Clone Information

BLAST Search Result

Clone Name	basd26a12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GTE6_ARATH (Q9FT54) Transcription factor GTE6 (GENERAL TRANSCRIP...	183	4e-46
2	BRD2_CANFA (Q5TJG6) Bromodomain-containing protein 2	89	8e-18
3	BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 prot...	89	1e-17
4	BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like...	85	2e-16
5	BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic ch...	84	3e-16
6	BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 prot...	84	3e-16
7	BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomai...	83	8e-16
8	YCK2_SCHPO (Q9Y7N0) Hypothetical bromodomain protein C1450.02	82	1e-15
9	FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chor...	81	3e-15
10	BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain ...	66	7e-11
11	YK82_SCHPO (Q9HGP4) Hypothetical bromodomain protein C631.02	65	1e-10
12	BDF1_YEAST (P35817) Protein BDF1	64	3e-10
13	BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain ...	64	5e-10
14	CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)	61	3e-09
15	GCN5_YEAST (Q03330) Histone acetyltransferase GCN5 (EC 2.3.1.48)	60	5e-09
16	TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (...	60	7e-09
17	TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (...	59	1e-08
18	TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (...	59	1e-08
19	BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing...	59	1e-08
20	GCN5_ASHGO (Q756G9) Histone acetyltransferase GCN5 (EC 2.3.1.48)	58	2e-08
21	BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing...	58	3e-08
22	CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)	58	3e-08
23	BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain ...	58	3e-08
24	GCN5_KLULA (Q6CXW4) Histone acetyltransferase GCN5 (EC 2.3.1.48)	57	3e-08
25	TIF1A_HUMAN (O15164) Transcription intermediary factor 1-alpha (...	57	5e-08
26	EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)	57	6e-08
27	CBP1_CAEEL (P34545) Protein cbp-1	57	6e-08
28	GCN5_CANGA (Q6FTW5) Histone acetyltransferase GCN5 (EC 2.3.1.48)	57	6e-08
29	GCN5_SCHPO (Q9UUK2) Histone acetyltransferase gcn5 (EC 2.3.1.48)	56	8e-08
30	BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain ...	56	8e-08
31	TRI66_HUMAN (O15016) Tripartite motif protein 66	56	8e-08
32	GCN5_YARLI (Q8WZM0) Histone acetyltransferase GCN5 (EC 2.3.1.48)	56	8e-08
33	BRD8_HUMAN (Q9H0E9) Bromodomain-containing protein 8 (p120) (Ske...	56	1e-07
34	BRD8_MOUSE (Q8R3B7) Bromodomain-containing protein 8	56	1e-07
35	BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain ...	56	1e-07
36	BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain ...	55	1e-07
37	TRI66_MOUSE (Q924W6) Tripartite motif protein 66	55	1e-07
38	GCN5_DEBHA (Q6BGW1) Histone acetyltransferase GCN5 (EC 2.3.1.48)	54	4e-07
39	PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BR...	52	1e-06
40	PB1_CHICK (Q90941) Protein polybromo-1	50	4e-06
41	TAF1_HUMAN (P21675) Transcription initiation factor TFIID subuni...	50	6e-06
42	SMCA2_HUMAN (P51531) Probable global transcription activator SNF...	49	1e-05
43	TAF1L_HUMAN (Q8IZX4) Transcription initiation factor TFIID 210 k...	49	1e-05
44	CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2	48	3e-05
45	BRD7_PONPY (Q5R8B0) Bromodomain-containing protein 7	47	4e-05
46	BRD7_MOUSE (O88665) Bromodomain-containing protein 7 (75 kDa bro...	47	4e-05
47	BRD7_HUMAN (Q9NPI1) Bromodomain-containing protein 7 (75 kDa bro...	47	4e-05
48	PCAF_HUMAN (Q92831) Histone acetyltransferase PCAF (EC 2.3.1.48)...	47	4e-05
49	SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodel...	47	4e-05
