Clone Information

BLAST Search Result

Clone Name	basd25m09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008218.1\| Oryza sativa (japonica cultivar-group) genomic D...	258	2e-65
2	dbj\|AK069200.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
3	dbj\|AK067367.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
4	dbj\|AK065699.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
5	dbj\|AK062564.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	258	2e-65
6	gb\|DP000011.1\| Oryza sativa (japonica cultivar-group) chromosome...	258	2e-65
7	emb\|AL731747.2\|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa...	258	2e-65
8	ref\|NM_118589.2\| Arabidopsis thaliana UBP16 (UBIQUITIN-SPECIFIC ...	48	0.033
9	emb\|AL161561.2\|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ...	48	0.033
10	emb\|AL035356.1\|ATF22K18 Arabidopsis thaliana DNA chromosome 4, B...	48	0.033
11	gb\|AF302666.1\|AF302666 Arabidopsis thaliana ubiquitin-specific p...	48	0.033
12	gb\|AC096684.3\| Takifugu rubripes clone 241N7, complete sequence	46	0.13
13	gb\|AC096997.3\| Takifugu rubripes clone 217A23, complete sequence	46	0.13
14	gb\|CP000282.1\| Saccharophagus degradans 2-40, complete genome	44	0.52
15	gb\|AC124659.10\| Mus musculus chromosome 15, clone RP24-167K18, c...	42	2.1
16	gb\|AC091396.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	42	2.1
17	gb\|AC122835.3\| Mus musculus BAC clone RP23-187I18 from 3, comple...	42	2.1
18	emb\|BX248325.7\| Zebrafish DNA sequence from clone CH211-233I11 i...	42	2.1
19	gb\|BC051037.1\| Mus musculus murinoglobulin 1, mRNA (cDNA clone M...	40	8.2
20	ref\|NM_008645.2\| Mus musculus murinoglobulin 1 (Mug1), mRNA	40	8.2
21	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	8.2
22	ref\|XM_974532.1\| PREDICTED: Mus musculus similar to murinoglobul...	40	8.2
23	ref\|XR_002817.1\| PREDICTED: Mus musculus similar to murinoglobul...	40	8.2
24	ref\|XM_987710.1\| PREDICTED: Mus musculus similar to murinoglobul...	40	8.2
25	ref\|XM_917532.2\| PREDICTED: Mus musculus similar to murinoglobul...	40	8.2
26	gb\|BC036299.1\| Mus musculus, clone IMAGE:4195167, mRNA	40	8.2
27	gb\|AC163283.3\| Mus musculus BAC clone RP23-405A16 from chromosom...	40	8.2
28	emb\|BX548069.7\| Zebrafish DNA sequence from clone CH211-238G23 i...	40	8.2
29	gb\|AC093572.18\| Pan troglodytes clone rp43-25g23, complete sequence	40	8.2
30	gb\|AC146761.6\| Pan troglodytes clone ptb-54f16, complete sequence	40	8.2
31	gb\|AC157667.11\| Mus musculus 6 BAC RP24-86B22 (Roswell Park Canc...	40	8.2
32	dbj\|AK144541.1\| Mus musculus adult male gall bladder cDNA, RIKEN...	40	8.2
33	dbj\|AK144255.1\| Mus musculus cDNA, RIKEN full-length enriched li...	40	8.2
34	gb\|AC093669.4\| Homo sapiens BAC clone RP11-540E16 from 4, comple...	40	8.2
35	gb\|AC093158.2\| Homo sapiens chromosome 1 clone RP11-439H8, compl...	40	8.2
36	dbj\|AK149376.1\| Mus musculus adult male liver tumor cDNA, RIKEN ...	40	8.2
37	gb\|AC155312.2\| Mus musculus BAC clone RP23-411F11 from chromosom...	40	8.2
38	emb\|BX470077.5\| Zebrafish DNA sequence from clone CH211-136P17 i...	40	8.2
39	ref\|NM_063657.1\| Caenorhabditis elegans WEE homolog family membe...	40	8.2
40	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
41	gb\|AY211267.1\| Chlamydomonas reinhardtii zeaxanthin epoxidase pr...	40	8.2
42	dbj\|AB158770.1\| Amphidinium carterae plastid psbC mRNA for photo...	40	8.2
43	dbj\|BA000022.2\| Synechocystis sp. PCC 6803 DNA, complete genome	40	8.2
44	dbj\|AP005313.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
45	dbj\|AP005400.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.2
46	emb\|BX119975.7\| Zebrafish DNA sequence from clone CH211-200A16 i...	40	8.2
47	emb\|Z36752.1\|CEF35H8 Caenorhabditis elegans Cosmid F35H8, comple...	40	8.2
48	emb\|AL049832.3\|CNS0000G Human chromosome 14 DNA sequence BAC R-6...	40	8.2
49	gb\|BC049868.1\| Mus musculus cDNA clone IMAGE:5097177, containing...	40	8.2
50	gb\|AC125530.4\| Mus musculus BAC clone RP23-387J8 from 6, complet...	40	8.2
51	emb\|Z75743.1\|HSLUCA9 Human DNA sequence from clone XXcos-9 on ch...	40	8.2
52	emb\|CR382130.1\| Yarrowia lipolytica chromosome D of strain CLIB1...	40	8.2
53	gb\|M65736.1\|MUSMURINC Mouse murinoglobulin mRNA, complete cds	40	8.2
54	dbj\|AP000353.2\| Homo sapiens genomic DNA, chromosome 22q11.2, IG...	40	8.2

