ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26a13 |
|---|---|
| Clone Library Name | barley_pub |
>YTHD2_HUMAN (Q9Y5A9) YTH domain protein 2 (High-glucose-regulated protein 8)| (NY-REN-2 antigen) (CLL-associated antigen KW-14) Length = 579 Score = 201 bits (510), Expect = 2e-51 Identities = 98/187 (52%), Positives = 124/187 (66%) Frame = +3 Query: 45 PSSENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKK 224 PS + + + +N +DF + F+IKSYSEDDIH+SIKYN+W ST +GNK+ Sbjct: 382 PSEPHPVLEKLRSINNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKR 441 Query: 225 LDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVK 404 LDAAY+ KG P++L FSVN SG F GVAEM VD+ W QDKW G F V+ Sbjct: 442 LDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVR 498 Query: 405 WHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFT 584 W VKDVPN+ L+HI LENNE KPVTNSRDTQ++ LE+ Q+LKI + TSI +DF+ Sbjct: 499 WIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFS 558 Query: 585 FYENRQK 605 YE RQ+ Sbjct: 559 HYEKRQE 565
>YTHD1_MOUSE (P59326) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1 homolog) (DACA-1 homolog) Length = 559 Score = 199 bits (507), Expect = 5e-51 Identities = 94/171 (54%), Positives = 121/171 (70%) Frame = +3 Query: 93 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 272 +N ++F + F+IKSYSEDDIH+SIKY++W ST +GNK+LD A++ +KG P Sbjct: 377 YNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---P 433 Query: 273 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 452 ++L FSVN SG F GVAEM PVD+ + W QDKW G F VKW VKDVPNN L+HI Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIR 493 Query: 453 LENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQK 605 LENN+ KPVTNSRDTQ++ LE+ Q+LKI + TSI +DF+ YE RQ+ Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 544
>YTHD3_PONPY (Q5RFL8) YTH domain protein 3| Length = 585 Score = 198 bits (503), Expect = 1e-50 Identities = 96/171 (56%), Positives = 118/171 (69%) Frame = +3 Query: 93 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 272 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 273 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 452 ++L FSVN SG F GVAEM VD+ W QDKW G F VKW VKDVPNN L+HI Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520 Query: 453 LENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQK 605 LENN+ KPVTNSRDTQ++ LE+ Q+LKI TSI +DF YE RQ+ Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
>YTHD3_MOUSE (Q8BYK6) YTH domain protein 3| Length = 585 Score = 198 bits (503), Expect = 1e-50 Identities = 96/171 (56%), Positives = 118/171 (69%) Frame = +3 Query: 93 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 272 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 273 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 452 ++L FSVN SG F GVAEM VD+ W QDKW G F VKW VKDVPNN L+HI Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520 Query: 453 LENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQK 605 LENN+ KPVTNSRDTQ++ LE+ Q+LKI TSI +DF YE RQ+ Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
>YTHD3_HUMAN (Q7Z739) YTH domain protein 3| Length = 585 Score = 198 bits (503), Expect = 1e-50 Identities = 96/171 (56%), Positives = 118/171 (69%) Frame = +3 Query: 93 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 272 +N +DF + + F+IKSYSEDDIH+SIKY++W ST +GNK+LDAAY+ KG P Sbjct: 404 YNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---P 460 Query: 273 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 452 ++L FSVN SG F GVAEM VD+ W QDKW G F VKW VKDVPNN L+HI Sbjct: 461 LYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIR 520 Query: 453 LENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQK 605 LENN+ KPVTNSRDTQ++ LE+ Q+LKI TSI +DF YE RQ+ Sbjct: 521 LENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571