50	BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing prote...	47	4e-05
51	TAF1_DROME (P51123) Transcription initiation factor TFIID subuni...	47	5e-05
52	BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like...	46	8e-05
53	BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain ...	46	8e-05
54	BRD7_CHICK (Q5ZKG2) Bromodomain-containing protein 7	46	1e-04
55	ATAD2_MOUSE (Q8CDM1) ATPase family AAA domain-containing protein 2	44	4e-04
56	BRD1_SCHPO (Q09948) Bromodomain protein brd1	44	4e-04
57	SNF21_SCHPO (Q9UTN6) SNF2-family ATP dependent chromatin remodel...	44	5e-04
58	SMCA4_HUMAN (P51532) Probable global transcription activator SNF...	44	5e-04
59	ATAD2_PONPY (Q5RDX4) ATPase family AAA domain-containing protein 2	42	0.002
60	STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (EC 3.6.1.-) (ATP-...	42	0.002
61	ATAD2_HUMAN (Q6PL18) ATPase family AAA domain-containing protein 2	42	0.002
62	RSC2_YEAST (Q06488) Chromatin structure remodeling complex prote...	39	0.010
63	BAZ1A_XENLA (Q8UVR5) Bromodomain adjacent to zinc finger domain ...	39	0.010
64	GCNL2_HUMAN (Q92830) General control of amino acid synthesis pro...	39	0.013
65	GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis pro...	39	0.013
66	K1240_HUMAN (Q9ULI0) Protein KIAA1240 (Fragment)	39	0.017
67	RSC1_YEAST (P53236) Chromatin structure remodeling complex prote...	38	0.022
68	RAD50_SULAC (O33600) DNA double-strand break repair rad50 ATPase	37	0.037
69	RSC1_SCHPO (O74964) Chromatin structure remodeling complex prote...	37	0.037
70	BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dep...	37	0.049
71	SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3....	37	0.049
72	RSC4_YEAST (Q02206) Chromatin structure remodeling complex prote...	37	0.049
73	DPOL_BPT4 (P04415) DNA polymerase (EC 2.7.7.7) (Gp43)	36	0.11
74	BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-contai...	35	0.24
75	PKCB1_HUMAN (Q9ULU4) Protein kinase C-binding protein 1 (Rack7) ...	34	0.41
76	TBP7_CAEEL (P54816) TAT-binding homolog 7	33	0.54
77	LIN49_CAEEL (Q20318) Protein lin-49 (Abnormal cell lineage prote...	32	1.2
78	DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC)	32	1.6
79	ARGR2_YEAST (P05085) Arginine metabolism regulation protein II	32	1.6
80	LVA_DROME (Q8MSS1) Protein lava lamp	32	1.6
81	MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II ...	31	2.7
82	YID7_YEAST (P40534) Hypothetical 75.0 kDa protein in NOT3-CKA1 i...	31	2.7
83	Y511_METAC (Q8TTC6) Hypothetical UPF0228 protein MA0511	31	2.7
84	GRAU_DROME (Q9U405) Transcription factor grauzone	31	3.5
85	YFK8_YEAST (P43610) Hypothetical ATP-dependent helicase YFR038W ...	30	4.6
86	USO1_YEAST (P25386) Intracellular protein transport protein USO1...	30	4.6
87	INVO_PONPY (P14708) Involucrin	30	4.6
88	STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2)	30	4.6
89	NRDC_PONPY (Q5R4H6) Nardilysin precursor (EC 3.4.24.61) (N-argin...	30	6.0
90	Y473_RICPR (Q9ZD71) Hypothetical protein RP473	30	6.0
91	PHOU1_THEMA (Q9X0Y7) Phosphate transport system protein phoU hom...	30	6.0
92	RAD50_METJA (Q58718) DNA double-strand break repair rad50 ATPase	30	6.0
93	IWS1_MOUSE (Q8C1D8) IWS1-like protein	30	6.0
94	KTN1_HUMAN (Q86UP2) Kinectin (Kinesin receptor) (CG-1 antigen)	30	6.0
95	ITSN1_XENLA (O42287) Intersectin-1	30	7.8
96	MYH7_MESAU (P13540) Myosin heavy chain, cardiac muscle beta isof...	30	7.8
97	REV1_YEAST (P12689) DNA repair protein REV1 (EC 2.7.7.-)	30	7.8
98	MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isofor...	30	7.8
99	MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isof...	30	7.8
100	BPAEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/...	30	7.8