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  258 bits (130), Expect = 2e-65
 Identities = 223/254 (87%)
 Strand = Plus / Plus

                                                                            
Query: 25       aagaggaagcagcggcactgtttacccttatcgggcattccgcgctggaagttggtcaag 84
                ||||||| |||| |||| |||| ||||||||||| ||||| || ||||||||||||||| 
Sbjct: 21696268 aagaggaggcagtggcattgttcacccttatcggacattctgcactggaagttggtcaac 21696327

                                                                            
Query: 85       aggtaacggtgaaagtattgaatgtagcacgaggccaggtcacattgacaatgaaggggg 144
                |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 21696328 aggtaagggtgaaagtattgaacgtagtacgaggccaggtcacgttgacaatgaaggagg 21696387

                                                                            
Query: 145      gagaagatgatgaagacgagttgtcgtcgttaaacaccaacctgaagcagggatggtcca 204
                |||||||||||||||| ||  || | || ||||||||  | ||||||||||| |||||||
Sbjct: 21696388 gagaagatgatgaagaggatctggcttcattaaacacacagctgaagcagggttggtcca 21696447

                                                                            
Query: 205      gagggaccaacgctttcgagttagctttccgtaggagcaaggaaatctctgcattcttgg 264
                |||||||||| || || ||| |||||||||||||||  ||||||||||||||||| ||||
Sbjct: 21696448 gagggaccaatgcatttgagctagctttccgtaggaataaggaaatctctgcatttttgg 21696507

                              
Query: 265      accagagggaaaag 278
                | ||||||||||||
Sbjct: 21696508 atcagagggaaaag 21696521



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 320      ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 371
                |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 21696932 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 21696983

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>dbj|AK069200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009A08, full
            insert sequence
          Length = 2554

 Score =  258 bits (130), Expect = 2e-65
 Identities = 223/254 (87%)
 Strand = Plus / Plus

                                                                        
Query: 25   aagaggaagcagcggcactgtttacccttatcgggcattccgcgctggaagttggtcaag 84
            ||||||| |||| |||| |||| ||||||||||| ||||| || ||||||||||||||| 
Sbjct: 1135 aagaggaggcagtggcattgttcacccttatcggacattctgcactggaagttggtcaac 1194

                                                                        
Query: 85   aggtaacggtgaaagtattgaatgtagcacgaggccaggtcacattgacaatgaaggggg 144
            |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 1195 aggtaagggtgaaagtattgaacgtagtacgaggccaggtcacgttgacaatgaaggagg 1254

                                                                        
Query: 145  gagaagatgatgaagacgagttgtcgtcgttaaacaccaacctgaagcagggatggtcca 204
            |||||||||||||||| ||  || | || ||||||||  | ||||||||||| |||||||
Sbjct: 1255 gagaagatgatgaagaggatctggcttcattaaacacacagctgaagcagggttggtcca 1314

