ref|XM_361558.1| Magnaporthe grisea 70-15 hypothetical protein (MG04032.4) partial mRNA Length = 549 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 ccaagaagcagctcgaggccg 124 ||||||||||||||||||||| Sbjct: 368 ccaagaagcagctcgaggccg 388
>gb|AE009292.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 62 of 187 of the complete sequence Length = 14357 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tccagaattttaccagaattt 207 ||||||||||||||||||||| Sbjct: 9146 tccagaattttaccagaattt 9166
>gb|AE008320.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 124 of 187 of the complete sequence Length = 11235 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 187 tccagaattttaccagaattt 207 ||||||||||||||||||||| Sbjct: 5186 tccagaattttaccagaattt 5166
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 gcagctcgaggccgtcggcgc 131 ||||||||||||||||||||| Sbjct: 1554072 gcagctcgaggccgtcggcgc 1554092
>gb|AC122298.3| Mus musculus BAC clone RP23-269A11 from 12, complete sequence Length = 151332 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 cagaattttaccagaattttc 209 ||||||||||||||||||||| Sbjct: 67481 cagaattttaccagaattttc 67461
>gb|L24552.1|STMRPLJ Streptomyces coelicolor A3(2) ORF 1 gene, partial cds; and ORF 2, ribosomal protein L10 (rplJ), and ribosomal protein L12 (rplL) genes, complete cds Length = 3141 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctc 45 ||||||| ||||||| ||||| |||||||| |||||||||||| Sbjct: 2969 gtgcgcgagctgacctccctgggtctcaaggaggccaaggacctc 3013
>emb|Z49386.1|SCYJL111W S.cerevisiae chromosome X reading frame ORF YJL111w Length = 2472 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 tttgtatactctgtatcttaa 291 ||||||||||||||||||||| Sbjct: 2212 tttgtatactctgtatcttaa 2232
>emb|Z49385.1|SCYJL110C S.cerevisiae chromosome X reading frame ORF YJL110c Length = 2470 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 tttgtatactctgtatcttaa 291 ||||||||||||||||||||| Sbjct: 132 tttgtatactctgtatcttaa 152
>emb|X85021.1|SCXLTORFS S.cerevisiae DNA from left arm of chromosome X Length = 37549 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 tttgtatactctgtatcttaa 291 ||||||||||||||||||||| Sbjct: 2571 tttgtatactctgtatcttaa 2591
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 42.1 bits (21), Expect = 1.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 1 gtgcgcgcgctgaccaacctggcgctcaaggacgccaaggacctc 45 ||||||| ||||||| ||||| |||||||| |||||||||||| Sbjct: 247872 gtgcgcgagctgacctccctgggtctcaaggaggccaaggacctc 247916
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 tcggcgccaaggtcaccgtcg 145 ||||||||||||||||||||| Sbjct: 4114488 tcggcgccaaggtcaccgtcg 4114468
>ref|NM_064350.2| Caenorhabditis elegans F58G1.1 (F58G1.1) mRNA, complete cds Length = 3141 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ggacgccaagaagcagctcga 119 ||||||||||||||||||||| Sbjct: 1983 ggacgccaagaagcagctcga 2003
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 114 gctcgaggccgtcggcgccaaggtcaccg 142 ||||| ||||||||||| ||||||||||| Sbjct: 5688055 gctcggggccgtcggcggcaaggtcaccg 5688083 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 100 gacgccaagaagcagctcgaggccg 124 ||||||||||||||||| ||||||| Sbjct: 1530093 gacgccaagaagcagctggaggccg 1530117
>gb|AF081810.1|AF081810 Lymantria dispar nucleopolyhedrovirus, complete genome Length = 161046 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 64 aagctcaaggaggccgtcggcaagg 88 ||||||||||||| ||||||||||| Sbjct: 80342 aagctcaaggaggtcgtcggcaagg 80366
>dbj|D11476.1|LPVDNAP Lymantria dispar nuclear polyhedrosis virus gene for DNA polymerase, complete cds Length = 4808 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 64 aagctcaaggaggccgtcggcaagg 88 ||||||||||||| ||||||||||| Sbjct: 3071 aagctcaaggaggtcgtcggcaagg 3095
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 4.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 68 tcaaggaggccgtcggcaaggacgaggccgag 99 ||||||| |||||| |||||||||||||||| Sbjct: 2188064 tcaaggaagccgtctccaaggacgaggccgag 2188033
>ref|XM_480035.1| Oryza sativa (japonica cultivar-group), mRNA Length = 943 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 caaggaggccgtcggcaagg 88 |||||||||||||||||||| Sbjct: 294 caaggaggccgtcggcaagg 313
>ref|XM_507129.1| PREDICTED Oryza sativa (japonica cultivar-group), P0473D02.20 mRNA Length = 1093 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 caaggaggccgtcggcaagg 88 |||||||||||||||||||| Sbjct: 294 caaggaggccgtcggcaagg 313
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 aaggacgccaaggacctcatcgag 51 |||||||||||||||||| ||||| Sbjct: 2049108 aaggacgccaaggacctcgtcgag 2049085
>ref|XM_369161.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00083.4) partial mRNA Length = 1143 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 aggccgaggacgccaagaag 111 |||||||||||||||||||| Sbjct: 674 aggccgaggacgccaagaag 693
>ref|XM_802569.1| Trypanosoma cruzi strain CL Brener helicase-like protein (Tc00.1047053508645.10) partial mRNA Length = 3183 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggccgaggacgccaagaagc 112 |||||||||||||||||||| Sbjct: 655 ggccgaggacgccaagaagc 636
>gb|AC140723.16| Mus musculus chromosome 16, clone RP23-346N4, complete sequence Length = 204252 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cagaattttaccagaatttt 208 |||||||||||||||||||| Sbjct: 127260 cagaattttaccagaatttt 127241
