ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26a15 |
|---|---|
| Clone Library Name | barley_pub |
>PEX11_YEAST (Q12462) Peroxisomal membrane protein PMP27 (Peroxin-11)| Length = 235 Score = 35.4 bits (80), Expect = 0.11 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 8/139 (5%) Frame = +2 Query: 152 VLYLNKAEARDKICRAIQYGSKFIS-NGQPGTAQNVDKSTTLARKVFRLLKWVNDLHALI 328 V +L+ + R+K+ R +QY ++F++ A+ + T RK R LK +N L A Sbjct: 15 VKFLDGSAGREKVLRLLQYLARFLAVQNSSLLARQLQAQFTTVRKFLRFLKPLNHLQA-- 72 Query: 329 SPAAK------GTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSGIYQNKERT-DRIARIS 487 AAK + + + KN + +L LDQ L + T +I R S Sbjct: 73 --AAKFYDNKLASDNVVRVCNVLKNIFFAAYLSLDQVNLLRILKVIPVTVLTGKKIPRWS 130 Query: 488 LYCWMASSVCASLVELGEL 544 +CW+ + ++L ++ Sbjct: 131 NWCWLFGLLSGLAMDLRKI 149
>KIN2_YEAST (P13186) Serine/threonine-protein kinase KIN2 (EC 2.7.11.1)| Length = 1147 Score = 33.1 bits (74), Expect = 0.52 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Frame = +1 Query: 199 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQPSRQRHPSHTGPAWEV 378 HP R QQ P R + ++ PK R+ + PS +R+PS+ + +V Sbjct: 670 HPTR----QQEPLPEREPPTYMSKSNEISIKVPKSHSRTISDYIPSARRYPSYVPNSVDV 725 Query: 379 QECSAVDLLVPGPVRVA--REIGDLP 450 ++ A + + P+R ++ DLP Sbjct: 726 KQKPAKNTTIAPPIRSVSQKQNSDLP 751
>DHM1_PARDE (P12293) Methanol dehydrogenase subunit 1 precursor (EC 1.1.99.8)| (MDH large alpha subunit) (MEDH) Length = 631 Score = 30.4 bits (67), Expect = 3.4 Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 2/126 (1%) Frame = +2 Query: 125 ATRAELGLAVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQNVDKSTTLARKVFRLLKW 304 A +GLAVL A A D++ + + ++ G+ AQN + T + ++ + L+ Sbjct: 15 AMAVAMGLAVLTTAPATANDQLVELAKDPANWVMTGRDYNAQNYSEMTDINKENVKQLRP 74 Query: 305 VNDLHALISPAAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRSG--IYQNKERTDRIA 478 + +GTPL + +T LD L G ++QNK + + A Sbjct: 75 AWSFSTGVLHGHEGTPLVVGDRMFIHTPFPNTTFALD----LNEPGKILWQNKPKQNPTA 130 Query: 479 RISLYC 496 R C Sbjct: 131 RTVACC 136
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 30.4 bits (67), Expect = 3.4 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%) Frame = +1 Query: 214 QVHQQRPARHRAERRQVHHLGSQGLQ--APKVGERS-SCSHQPSRQRHPSHTGPAWEVQE 384 Q HQ + +H+A+++ + H G L AP+ ++ S S +H S+ Sbjct: 260 QQHQAQQQQHQAQQQSLAHYGGYQLHRYAPQQQQQHILLSSGSSSSKHNSNNNSNTSAGA 319 Query: 385 CSAVDLLVPGPVRVAREIGDLPEQGAHGPHRQD 483 SA + V G LP+ AH H + Sbjct: 320 ASAAVPIATSVAAVPTTGGSLPDSPAHESHSHE 352
>PERT_CANFA (Q8HYB7) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 933 Score = 30.4 bits (67), Expect = 3.4 Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 2/137 (1%) Frame = +2 Query: 86 ISKRAGRKMG--SLEATRAELGLAVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQNVD 259 I+ + GR G A R GL L+ +AE R + A G G P N+D Sbjct: 575 INLQRGRDHGLPGYNAWREFCGLGRLH-TRAELRSAVANATLAGRIMDLYGHP---DNID 630 Query: 260 KSTTLARKVFRLLKWVNDLHALISPAAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRS 439 W+ L + P A+ PL L+G+ AL D+F W S Sbjct: 631 V-------------WLGGLAEPLLPRARTGPLFACLIGRQMKALRDG----DRF-WWESS 672 Query: 440 GIYQNKERTDRIARISL 490 G++ +++R + +AR SL Sbjct: 673 GVFTDEQRRE-LARHSL 688