                                                                        
Query: 205  gagggaccaacgctttcgagttagctttccgtaggagcaaggaaatctctgcattcttgg 264
            |||||||||| || || ||| |||||||||||||||  ||||||||||||||||| ||||
Sbjct: 1315 gagggaccaatgcatttgagctagctttccgtaggaataaggaaatctctgcatttttgg 1374

                          
Query: 265  accagagggaaaag 278
            | ||||||||||||
Sbjct: 1375 atcagagggaaaag 1388



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 320  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 371
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1799 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1850

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>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full
            insert sequence
          Length = 3861

 Score =  258 bits (130), Expect = 2e-65
 Identities = 223/254 (87%)
 Strand = Plus / Plus

                                                                        
Query: 25   aagaggaagcagcggcactgtttacccttatcgggcattccgcgctggaagttggtcaag 84
            ||||||| |||| |||| |||| ||||||||||| ||||| || ||||||||||||||| 
Sbjct: 1128 aagaggaggcagtggcattgttcacccttatcggacattctgcactggaagttggtcaac 1187

                                                                        
Query: 85   aggtaacggtgaaagtattgaatgtagcacgaggccaggtcacattgacaatgaaggggg 144
            |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 1188 aggtaagggtgaaagtattgaacgtagtacgaggccaggtcacgttgacaatgaaggagg 1247

                                                                        
Query: 145  gagaagatgatgaagacgagttgtcgtcgttaaacaccaacctgaagcagggatggtcca 204
            |||||||||||||||| ||  || | || ||||||||  | ||||||||||| |||||||
Sbjct: 1248 gagaagatgatgaagaggatctggcttcattaaacacacagctgaagcagggttggtcca 1307

                                                                        
Query: 205  gagggaccaacgctttcgagttagctttccgtaggagcaaggaaatctctgcattcttgg 264
            |||||||||| || || ||| |||||||||||||||  ||||||||||||||||| ||||
Sbjct: 1308 gagggaccaatgcatttgagctagctttccgtaggaataaggaaatctctgcatttttgg 1367

                          
Query: 265  accagagggaaaag 278
            | ||||||||||||
Sbjct: 1368 atcagagggaaaag 1381



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 320  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 371
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1792 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1843

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>dbj|AK065699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H04, full
            insert sequence
          Length = 2068

 Score =  258 bits (130), Expect = 2e-65
 Identities = 223/254 (87%)
 Strand = Plus / Plus

                                                                        
Query: 25   aagaggaagcagcggcactgtttacccttatcgggcattccgcgctggaagttggtcaag 84
            ||||||| |||| |||| |||| ||||||||||| ||||| || ||||||||||||||| 
Sbjct: 1135 aagaggaggcagtggcattgttcacccttatcggacattctgcactggaagttggtcaac 1194

                                                                        
Query: 85   aggtaacggtgaaagtattgaatgtagcacgaggccaggtcacattgacaatgaaggggg 144
            |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 1195 aggtaagggtgaaagtattgaacgtagtacgaggccaggtcacgttgacaatgaaggagg 1254

                                                                        
Query: 145  gagaagatgatgaagacgagttgtcgtcgttaaacaccaacctgaagcagggatggtcca 204
            |||||||||||||||| ||  || | || ||||||||  | ||||||||||| |||||||
Sbjct: 1255 gagaagatgatgaagaggatctggcttcattaaacacacagctgaagcagggttggtcca 1314

                                                                        
Query: 205  gagggaccaacgctttcgagttagctttccgtaggagcaaggaaatctctgcattcttgg 264
            |||||||||| || || ||| |||||||||||||||  ||||||||||||||||| ||||
Sbjct: 1315 gagggaccaatgcatttgagctagctttccgtaggaataaggaaatctctgcatttttgg 1374

                          
Query: 265  accagagggaaaag 278
            | ||||||||||||
Sbjct: 1375 atcagagggaaaag 1388



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 320  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 371
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1799 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1850

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>dbj|AK062564.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F04, full
           insert sequence
          Length = 1800

 Score =  258 bits (130), Expect = 2e-65
 Identities = 223/254 (87%)
 Strand = Plus / Plus

