ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AP2A_RAT (P58197) Transcription factor AP-2 alpha (AP2-alpha) (A... 32 0.40
2AP2A_SHEEP (Q9N0N3) Transcription factor AP-2 alpha (AP2-alpha) ... 32 0.40
3AP2A_MOUSE (P34056) Transcription factor AP-2 alpha (AP2-alpha) ... 30 2.0
4ZN703_HUMAN (Q9H7S9) Zinc finger protein 703 29 3.4
5ENV_SFV3L (P27399) Env polyprotein (Coat polyprotein) 28 4.4
6ENV_FOAMV (P14351) Env polyprotein (Coat polyprotein) 28 4.4

>AP2A_RAT (P58197) Transcription factor AP-2 alpha (AP2-alpha) (Activating|
           enhancer-binding protein 2 alpha) (Activator protein 2)
           (AP-2)
          Length = 437

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 223 LDPRRSXRMRXQGTASPHGLGAXXLELPLH 312
           LDPRR  R        PHGLG+   +LP+H
Sbjct: 121 LDPRRDYRRHEDLLHGPHGLGSGLGDLPIH 150



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>AP2A_SHEEP (Q9N0N3) Transcription factor AP-2 alpha (AP2-alpha) (Activating|
           enhancer-binding protein 2 alpha) (Activator protein 2)
           (AP-2)
          Length = 491

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 223 LDPRRSXRMRXQGTASPHGLGAXXLELPLH 312
           LDPRR  R        PHGLG+   +LP+H
Sbjct: 175 LDPRRDYRRHEDLLHGPHGLGSGLGDLPIH 204



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>AP2A_MOUSE (P34056) Transcription factor AP-2 alpha (AP2-alpha) (Activating|
           enhancer-binding protein 2 alpha) (Activator protein 2)
           (AP-2)
          Length = 437

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 223 LDPRRSXRMRXQGTASPHGLGAXXLELPLH 312
           LDPRR  R        PH LG+   +LP+H
Sbjct: 121 LDPRRDYRRHEDLLHGPHALGSGLGDLPIH 150



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>ZN703_HUMAN (Q9H7S9) Zinc finger protein 703|
          Length = 590

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 95  GVDPTRGGRIEGDLXGGVGLINGE 24
           G+DP++ G + G L GG+GL  G+
Sbjct: 333 GLDPSKSGLVGGQLSGGLGLPPGK 356



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>ENV_SFV3L (P27399) Env polyprotein (Coat polyprotein)|
          Length = 982

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 237 PAWIQRLSXGSTEMWPEAS 181
           PAWIQ+L+  + ++WP A+
Sbjct: 906 PAWIQQLASATRDVWPAAA 924



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>ENV_FOAMV (P14351) Env polyprotein (Coat polyprotein)|
          Length = 985

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -3

Query: 237 PAWIQRLSXGSTEMWPEAS 181
           PAWIQ+L+  + ++WP A+
Sbjct: 909 PAWIQQLAAATKDVWPAAA 927


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,931,676
Number of Sequences: 219361
Number of extensions: 378264
Number of successful extensions: 1362
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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