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 30.0 bits (66), Expect = 4.4 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = +1 Query: 274 GSQG--LQAPKVGE----RSSCSHQPSRQRHPSHTGPAWEVQECSAVDLLVPGPVRVARE 435 GSQG + P++ + ++S S PSR P HT P+ Q+ A + P P A Sbjct: 811 GSQGSHIHCPQLPQPALHQNSPSPVPSRTPTPHHTPPSIGAQQPPATTIPAPVPTPPAMP 870 Query: 436 IGDLPEQGAHGPHRQ 480 G Q H P RQ Sbjct: 871 PGP-QSQALHPPPRQ 884
>KRA13_HUMAN (Q8IUG1) Keratin-associated protein 1-3 (Keratin-associated protein| 1.8) (Keratin-associated protein 1.9) Length = 177 Score = 30.0 bits (66), Expect = 4.4 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +3 Query: 390 CCRPSCSWTSSCG*G 434 CC+PSC TSSCG G Sbjct: 80 CCQPSCCQTSSCGTG 94
>KRA15_HUMAN (Q9BYS1) Keratin-associated protein 1-5 (Keratin-associated protein| 1.5) (High sulfur keratin-associated protein 1.5) Length = 174 Score = 29.6 bits (65), Expect = 5.8 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = +3 Query: 360 WSCLGSPRMLCCRPSCSWTSSCG*GDRGFTRTRSARTASPGYPS 491 +S G+ CC+PSC TS C + RS +T+ G+PS Sbjct: 14 FSISGTCGSSCCQPSCCETSCC--------QPRSCQTSFCGFPS 49
>DNAA_COREF (Q8FUL7) Chromosomal replication initiator protein dnaA| Length = 573 Score = 29.6 bits (65), Expect = 5.8 Identities = 28/98 (28%), Positives = 41/98 (41%), Gaps = 4/98 (4%) Frame = +1 Query: 199 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKV----GERSSCSHQPSRQRHPSHTGP 366 HPV+ +V PA H+ + Q QAP GER S Q + +H+ P Sbjct: 135 HPVQQEVRAHAPAPHQQGQHQAAQHQPPANQAPGQYVVGGERGQAS-QSAGAWEQTHSMP 193 Query: 367 AWEVQECSAVDLLVPGPVRVAREIGDLPEQGAHGPHRQ 480 A++ Q V P + A + E AH P+R+ Sbjct: 194 AFD-QGFDPSPAPVEPPPQPAHPLRIPRETPAHNPNRE 230
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 29.6 bits (65), Expect = 5.8 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%) Frame = -2 Query: 281 CEPRWW--TCRRSARC--LAGRC 225 CEP WW TCRR +C A RC Sbjct: 150 CEPGWWSSTCRRPCQCNTAAARC 172
>KRA11_HUMAN (Q07627) Keratin-associated protein 1-1 (Keratin-associated protein| 1.1) (High sulfur keratin-associated protein 1.1) (Keratin-associated protein 1.6) (Keratin-associated protein 1.7) Length = 177 Score = 29.6 bits (65), Expect = 5.8 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = +3 Query: 390 CCRPSCSWTSSCG*G 434 CC+PSC TSSCG G Sbjct: 80 CCQPSCYQTSSCGTG 94
>RPOB_PINTH (P41607) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 29.3 bits (64), Expect = 7.6 Identities = 20/82 (24%), Positives = 33/82 (40%) Frame = +1 Query: 199 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQPSRQRHPSHTGPAWEV 378 HP+ + Q P A R++ HLG GL R +R HPS+ G + Sbjct: 375 HPLSQFLDQTNPLTEIAHGRKLSHLGPGGLTGRTASFR-------TRDIHPSYYGRICPI 427 Query: 379 QECSAVDLLVPGPVRVAREIGD 444 ++ + + + +IGD Sbjct: 428 DTSEGMNAGLVASLSIHAKIGD 449
>RPOB_PINKO (Q85X54) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1075 Score = 29.3 bits (64), Expect = 7.6 Identities = 20/82 (24%), Positives = 33/82 (40%) Frame = +1 Query: 199 HPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQPSRQRHPSHTGPAWEV 378 HP+ + Q P A R++ HLG GL R +R HPS+ G + Sbjct: 375 HPLSQFLDQTNPLTEIAHGRKLSHLGPGGLTGRTASFR-------TRDIHPSYYGRICPI 427 Query: 379 QECSAVDLLVPGPVRVAREIGD 444 ++ + + + +IGD Sbjct: 428 DTSEGMNAGLVSSLSIHAKIGD 449
>PX11B_MOUSE (Q9Z210) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 29.3 bits (64), Expect = 7.6 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 12/110 (10%) Frame = +2 Query: 152 VLYLNKAEARDKICRAIQYGSKFISNG--QPGTAQNVDKS-------TTLARKVFRLLKW 304 V + +++AR+++CRA QY + + + G + + K +L RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLEGHLSLGRKLLRL--- 61 Query: 305 VNDLHALISPAAKGTPLTLVLLG---KSKNALLSTFLFLDQFVWLGRSGI 445 N AL S A + L+ V+L + + + D +W G+SG+ Sbjct: 62 GNSTDALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL 110