>GTE6_ARATH (Q9FT54) Transcription factor GTE6 (GENERAL TRANSCRIPTION FACTOR|
           GROUP E6)
          Length = 369

 Score =  183 bits (464), Expect = 4e-46
 Identities = 94/184 (51%), Positives = 124/184 (67%), Gaps = 2/184 (1%)
 Frame = +1

Query: 82  KGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGK 261
           K M DLMRQ   I RQIT H+ + PF+ PV+V GL L DY ++I KPMDFSTI+N+ME K
Sbjct: 89  KRMQDLMRQFGTIFRQITQHKCAWPFMHPVNVEGLGLHDYFEVIDKPMDFSTIKNQMEAK 148

Query: 262 DGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEE-- 435
           DGT YK V +IY+D+RL+F NAM YN+E  DV+ MAK LL+KFEEKW   LPKV+ EE  
Sbjct: 149 DGTGYKHVMQIYADMRLVFENAMNYNEETSDVYSMAKKLLEKFEEKWAHFLPKVQEEEKI 208

Query: 436 RKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQRCKKMTTDEKRKL 615
           R+  E   A     + E +  K  ++  +E+   N +LE+L   VV+RC+K+T +EKR +
Sbjct: 209 REEEEKQAAKEALLAKEASHIKTTRELGNEICHANDELEKLMRKVVERCRKITIEEKRNI 268

Query: 616 GAGL 627
           G  L
Sbjct: 269 GLAL 272

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>BRD2_CANFA (Q5TJG6) Bromodomain-containing protein 2|
          Length = 803

 Score = 89.4 bits (220), Expect = 8e-18
 Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 15/171 (8%)
 Frame = +1

Query: 88  MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEG 258
           + + ++   GI++++ S + +A   PF +PVD   L L DYH II  PMD ST++ KME 
Sbjct: 346 LSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMEN 405

Query: 259 KDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEER 438
           +D   Y+  +E  +DVRL+F+N   YN   HDV  MA+ L D FE ++ ++         
Sbjct: 406 RD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM-------PD 455

Query: 439 KHVEPNDAP------------TTDTSPEDAIAKLAKDTDDELNEINRQLEE 555
           + +EP   P            ++++S E++ ++ + + D+E +E   + EE
Sbjct: 456 EPLEPGPLPVSTALPPGLAKSSSESSSEESSSESSSEEDEEEDEEEEEEEE 506



 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 39/110 (35%), Positives = 61/110 (55%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +++ +  H+++ PF QPVD V L L DYHKII +PMD  TI+ ++E      Y +  E  
Sbjct: 86  VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECM 142

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHV 447
            D   +F N   YN    D+ +MA+ L    E+ +LQ +  +  EE++ V
Sbjct: 143 QDFNTMFTNCYIYNKPTDDIVLMAQTL----EKIFLQKVASMPQEEQELV 188

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>BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 protein) (O27.1.1)|
          Length = 801

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 53/159 (33%), Positives = 85/159 (53%), Gaps = 3/159 (1%)
 Frame = +1

Query: 88  MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEG 258
           + + ++   GI++++ S + +A   PF +PVD   L L DYH II  PMD ST++ KME 
Sbjct: 346 LSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMEN 405

Query: 259 KDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEER 438
           +D   Y+  +E  +DVRL+F+N   YN   HDV  MA+ L D FE ++ ++         
Sbjct: 406 RD---YRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRYAKM-------PD 455

Query: 439 KHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEE 555
           + +EP   P +   P   +AK + ++  E +      EE
Sbjct: 456 EPLEPGPLPVSTAMP-PGLAKSSSESSSEESSSESSSEE 493