                                                                       
Query: 25  aagaggaagcagcggcactgtttacccttatcgggcattccgcgctggaagttggtcaag 84
           ||||||| |||| |||| |||| ||||||||||| ||||| || ||||||||||||||| 
Sbjct: 363 aagaggaggcagtggcattgttcacccttatcggacattctgcactggaagttggtcaac 422

                                                                       
Query: 85  aggtaacggtgaaagtattgaatgtagcacgaggccaggtcacattgacaatgaaggggg 144
           |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 423 aggtaagggtgaaagtattgaacgtagtacgaggccaggtcacgttgacaatgaaggagg 482

                                                                       
Query: 145 gagaagatgatgaagacgagttgtcgtcgttaaacaccaacctgaagcagggatggtcca 204
           |||||||||||||||| ||  || | || ||||||||  | ||||||||||| |||||||
Sbjct: 483 gagaagatgatgaagaggatctggcttcattaaacacacagctgaagcagggttggtcca 542

                                                                       
Query: 205 gagggaccaacgctttcgagttagctttccgtaggagcaaggaaatctctgcattcttgg 264
           |||||||||| || || ||| |||||||||||||||  ||||||||||||||||| ||||
Sbjct: 543 gagggaccaatgcatttgagctagctttccgtaggaataaggaaatctctgcatttttgg 602

                         
Query: 265 accagagggaaaag 278
           | ||||||||||||
Sbjct: 603 atcagagggaaaag 616



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 320  ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 371
            |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 1027 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 1078

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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  258 bits (130), Expect = 2e-65
 Identities = 223/254 (87%)
 Strand = Plus / Plus

                                                                            
Query: 25       aagaggaagcagcggcactgtttacccttatcgggcattccgcgctggaagttggtcaag 84
                ||||||| |||| |||| |||| ||||||||||| ||||| || ||||||||||||||| 
Sbjct: 21624613 aagaggaggcagtggcattgttcacccttatcggacattctgcactggaagttggtcaac 21624672

                                                                            
Query: 85       aggtaacggtgaaagtattgaatgtagcacgaggccaggtcacattgacaatgaaggggg 144
                |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 21624673 aggtaagggtgaaagtattgaacgtagtacgaggccaggtcacgttgacaatgaaggagg 21624732

                                                                            
Query: 145      gagaagatgatgaagacgagttgtcgtcgttaaacaccaacctgaagcagggatggtcca 204
                |||||||||||||||| ||  || | || ||||||||  | ||||||||||| |||||||
Sbjct: 21624733 gagaagatgatgaagaggatctggcttcattaaacacacagctgaagcagggttggtcca 21624792

                                                                            
Query: 205      gagggaccaacgctttcgagttagctttccgtaggagcaaggaaatctctgcattcttgg 264
                |||||||||| || || ||| |||||||||||||||  ||||||||||||||||| ||||
Sbjct: 21624793 gagggaccaatgcatttgagctagctttccgtaggaataaggaaatctctgcatttttgg 21624852

                              
Query: 265      accagagggaaaag 278
                | ||||||||||||
Sbjct: 21624853 atcagagggaaaag 21624866



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                    
Query: 320      ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 371
                |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 21625277 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 21625328

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>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score =  258 bits (130), Expect = 2e-65
 Identities = 223/254 (87%)
 Strand = Plus / Minus

                                                                          
Query: 25     aagaggaagcagcggcactgtttacccttatcgggcattccgcgctggaagttggtcaag 84
              ||||||| |||| |||| |||| ||||||||||| ||||| || ||||||||||||||| 
Sbjct: 116283 aagaggaggcagtggcattgttcacccttatcggacattctgcactggaagttggtcaac 116224

                                                                          
Query: 85     aggtaacggtgaaagtattgaatgtagcacgaggccaggtcacattgacaatgaaggggg 144
              |||||| ||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||
Sbjct: 116223 aggtaagggtgaaagtattgaacgtagtacgaggccaggtcacgttgacaatgaaggagg 116164

                                                                          
Query: 145    gagaagatgatgaagacgagttgtcgtcgttaaacaccaacctgaagcagggatggtcca 204
              |||||||||||||||| ||  || | || ||||||||  | ||||||||||| |||||||
Sbjct: 116163 gagaagatgatgaagaggatctggcttcattaaacacacagctgaagcagggttggtcca 116104