>YTHD1_HUMAN (Q9BYJ9) YTH domain protein 1 (Dermatomyositis associated with| cancer putative autoantigen 1) (DACA-1) Length = 559 Score = 197 bits (500), Expect = 3e-50 Identities = 93/171 (54%), Positives = 121/171 (70%) Frame = +3 Query: 93 FNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCP 272 +N ++F + F+IKSYSEDDIH+SIKY++W ST +GNK+LD+A++ +KG P Sbjct: 377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---P 433 Query: 273 IFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNILKHIV 452 ++L FSVN SG F GVAEM PVD+ + W QDKW G F V+W VKDVPNN L+HI Sbjct: 434 VYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIR 493 Query: 453 LENNEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQK 605 LENN+ KPVTNSRDTQ++ LE+ Q+LKI + TSI +DF YE RQ+ Sbjct: 494 LENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE 544
>YTDC1_HUMAN (Q96MU7) YTH domain-containing protein 1 (Putative splicing factor| YT521) Length = 727 Score = 70.5 bits (171), Expect = 4e-12 Identities = 50/177 (28%), Positives = 82/177 (46%), Gaps = 6/177 (3%) Frame = +3 Query: 30 KGQTLPSSENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTT 209 K + L SS D K ++ L+D A+FF+IKS + +++ + VW++ Sbjct: 329 KHEKLSSSVRAVRKDQTSKLKYVLQD-------ARFFLIKSNNHENVSLAKAKGVWSTLP 381 Query: 210 NGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSGQFVGVAEMTGPVDFEKTLEYW------Q 371 KKL+ A++ A++ + L FSV SG+F G A ++ + +W Sbjct: 382 VNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMS 435 Query: 372 QDKWNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRDTQDINLEQGIQMLKIF 542 G F + W +++P H+ NE KPV RD Q+I LE G Q+ +F Sbjct: 436 AKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492
>YTDC1_RAT (Q9QY02) YTH domain-containing protein 1 (Putative splicing factor| YT521) (RA301-binding protein) Length = 738 Score = 68.9 bits (167), Expect = 1e-11 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 6/145 (4%) Frame = +3 Query: 126 DAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKGSSCPIFLFFSVNTSG 305 DA+FF+IKS + +++ + VW++ KKL+ A++ A++ + L FSV SG Sbjct: 357 DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESG 410 Query: 306 QFVGVAEMTGPVDFEKTLEYW------QQDKWNGSFSVKWHIVKDVPNNILKHIVLENNE 467 +F G A ++ + +W G F + W +++P H+ NE Sbjct: 411 KFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470 Query: 468 GKPVTNSRDTQDINLEQGIQMLKIF 542 KPV RD Q+I LE G Q+ +F Sbjct: 471 HKPVKIGRDGQEIELECGTQLCLLF 495
>LPXA_CHLCV (Q820F0) Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine| O-acyltransferase (EC 2.3.1.129) (UDP-N-acetylglucosamine acyltransferase) Length = 279 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = +3 Query: 141 VIKSYSEDDIHKSIKYN--VWASTTNGNKKLDAAYQEAQAK---GSSCPIFLFFSVNTSG 305 V+KSY+ D H +I +W S GNK D YQ + G +C I F++ TS Sbjct: 39 VVKSYAYIDGHTTIGKGTTIWPSAMIGNKPQDLKYQGEKTYVTIGENCEI-REFAIITSS 97 Query: 306 QFVGVAEMTG 335 F G G Sbjct: 98 TFEGTTVSIG 107
>IL4RA_MOUSE (P16382) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)| (CD124 antigen) [Contains: Soluble interleukin-4 receptor alpha chain (IL-4-binding protein) (IL4-BP)] Length = 810 Score = 31.2 bits (69), Expect = 2.8 Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%) Frame = +3 Query: 324 EMTGPVDFEK-TLEYWQQDK--WNGSFSVKWHIVKDVPNNILKHIVLENNEGKPVTNSRD 494 EM PV ++ +E W + + W GSFS ++ P+N+ H + + N Sbjct: 90 EMNRPVQSDRYQMELWAEHRQLWQGSFSPSGNVKPLAPDNLTLHTNVSDEWLLTWNNLYP 149 Query: 495 TQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENR 599 + ++ + I M+ I +E I+ + T+ E R Sbjct: 150 SNNLLYKDLISMVNISREDNPAEFIVYNVTYKEPR 184
>CTNB_URECA (P35224) Beta-catenin| Length = 818 Score = 30.8 bits (68), Expect = 3.7 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Frame = +3 Query: 288 SVNT-SGQFVGVAEMTGPVDFEKTLEYWQQDKWNGSFSVKWHIVKDVPNNI-LKHIVLEN 461 SV T GQ++ V EM P+D ++ WQQ+++ G ++ P ++ KH + + Sbjct: 15 SVGTPQGQYMDVGEMP-PMDAKQQTMLWQQNQYMGDSGIQSGATTQAPPSVSSKHGLDDM 73 Query: 462 NEGKPVTNSRDTQDINLEQGIQMLKIFKEHVSK 560 + G+ + SR D +QG +E V + Sbjct: 74 DTGEGMDTSRMMFD--FDQGFSTQAFTQEQVDE 104