 Score = 69.7 bits (169), Expect = 7e-12
 Identities = 39/110 (35%), Positives = 61/110 (55%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +++ +  H+++ PF QPVD V L L DYHKII +PMD  TI+ ++E      Y +  E  
Sbjct: 86  VMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLE---NNYYWAASECM 142

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHV 447
            D   +F N   YN    D+ +MA+ L    E+ +LQ +  +  EE++ V
Sbjct: 143 QDFNTMFTNCYIYNKPTDDIVLMAQTL----EKIFLQKVASMPQEEQELV 188

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>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)|
          Length = 726

 Score = 85.1 bits (209), Expect = 2e-16
 Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 20/191 (10%)
 Frame = +1

Query: 100 MRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGT 270
           +R    I+R++ S + +A   PF +PVD   L+L DYH II  PMD ST++ KM   DG 
Sbjct: 312 LRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKM---DGR 368

Query: 271 KYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQ-------------- 408
           +Y   +   +DVRL+F+N   YN   H+V  MA+ L D FE ++ +              
Sbjct: 369 EYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPVEAPALPAP 428

Query: 409 ---LLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQR 579
              ++ K     R   E +    +  S E+   +LA +  ++L  ++ QL  L    V +
Sbjct: 429 AAPMVSKGAESSRSSEESSSDSGSSDSEEERATRLA-ELQEQLKAVHEQLAALSQAPVNK 487

Query: 580 CKKMTTDEKRK 612
            KK    ++++
Sbjct: 488 PKKKKEKKEKE 498



 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 39/112 (34%), Positives = 61/112 (54%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +++ +  H+++ PF QPVD + L L DYHKII  PMD  TI+ ++E      Y S  E  
Sbjct: 46  VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLE---NNYYWSASECM 102

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEP 453
            D   +F N   YN    D+ +MA+ L    E+ +LQ + ++  EE + + P
Sbjct: 103 QDFNTMFTNCYIYNKPTDDIVLMAQAL----EKIFLQKVAQMPQEEVELLPP 150

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>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
 Frame = +1

Query: 112 AGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKS 282
           +GI++++ + + +A   PF +PVDV  L L DY  II  PMD STI++K+E ++   Y+ 
Sbjct: 359 SGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESRE---YRD 415

Query: 283 VREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQL----------------- 411
            +E  +DVRL+F+N   YN   H+V  MA+ L D FE ++ ++                 
Sbjct: 416 AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPVVTVSSPAVP 475

Query: 412 ------LPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVV 573
                  P   ++       +   +TD S E+   +LA +  ++L  ++ QL  L     
Sbjct: 476 PPTKVVAPPSSSDSSSDSSSDSDSSTDDSEEERAQRLA-ELQEQLKAVHEQLAALSQPQQ 534

Query: 574 QRCKKMTTDEKRK 612
            + KK   D+K K
Sbjct: 535 NKPKKKEKDKKEK 547



 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 38/105 (36%), Positives = 57/105 (54%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +++ +  H+++ PF QPVD V L L DY+KII  PMD  TI+ ++E      Y + +E  
Sbjct: 70  VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLE---NNYYWNAQECI 126

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENE 432
            D   +F N   YN    D+ +MA+ L   F +K +  LP  E E
Sbjct: 127 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK-INELPTEETE 170

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>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 84.0 bits (206), Expect = 3e-16
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
 Frame = +1

Query: 112 AGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKS 282
           +GI++++ + + +A   PF +PVDV  L L DY  II  PMD STI++K+E ++   Y+ 
Sbjct: 358 SGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEARE---YRD 414

Query: 283 VREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQL----------------- 411
            +E  +DVRL+F+N   YN   H+V  MA+ L D FE ++ ++                 
Sbjct: 415 AQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPEEPVVAVSSPAVP 474

Query: 412 ------LPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVV 573
                  P   ++       +   +TD S E+   +LA +  ++L  ++ QL  L     
Sbjct: 475 PPTKVVAPPSSSDSSSDSSSDSDSSTDDSEEERAQRLA-ELQEQLKAVHEQLAALSQPQQ 533