                                                                          
Query: 205    gagggaccaacgctttcgagttagctttccgtaggagcaaggaaatctctgcattcttgg 264
              |||||||||| || || ||| |||||||||||||||  ||||||||||||||||| ||||
Sbjct: 116103 gagggaccaatgcatttgagctagctttccgtaggaataaggaaatctctgcatttttgg 116044

                            
Query: 265    accagagggaaaag 278
              | ||||||||||||
Sbjct: 116043 atcagagggaaaag 116030



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                  
Query: 320    ttcagtttcaacttctggggttgaaagcacagttgacgacaagctcgttgag 371
              |||||||  ||||||||  | ||| ||||||||||| ||||| |||||||||
Sbjct: 115619 ttcagttgaaacttctgaagatgatagcacagttgatgacaaactcgttgag 115568

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>ref|NM_118589.2| Arabidopsis thaliana UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16);
            cysteine-type endopeptidase/ ubiquitin thiolesterase/
            ubiquitin-specific protease AT4G24560 (UBP16) mRNA,
            complete cds
          Length = 3721

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 136  tgaaggggggagaagatgatgaagacga 163
            ||||||||||||||||||| ||||||||
Sbjct: 3355 tgaaggggggagaagatgaggaagacga 3328

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>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
          Length = 198402

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 136    tgaaggggggagaagatgatgaagacga 163
              ||||||||||||||||||| ||||||||
Sbjct: 147284 tgaaggggggagaagatgaggaagacga 147311

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>emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone  F22K18 (ESSAII project)
          Length = 125803

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 136    tgaaggggggagaagatgatgaagacga 163
              ||||||||||||||||||| ||||||||
Sbjct: 101626 tgaaggggggagaagatgaggaagacga 101599

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>gb|AF302666.1|AF302666 Arabidopsis thaliana ubiquitin-specific protease 16 (UBP16) mRNA,
            complete cds
          Length = 3318

 Score = 48.1 bits (24), Expect = 0.033
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 136  tgaaggggggagaagatgatgaagacga 163
            ||||||||||||||||||| ||||||||
Sbjct: 2968 tgaaggggggagaagatgaggaagacga 2941

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>gb|AC096684.3| Takifugu rubripes clone 241N7, complete sequence
          Length = 84793

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 142  ggggagaagatgatgaagacgag 164
            |||||||||||||||||||||||
Sbjct: 1996 ggggagaagatgatgaagacgag 2018

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>gb|AC096997.3| Takifugu rubripes clone 217A23, complete sequence
          Length = 74841

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 142   ggggagaagatgatgaagacgag 164
             |||||||||||||||||||||||
Sbjct: 69530 ggggagaagatgatgaagacgag 69552

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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 523     ctacagtttctgctattgaagttgaa 548
               |||||||||||| |||||||||||||
Sbjct: 1921980 ctacagtttctggtattgaagttgaa 1921955

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>gb|AC124659.10| Mus musculus chromosome 15, clone RP24-167K18, complete sequence
          Length = 180859

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 286   ctccagaagtgaaaacagaag 306
             |||||||||||||||||||||
Sbjct: 70620 ctccagaagtgaaaacagaag 70640

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>gb|AC091396.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-298M8, complete
              sequence
          Length = 237142

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    ccaggtcacattgacaatgaa 139
              |||||||||||||||||||||
Sbjct: 209181 ccaggtcacattgacaatgaa 209161

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>gb|AC122835.3| Mus musculus BAC clone RP23-187I18 from 3, complete sequence
          Length = 218449

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 316   agacttcagtttcaacttctg 336
             |||||||||||||||||||||
Sbjct: 51641 agacttcagtttcaacttctg 51621

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>emb|BX248325.7| Zebrafish DNA sequence from clone CH211-233I11 in linkage group 9,
              complete sequence
          Length = 157207

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 18     ccagggnaagaggaagcagcggca 41
              |||||| |||||||||||||||||
Sbjct: 126668 ccaggggaagaggaagcagcggca 126645

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>gb|BC051037.1| Mus musculus murinoglobulin 1, mRNA (cDNA clone MGC:58950
            IMAGE:4195193), complete cds
          Length = 4672

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3375 atgaaggggggagtagatgatgaa 3398

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>ref|NM_008645.2| Mus musculus murinoglobulin 1 (Mug1), mRNA
          Length = 4672