>PX11B_HUMAN (O96011) Peroxisomal membrane protein 11B (Peroxin-11B)| (Peroxisomal biogenesis factor 11B) (PEX11beta) (Pex11pbeta) Length = 259 Score = 29.3 bits (64), Expect = 7.6 Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 12/110 (10%) Frame = +2 Query: 152 VLYLNKAEARDKICRAIQYGSKFISNG--QPGTAQNVDKS-------TTLARKVFRLLKW 304 V + +++AR+++CRA QY + + + G + + K +L RK+ RL Sbjct: 5 VRFSAQSQARERLCRAAQYACSLLGHALQRHGASPELQKQIRQLESHLSLGRKLLRL--- 61 Query: 305 VNDLHALISPAAKGTPLTLVLLG---KSKNALLSTFLFLDQFVWLGRSGI 445 N AL S A + L+ V+L + + + D +W G+SG+ Sbjct: 62 GNSADALES-AKRAVHLSDVVLRFCITVSHLNRALYFACDNVLWAGKSGL 110
>UPK3B_HUMAN (Q9BT76) Uroplakin-3B precursor (Uroplakin IIIb) (UPIIIb) (p35)| Length = 320 Score = 29.3 bits (64), Expect = 7.6 Identities = 18/39 (46%), Positives = 21/39 (53%) Frame = +2 Query: 278 RKVFRLLKWVNDLHALISPAAKGTPLTLVLLGKSKNALL 394 R + R KW +D H L P G P TL LLG +ALL Sbjct: 216 RHLARAAKWQHDRHYL-HPLFSGRPPTLGLLGSLYHALL 253
>CYSA_SYNY3 (P74548) Sulfate/thiosulfate import ATP-binding protein cysA (EC| 3.6.3.25) (Sulfate-transporting ATPase) Length = 355 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%) Frame = -1 Query: 195 LQILSRASALFRYSTARPSSALVASNEPIFLP----ALLLMTEKPRLAGALCKLSCWGGE 28 + +L R ++LF Y P S+ EP+F+ LL + +AG + ++ G E Sbjct: 236 VNVLPRNASLFNYHAFEPHSSNNGHQEPVFVRPHDFELLTEADDASVAGTIKRVIHLGSE 295 Query: 27 LELLLLV 7 +++ +L+ Sbjct: 296 IQVEVLL 302
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 381 RMLCCRPSCSWTSSCG*GDRGFTRTRSARTASPGYPSTAGWP 506 R C P+ +W+ +CG G +A A PG P +A P Sbjct: 217 RRACSSPTTAWSGACGAG------PTAATAAQPGKPRSAAAP 252
>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC| 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase) (Beta-1,3-glucanase) Length = 402 Score = 28.9 bits (63), Expect = 9.9 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Frame = -1 Query: 288 KTLRAKVVDLSTFCAVPGWPLLMNLEPYWMALQ---ILSRASALFRYSTARPSSALVASN 118 +T + +V L F + G PL+MNL PY++ +Q ++ + LF T PS +V N Sbjct: 84 QTWHSIMVPLLQFLSKTGSPLMMNLYPYYVYMQNKGVVPLDNCLFEPLT--PSKEMVDPN 141
>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril| interface-located protein 5) (Elastin microfibril interfacer 5) Length = 766 Score = 28.9 bits (63), Expect = 9.9 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +1 Query: 193 QGHPVRLQVHQQRPARHRAERRQVHHLGSQGLQAPKVGERSSCSHQ 330 +G ++HQ R A R+++ LGSQ LQ V R SC Q Sbjct: 343 EGQAASRRLHQSLDGRELALRQELSQLGSQ-LQGLSVSGRGSCCGQ 387
>THAP7_MOUSE (Q8VCZ3) THAP domain-containing protein 7| Length = 309 Score = 28.9 bits (63), Expect = 9.9 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = +1 Query: 271 LGSQGLQAPKVGERSSCSHQPSRQRHPSHTGPAWEVQECSAVDLLVPGP 417 LG G QA + G CS QPS ++HPS P + SA L +P P Sbjct: 179 LGPLGAQADEAG----CSTQPSPEQHPSPLEP--QPASPSAYMLRLPPP 221 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,997,314 Number of Sequences: 219361 Number of extensions: 1609728 Number of successful extensions: 6129 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5521 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6114 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