Query: 574 QRCKKMTTDEKRK 612
            + KK   D+K K
Sbjct: 534 NKPKKKEKDKKEK 546



 Score = 68.6 bits (166), Expect = 2e-11
 Identities = 38/105 (36%), Positives = 57/105 (54%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +++ +  H+++ PF QPVD V L L DY+KII  PMD  TI+ ++E      Y + +E  
Sbjct: 70  VLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLE---NNYYWNAQECI 126

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENE 432
            D   +F N   YN    D+ +MA+ L   F +K +  LP  E E
Sbjct: 127 QDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQK-INELPTEETE 170

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>BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing|
           FSH-like protein FSRG2)
          Length = 726

 Score = 82.8 bits (203), Expect = 8e-16
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
 Frame = +1

Query: 100 MRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGT 270
           +R    I+R++ S + +A   PF +PVD   L+L DYH II  PMD ST++ KM   D  
Sbjct: 311 LRHCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKM---DSR 367

Query: 271 KYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQ-------------- 408
           +Y   +   +D+RL+F+N   YN   H+V  MA+ L D FE ++ +              
Sbjct: 368 EYPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPMEAPALPAP 427

Query: 409 ---LLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQR 579
              ++ K     R   E +    +  S E+   +LA +  ++L  ++ QL  L    V +
Sbjct: 428 TAPIVSKGAESSRSSEESSSDSGSSDSEEERATRLA-ELQEQLKAVHEQLAALSQAPVNK 486

Query: 580 CKKMTTDEKRK 612
            KK    ++++
Sbjct: 487 PKKKKEKKEKE 497



 Score = 72.0 bits (175), Expect = 1e-12
 Identities = 39/112 (34%), Positives = 61/112 (54%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +++ +  H+++ PF QPVD + L L DYHKII  PMD  TI+ ++E      Y S  E  
Sbjct: 45  VVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLE---NNYYWSASECM 101

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEP 453
            D   +F N   YN    D+ +MA+ L    E+ +LQ + ++  EE + + P
Sbjct: 102 QDFNTMFTNCYIYNKPTDDIVLMAQAL----EKIFLQKVAQMPQEEVELLPP 149

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>YCK2_SCHPO (Q9Y7N0) Hypothetical bromodomain protein C1450.02|
          Length = 578

 Score = 82.4 bits (202), Expect = 1e-15
 Identities = 51/175 (29%), Positives = 91/175 (52%), Gaps = 6/175 (3%)
 Frame = +1

Query: 100 MRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGT 270
           MR  + +++++   ++ +   PF QPVD V     DY  +I +PMD STIQ+K+   +  
Sbjct: 257 MRFCSTVLKELYKRQYESFAFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKLNKNE-- 314

Query: 271 KYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEE--RKH 444
            Y ++ E  SD+ L+FNN  TYN     VH+M + L + F+EKW +  PK ++    ++ 
Sbjct: 315 -YSTLEEFESDILLMFNNCFTYNPPGTPVHVMGRQLENVFKEKW-EARPKFDDATLVKQQ 372

Query: 445 VEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRN-MVVQRCKKMTTDEK 606
               DA   +   E+A+    +    +   +++Q+  L++ +   + KKM    K
Sbjct: 373 EAETDALFDNGEEEEALMSEEEINGAKFAAVDKQISMLQDTLEAMKAKKMNRMRK 427



 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 41/131 (31%), Positives = 62/131 (47%)
 Frame = +1

Query: 91  PDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGT 270
           P   +    I+RQ+   + SAPF  PVD +   + DY  I+  PMD  TI+ K+   +  
Sbjct: 87  PPQQKYCLAIVRQLKRTKNSAPFKVPVDPIKQNIPDYPTIVKNPMDLGTIEKKLTSYE-- 144