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3375 atgaaggggggagtagatgatgaa 3398

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 415     aagctgtcactggtgccgtt 434
               ||||||||||||||||||||
Sbjct: 3841848 aagctgtcactggtgccgtt 3841867

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>ref|XM_974532.1| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC669343),
           mRNA
          Length = 1868

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 135 atgaaggggggagaagatgatgaa 158
           ||||||||||||| ||||||||||
Sbjct: 583 atgaaggggggagtagatgatgaa 606

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>ref|XR_002817.1| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC640530), mRNA
          Length = 4840

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3277 atgaaggggggagtagatgatgaa 3300

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>ref|XM_987710.1| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC640530), mRNA
          Length = 4737

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3400 atgaaggggggagtagatgatgaa 3423

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>ref|XM_917532.2| PREDICTED: Mus musculus similar to murinoglobulin 1 (LOC640530), mRNA
          Length = 5055

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3277 atgaaggggggagtagatgatgaa 3300

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>gb|BC036299.1| Mus musculus, clone IMAGE:4195167, mRNA
          Length = 4623

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3321 atgaaggggggagtagatgatgaa 3344

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>gb|AC163283.3| Mus musculus BAC clone RP23-405A16 from chromosome 12, complete sequence
          Length = 197540

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    gcattcttggaccagaggga 274
              ||||||||||||||||||||
Sbjct: 148105 gcattcttggaccagaggga 148124

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>emb|BX548069.7| Zebrafish DNA sequence from clone CH211-238G23 in linkage group 18,
             complete sequence
          Length = 142514

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 411   acagaagctgtcactggtgc 430
             ||||||||||||||||||||
Sbjct: 96938 acagaagctgtcactggtgc 96919

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>gb|AC093572.18| Pan troglodytes clone rp43-25g23, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    tgaagcagggatggtccaga 206
              ||||||||||||||||||||
Sbjct: 183435 tgaagcagggatggtccaga 183416

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>gb|AC146761.6| Pan troglodytes clone ptb-54f16, complete sequence
          Length = 153907

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 187  tgaagcagggatggtccaga 206
            ||||||||||||||||||||
Sbjct: 8580 tgaagcagggatggtccaga 8561

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>gb|AC157667.11| Mus musculus 6 BAC RP24-86B22 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 206878

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    tggaagttggtcaagaggta 89
             ||||||||||||||||||||
Sbjct: 47560 tggaagttggtcaagaggta 47541

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>dbj|AK144541.1| Mus musculus adult male gall bladder cDNA, RIKEN full-length enriched
            library, clone:G630093A09 product:murinoglobulin 1, full
            insert sequence
          Length = 4612

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3333 atgaaggggggagtagatgatgaa 3356

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>dbj|AK144255.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:G630001M04 product:murinoglobulin 1, full insert
            sequence
          Length = 4618

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3339 atgaaggggggagtagatgatgaa 3362

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>gb|AC093669.4| Homo sapiens BAC clone RP11-540E16 from 4, complete sequence
          Length = 96120

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   acagaagttgagactgagac 319
             ||||||||||||||||||||
Sbjct: 78645 acagaagttgagactgagac 78626

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>gb|AC093158.2| Homo sapiens chromosome 1 clone RP11-439H8, complete sequence
          Length = 179582

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 382    aagttgaaagcaaagaggat 401
              ||||||||||||||||||||
Sbjct: 107975 aagttgaaagcaaagaggat 107994

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>dbj|AK149376.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched
            library, clone:C730002N16 product:murinoglobulin 1, full
            insert sequence
          Length = 3849

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3598 atgaaggggggagtagatgatgaa 3621

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>gb|AC155312.2| Mus musculus BAC clone RP23-411F11 from chromosome 12, complete
             sequence
          Length = 197795

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gcattcttggaccagaggga 274
             ||||||||||||||||||||
Sbjct: 54240 gcattcttggaccagaggga 54259

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>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5,
             complete sequence
          Length = 165851

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 135   atgaaggggggagaagatgatgaa 158
             |||||||| |||||||||||||||
Sbjct: 37754 atgaagggaggagaagatgatgaa 37777