>Y939_SULTO (Q973G3) Hypothetical protein ST0939 precursor| Length = 709 Score = 30.4 bits (67), Expect = 4.8 Identities = 15/55 (27%), Positives = 31/55 (56%) Frame = -2 Query: 466 SLFSRTMCLRMLLGTSLTMCHLTENEPFHLSCCQYSRVFSKSTGPVISATPTNCP 302 S FS+ + + + TS T+ HL + +++ Y+ + + + +ISATP++ P Sbjct: 349 SNFSQKVTINVGNVTSYTIKHLKDGVTYYIQIVPYNSLGNGTPSDIISATPSSVP 403
>IME1_YEAST (P21190) Meiosis-inducing protein 1| Length = 360 Score = 30.4 bits (67), Expect = 4.8 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Frame = +3 Query: 54 ENKNADDVADKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDA 233 E+ N+ + +Q+ + FP D+ F + YS HKS N + +T+N N D Sbjct: 218 ESINSKNTDSYSQYQ-DQFPPHTDNIHSFNNRHYSN---HKSTNCNYYNNTSNNNNASDN 273 Query: 234 AYQ------EAQAKGSSCPIFLFFSVNTS 302 Y+ E Q P+ + F V S Sbjct: 274 VYEADPFIDEPQVPSYYYPLEIAFDVEKS 302
>Y655_ARCFU (O29602) Hypothetical protein AF0655| Length = 425 Score = 30.0 bits (66), Expect = 6.3 Identities = 11/40 (27%), Positives = 25/40 (62%) Frame = +3 Query: 489 RDTQDINLEQGIQMLKIFKEHVSKTSILEDFTFYENRQKL 608 RD QD+++E+ +++LK ++ + + ++ENR+ L Sbjct: 87 RDPQDMSIEEKVELLKDLEKIIRDVCVSTKLVYFENRRVL 126
>EPIB_STAEP (P30195) Epidermin biosynthesis protein epiB| Length = 986 Score = 30.0 bits (66), Expect = 6.3 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 16/95 (16%) Frame = +3 Query: 369 QQDKWNGSFSV---KWHIVKDV-----PNNIL------KHIVLENNEGKPVTNSRDTQD- 503 + + W F+ KWHI KDV N +L KH+++ E K R + Sbjct: 622 ETENWLNRFATIREKWHIPKDVIIAFGDNRLLLNLLNDKHLIILKKELKKHGRIRILESF 681 Query: 504 INLEQGIQMLKIFKEHVSKTSILE-DFTFYENRQK 605 IN +ML+I KTS+ E F +NR K Sbjct: 682 INESNNERMLEIVTPLYKKTSLKEQSFIIPKNRNK 716
>RIBD_CHLTR (O84735) Riboflavin biosynthesis protein ribD [Includes:| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) (HTP reductase)] Length = 375 Score = 30.0 bits (66), Expect = 6.3 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -2 Query: 361 SRVFSKSTGPVISATPTNCPLVFTEKNKNIG 269 SRVF S+G + AT CP + +K K++G Sbjct: 238 SRVFDLSSGSTLFATTQQCPKEYIQKLKDLG 268
>MAD1_YARLI (Q6C452) Spindle assembly checkpoint component MAD1 (Mitotic arrest| deficient protein 1) Length = 704 Score = 30.0 bits (66), Expect = 6.3 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Frame = +3 Query: 216 NKKLDAAYQEAQAKGSSCPIFLFF-SVNTSGQFVGVAEMTGPVDFEKTLEYWQQDK 380 NKK+ AQ+ S F F N GQF GV + +F ++YW +DK Sbjct: 626 NKKVKVTSMYAQSDEDS---FTFLPDPNHKGQFAGVIDSPLTDEFSNIVDYWVKDK 678
>Y926_STRP8 (Q8P1E4) Hypothetical UPF0230 protein spyM18_0926| Length = 282 Score = 29.6 bits (65), Expect = 8.2 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 81 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 254 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 255 KGSSCPIFLFFSVNTSG 305 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95
>Y865_STRP1 (Q9A0A6) Hypothetical UPF0230 protein SPy0865/M5005_Spy0672| Length = 282 Score = 29.6 bits (65), Expect = 8.2 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 81 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 254 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 255 KGSSCPIFLFFSVNTSG 305 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95
>Y690_STRP6 (Q5XCN8) Hypothetical UPF0230 protein M6_Spy0690| Length = 282 Score = 29.6 bits (65), Expect = 8.2 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Frame = +3 Query: 81 DKAQFNLEDFPVQYDDAKFFVIKSYSEDDIHKSI--KYNVWASTTNGNKKLDAAYQEAQA 254 DKA F+L D PV DD +F ++ S DD ++ + N+ ++ +LD + Sbjct: 20 DKAIFSL-DIPVIIDDETYFEGRNLSIDDFYQKMADSQNLPKTSQPSLSELDNLLGLLSS 78 Query: 255 KGSSCPIFLFFSVNTSG 305 KG + I LF + SG Sbjct: 79 KGYTHVIGLFLAGGISG 95 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,072,151 Number of Sequences: 219361 Number of extensions: 1816046 Number of successful extensions: 5474 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5286 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5458 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6200242422 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