Query: 271 KYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVE 450
            Y   +E   D+ L+F+N   YN     V  M K L + FE + L+ LP  E      V+
Sbjct: 145 -YSVPQEFIDDMNLMFSNCFLYNGTESPVGSMGKALQEVFERQ-LKQLPDAEQPAAAPVK 202

Query: 451 PNDAPTTDTSP 483
            +   +  T+P
Sbjct: 203 KSKQKSASTAP 213

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>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane|
           protein)
          Length = 2038

 Score = 80.9 bits (198), Expect = 3e-15
 Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
 Frame = +1

Query: 88  MPDLMRQLAGIIRQITSHEWSA---PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEG 258
           + D ++    I++++ S + S    PF +PVD   L L DYH II KPMD  T++ KM+ 
Sbjct: 477 LSDALKSCNEILKELFSKKHSGYAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDN 536

Query: 259 KDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQL 411
           ++   YKS  E  +DVRLIF N   YN   HDV  M + L D FE ++  +
Sbjct: 537 RE---YKSAPEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVFEMRYANI 584



 Score = 76.6 bits (187), Expect = 6e-14
 Identities = 43/105 (40%), Positives = 59/105 (56%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +++ I  H +S PF QPVD   L L DYHKII +PMD  TI+ ++E      Y S +E  
Sbjct: 46  VMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRLE---NNYYWSAKETI 102

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENE 432
            D   +FNN   YN    DV +MA+ L   F +K ++ +PK E E
Sbjct: 103 QDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQK-IESMPKEELE 146

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>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular|
            matrix protein F22)
          Length = 2130

 Score = 66.2 bits (160), Expect = 7e-11
 Identities = 35/98 (35%), Positives = 59/98 (60%)
 Frame = +1

Query: 118  IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
            I+ ++ +HE + PFL PV++    +  Y K+I KPMDFSTI++K+      +Y +V    
Sbjct: 2034 ILSELETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIRDKLTSG---QYPNVEAFS 2088

Query: 298  SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQL 411
             DVRL+F+N  T+N++  D+      +   FE+KW ++
Sbjct: 2089 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTEI 2126

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>YK82_SCHPO (Q9HGP4) Hypothetical bromodomain protein C631.02|
          Length = 727

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 3/145 (2%)
 Frame = +1

Query: 139 HE-WSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLI 315
           HE ++ PF +PV+       DY K+I  PMD  T+QNK+   +  +Y S++   +D+ L+
Sbjct: 409 HEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGTMQNKL---NHNEYASMKAFEADMVLM 465

Query: 316 FNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEP--NDAPTTDTSPED 489
           F N   +N     VH+M K L   F++ W    P  ++E    +     D    D    D
Sbjct: 466 FKNCYKFNSAGTPVHLMGKKLESIFQKLWAN-KPDFDSETYMGMSSVNTDYYYGDNEVFD 524

Query: 490 AIAKLAKDTDDELNEINRQLEELRN 564
           +  +  +D  +E   +NRQ+ +L++
Sbjct: 525 SGDEFLEDDGEEFEAVNRQIHKLQS 549



 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 39/128 (30%), Positives = 58/128 (45%)
 Frame = +1

Query: 103 RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKS 282
           + +  ++RQ+     S PF  PVD V   + DY  II  P+D  T+Q K        Y S
Sbjct: 236 KYIHAMLRQLRRGRDSIPFRAPVDPVKQNIPDYPTIIKNPIDLGTMQKKF---SSGVYSS 292

Query: 283 VREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDA 462
            +    D+ L+F+N   YN     V +M K L   FE + L+ LP        +  P   
Sbjct: 293 AQHFIDDMNLMFSNCFLYNGTESPVGVMGKNLQATFERQ-LKQLPSA--YVTSYSRPGRR 349

Query: 463 PTTDTSPE 486
           P + T+P+
Sbjct: 350 PRSMTAPK 357

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>BDF1_YEAST (P35817) Protein BDF1|
          Length = 686

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 43/182 (23%), Positives = 89/182 (48%), Gaps = 5/182 (2%)
 Frame = +1