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>ref|NM_063657.1| Caenorhabditis elegans WEE homolog family member (wee-1.1) (wee-1.1)
            mRNA, complete cds
          Length = 1407

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 146  agaagatgatgaagacgagt 165
            ||||||||||||||||||||
Sbjct: 1263 agaagatgatgaagacgagt 1282

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      gaaaaggttactgctccaga 292
                ||||||||||||||||||||
Sbjct: 10874139 gaaaaggttactgctccaga 10874158

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>gb|AY211267.1| Chlamydomonas reinhardtii zeaxanthin epoxidase precursor (ZEP1) gene,
            complete cds; nuclear gene for chloroplast product
          Length = 6369

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 402  agctcttcaacagaagctgt 421
            ||||||||||||||||||||
Sbjct: 1022 agctcttcaacagaagctgt 1003

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>dbj|AB158770.1| Amphidinium carterae plastid psbC mRNA for photosystem II CP43
           protein, partial cds
          Length = 1066

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 538 ttgaagttgaaagcaaagag 557
           ||||||||||||||||||||
Sbjct: 345 ttgaagttgaaagcaaagag 326

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>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 414     gaagctgtcactggtgccgt 433
               ||||||||||||||||||||
Sbjct: 1588465 gaagctgtcactggtgccgt 1588446

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>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   gaaaaggttactgctccaga 292
             ||||||||||||||||||||
Sbjct: 97862 gaaaaggttactgctccaga 97881

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>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0698G06
          Length = 138282

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   gaaaaggttactgctccaga 292
             ||||||||||||||||||||
Sbjct: 13844 gaaaaggttactgctccaga 13863

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>emb|BX119975.7| Zebrafish DNA sequence from clone CH211-200A16 in linkage group 8,
             complete sequence
          Length = 154904

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   agctcttcaacagaagctgt 421
             ||||||||||||||||||||
Sbjct: 44489 agctcttcaacagaagctgt 44508

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>emb|Z36752.1|CEF35H8 Caenorhabditis elegans Cosmid F35H8, complete sequence
          Length = 38383

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   agaagatgatgaagacgagt 165
             ||||||||||||||||||||
Sbjct: 31855 agaagatgatgaagacgagt 31836

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>emb|AL049832.3|CNS0000G Human chromosome 14 DNA sequence BAC R-63D17 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177172

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  ggagaagatgatgaagacga 163
            ||||||||||||||||||||
Sbjct: 3135 ggagaagatgatgaagacga 3154

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>gb|BC049868.1| Mus musculus cDNA clone IMAGE:5097177, containing frame-shift errors
          Length = 4667

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3371 atgaaggggggagtagatgatgaa 3394

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>gb|AC125530.4| Mus musculus BAC clone RP23-387J8 from 6, complete sequence
          Length = 200068

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   tggaagttggtcaagaggta 89
            ||||||||||||||||||||
Sbjct: 9923 tggaagttggtcaagaggta 9942

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>emb|Z75743.1|HSLUCA9 Human DNA sequence from clone XXcos-9 on chromosome 3, complete
             sequence
          Length = 24055

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    aggaagcagcggcactgttt 47
             ||||||||||||||||||||
Sbjct: 19107 aggaagcagcggcactgttt 19088

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>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 458     tgaagttgaaagcaaagaggagga 481
               ||||||||| ||||||||||||||
Sbjct: 1800895 tgaagttgagagcaaagaggagga 1800872

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>gb|M65736.1|MUSMURINC Mouse murinoglobulin mRNA, complete cds
          Length = 4597

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 135  atgaaggggggagaagatgatgaa 158
            ||||||||||||| ||||||||||
Sbjct: 3316 atgaaggggggagtagatgatgaa 3339

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>dbj|AP000353.2| Homo sapiens genomic DNA, chromosome 22q11.2, IGLL region,
             clone:KB318B8
          Length = 123828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   tgaagcagggatggtccaga 206
             ||||||||||||||||||||
Sbjct: 28278 tgaagcagggatggtccaga 28297


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,378,468
Number of Sequences: 3902068
Number of extensions: 5378468
Number of successful extensions: 111196
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110917
Number of HSP's gapped (non-prelim): 279
length of query: 599
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 576
effective length of database: 17,143,297,704
effective search space: 9874539477504
effective search space used: 9874539477504
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result