>ref|XM_810664.1| Trypanosoma cruzi strain CL Brener helicase-like protein (Tc00.1047053506203.30) partial mRNA Length = 3162 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 ggccgaggacgccaagaagc 112 |||||||||||||||||||| Sbjct: 655 ggccgaggacgccaagaagc 636
>gb|AC098706.3| Mus musculus BAC clone RP23-1I11 from 14, complete sequence Length = 234326 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 cagaattttaccagaatttt 208 |||||||||||||||||||| Sbjct: 206975 cagaattttaccagaatttt 206956
>emb|BX248406.4| Human DNA sequence from clone DASS-390M22 on chromosome 6, complete sequence Length = 124787 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 gttccagaattttaccagaatttt 208 ||||||||||||| |||||||||| Sbjct: 109894 gttccagaatttttccagaatttt 109917
>emb|AL662789.11| Human DNA sequence from clone XXbac-254F23 on chromosome 6 contains the 5' end of the HLA-DRB1 gene for major histocompatibility complex, class II, DR beta 1, the HLA-DQA1 gene for major histocompatibility complex, class II, DQ alpha 1, the HLA-DQB1 gene for major histocompatibility complex, class II, DQ beta 1, a cytochrome C oxidase polypeptide III pseudogene, a major histocompatibility complex, class II, beta polypeptide pseudogene and two CpG islands, complete sequence Length = 147557 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 185 gttccagaattttaccagaatttt 208 ||||||||||||| |||||||||| Sbjct: 142216 gttccagaatttttccagaatttt 142239
>emb|AL122034.29|HSDJ90K10 Human DNA sequence from clone RP1-90K10 on chromosome 6 Contains the PPIL1 gene for peptidylprolyl isomerase (cyclophilin)-like 1 (CYPL1, CGI-124), gene FLJ25357, a novel gene, a novel pseudogene, the gene for a novel SCP-like extracellular protein, the gene for mitochondrial carrier homolog 1 (MTCH1) (CGI-64) and two CpG islands, complete sequence Length = 133154 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ttgtcgaaaagacatttctc 230 |||||||||||||||||||| Sbjct: 82315 ttgtcgaaaagacatttctc 82296
>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29 Length = 295150 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 78 cgtcggcaaggacgaggccgaggacgcc 105 ||||||||||||||| ||||||| |||| Sbjct: 254004 cgtcggcaaggacgacgccgaggtcgcc 254031
>emb|AJ293306.1|BCE293306 Burkholderia cepacia alkB gene, minD gene (partial), minC gene and serS gene Length = 6237 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 gtcggcaaggacgaggccga 98 |||||||||||||||||||| Sbjct: 4899 gtcggcaaggacgaggccga 4880
>gb|AF022214.1| Mycobacteriophage D29, complete genome Length = 49136 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 73 gaggccgtcggcaaggacgaggcc 96 ||||||||| |||||||||||||| Sbjct: 28269 gaggccgtccgcaaggacgaggcc 28246
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 ggccgtcggcgccaaggtca 139 |||||||||||||||||||| Sbjct: 3529040 ggccgtcggcgccaaggtca 3529059
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 caaggaggccgtcggcaagg 88 |||||||||||||||||||| Sbjct: 2317002 caaggaggccgtcggcaagg 2316983
>gb|AC154724.2| Mus musculus BAC clone RP23-125I9 from chromosome 14, complete sequence Length = 177085 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 cagaattttaccagaatttt 208 |||||||||||||||||||| Sbjct: 86165 cagaattttaccagaatttt 86184
>gb|AF245168.1|AF245168 Penicillium citrinum vacuolar serine protease mRNA, partial cds Length = 1139 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cccaagaagctcaaggaggc 77 |||||||||||||||||||| Sbjct: 811 cccaagaagctcaaggaggc 830
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 114 gctcgaggccgtcggcgccaaggtcacc 141 ||||||||||| |||||| ||||||||| Sbjct: 1337076 gctcgaggccgccggcgcgaaggtcacc 1337103
>dbj|AP005542.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0473D02 Length = 146185 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 caaggaggccgtcggcaagg 88 |||||||||||||||||||| Sbjct: 64501 caaggaggccgtcggcaagg 64482
>dbj|AK072310.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024E16, full insert sequence Length = 1093 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 caaggaggccgtcggcaagg 88 |||||||||||||||||||| Sbjct: 294 caaggaggccgtcggcaagg 313
>dbj|AK071817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I17, full insert sequence Length = 943 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 caaggaggccgtcggcaagg 88 |||||||||||||||||||| Sbjct: 294 caaggaggccgtcggcaagg 313
>gb|AF098517.1|AF098517 Penicillium citrinum alkaline serine protease Pen c2 mRNA, complete cds Length = 1902 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 cccaagaagctcaaggaggc 77 |||||||||||||||||||| Sbjct: 1375 cccaagaagctcaaggaggc 1394
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cctggcgctcaaggacgcca 37 |||||||||||||||||||| Sbjct: 2647270 cctggcgctcaaggacgcca 2647251
>gb|CP000224.1| Drosophila melanogaster genomic scaffold 211000022280794 Length = 474727 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ttccagaattttaccagaat 205 |||||||||||||||||||| Sbjct: 333780 ttccagaattttaccagaat 333799 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,227,683 Number of Sequences: 3902068 Number of extensions: 2227683 Number of successful extensions: 59100 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57842 Number of HSP's gapped (non-prelim): 1256 length of query: 329 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 307 effective length of database: 17,147,199,772 effective search space: 5264190330004 effective search space used: 5264190330004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