Query: 82  KGMPDLMRQLAGIIRQITSHE---WSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKM 252
           K +   M+    +++++ + +   ++ PFL+PVD V + L  Y   + +PMD  TI  K+
Sbjct: 312 KRLQQAMKFCQSVLKELMAKKHASYNYPFLEPVDPVSMNLPTYFDYVKEPMDLGTIAKKL 371

Query: 253 EGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENE 432
              +  +Y+++ +   DVRL+F N  T+N +   V++M   L + F  KW    P +++ 
Sbjct: 372 ---NDWQYQTMEDFERDVRLVFKNCYTFNPDGTIVNMMGHRLEEVFNSKWAD-RPNLDDY 427

Query: 433 ERKHVEPNDAPTTDTSPEDAIAKLAKD--TDDELNEINRQLEELRNMVVQRCKKMTTDEK 606
           +            D   E + + + +   T+  +  +  QL  ++ + +Q+ KK   ++ 
Sbjct: 428 DSDEDSRTQGDYDDYESEYSESDIDETIITNPAIQYLEEQLARMK-VELQQLKKQELEKI 486

Query: 607 RK 612
           RK
Sbjct: 487 RK 488



 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
 Frame = +1

Query: 154 PFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMT 333
           PFLQPVD V L +  Y   I +PMD STI+ K+   +   Y+   +I  D  L+ NN++ 
Sbjct: 172 PFLQPVDPVKLDIPFYFNYIKRPMDLSTIERKL---NVGAYEVPEQITEDFNLMVNNSIK 228

Query: 334 YNDEHHDVHIMAKLLLDKFEEKWLQL----LPKVENEERKHVEPNDAP 465
           +N  +  +  MA+ +   FE+  L +     P V  + R+     DAP
Sbjct: 229 FNGPNAGISQMARNIQASFEKHMLNMPAKDAPPVIAKGRRSSAQEDAP 276

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>BAZ2B_HUMAN (Q9UIF8) Bromodomain adjacent to zinc finger domain 2B (hWALp4)|
          Length = 1972

 Score = 63.5 bits (153), Expect = 5e-10
 Identities = 34/95 (35%), Positives = 56/95 (58%)
 Frame = +1

Query: 118  IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
            I+ ++ +HE + PFL PV++    +  Y K+I KPMDFSTI+ K+      +Y ++    
Sbjct: 1876 ILTEMETHEDAWPFLLPVNLK--LVPGYKKVIKKPMDFSTIREKLSSG---QYPNLETFA 1930

Query: 298  SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKW 402
             DVRL+F+N  T+N++  D+      +   FE+KW
Sbjct: 1931 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 1965

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>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)|
          Length = 2441

 Score = 60.8 bits (146), Expect = 3e-09
 Identities = 39/101 (38%), Positives = 53/101 (52%)
 Frame = +1

Query: 97   LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKY 276
            LM  L  + RQ      S PF QPVD   L + DY  I+  PMD STI+ K+   D  +Y
Sbjct: 1095 LMPTLEALYRQDPE---SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKL---DTGQY 1148

Query: 277  KSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEK 399
            +   +   DVRL+FNNA  YN +   V+     L + FE++
Sbjct: 1149 QEPWQYVDDVRLMFNNAWLYNRKTSRVYKFCSKLAEVFEQE 1189

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>GCN5_YEAST (Q03330) Histone acetyltransferase GCN5 (EC 2.3.1.48)|
          Length = 439

 Score = 60.1 bits (144), Expect = 5e-09
 Identities = 33/97 (34%), Positives = 53/97 (54%)
 Frame = +1

Query: 109 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVR 288
           +  I+ ++ +H  + PFLQPV+    ++ DY+  I +PMD ST++ K+E     KY+ + 
Sbjct: 336 IQNILTELQNHAAAWPFLQPVNKE--EVPDYYDFIKEPMDLSTMEIKLESN---KYQKME 390

Query: 289 EIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEK 399
           +   D RL+FNN   YN E+   +  A  L   F  K
Sbjct: 391 DFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNK 427

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>TIF1A_MOUSE (Q64127) Transcription intermediary factor 1-alpha (TIF1-alpha)|
            (Tripartite motif protein 24)
          Length = 1051

 Score = 59.7 bits (143), Expect = 7e-09
 Identities = 45/133 (33%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
 Frame = +1

Query: 139  HEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIF 318
            HE S  F  PV    L + DY+KII  PMD STI+ +++ +D   Y    +  +D RLIF
Sbjct: 919  HEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQ-EDYCMYTKPEDFVADFRLIF 974

Query: 319  NNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLP--KVENEERKHVEPNDAPTTDTSPEDA 492
             N   +N+   +V      L   FEE    L P  +    E +H E  D   +D S +D 
Sbjct: 975  QNCAEFNEPDSEVANAGIKLESYFEELLKNLYPEKRFPKVEFRH-EAEDCKFSDDSDDDF 1033

Query: 493  I---AKLAKDTDD 522
            +    K  K T+D
Sbjct: 1034 VQPRKKRLKSTED 1046

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>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)|
            (Tripartite motif protein 33)
          Length = 1142

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
 Frame = +1

Query: 103  RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKS 282
            R+   ++  +  HE S  F +PV V    + +Y+KII KPMD ST++ K++ K    Y+ 
Sbjct: 979  RKCERLLLYLYCHELSIEFQEPVPV---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQI 1035

Query: 283  VREIYSDVRLIFNNAMTYNDEHHDVHIMA-----------------KLLLDKFEEKWLQL 411
              +  +DVRLIF N   +N+    V + A                 K +   FE+K  ++
Sbjct: 1036 PDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKGDSEVAKAGKAVALYFEDKLSEI 1095

Query: 412  --------LPKVENEERKHVEPNDAPTTDTSPEDAI 495
                    LP+ E +E      +D   T+ S ED I
Sbjct: 1096 YSDRTFTPLPEFEQDE------DDGEVTEDSDEDFI 1125

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>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)|
            (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite
            motif protein 33)
          Length = 1127

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 25/156 (16%)
 Frame = +1

Query: 103  RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKS 282
            R+   ++  +  HE S  F +PV      + +Y+KII KPMD ST++ K++ K    Y+ 
Sbjct: 964  RKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQI 1020

Query: 283  VREIYSDVRLIFNNAMTYNDEHHDVHIMA-----------------KLLLDKFEEKWLQL 411
              +  +DVRLIF N   +N+    V + A                 K +   FE+K  ++
Sbjct: 1021 PDDFVADVRLIFKNCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEI 1080

Query: 412  --------LPKVENEERKHVEPNDAPTTDTSPEDAI 495
                    LP+ E EE      +D   T+ S ED I
Sbjct: 1081 YSDRTFAPLPEFEQEE------DDGEVTEDSDEDFI 1110

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>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 58.9 bits (141), Expect = 1e-08
 Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
 Frame = +1

Query: 103  RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKS 282
            +Q   ++  I   E S PF QPVD+V  +  DY  II  PMDF T++  +   D   Y S
Sbjct: 1320 KQCKELVNLIFQCEDSEPFRQPVDLV--EYPDYRDIIDTPMDFGTVRETL---DAGNYDS 1374

Query: 283  VREIYSDVRLIFNNAMTYN-DEHHDVHIMAKLLLDKFEEK 399
              E   D+RLIF+NA  Y  ++   ++ M   L   FEEK
Sbjct: 1375 PLEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEK 1414

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>GCN5_ASHGO (Q756G9) Histone acetyltransferase GCN5 (EC 2.3.1.48)|
          Length = 452

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 32/101 (31%), Positives = 55/101 (54%)
 Frame = +1

Query: 109 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVR 288
           +  ++ ++ +H  + PFLQPV+    ++ DY++ I +PMD ST++ K+E     +Y+ + 
Sbjct: 349 MQNVLTELQNHAAAWPFLQPVNRD--EVPDYYEFIKEPMDLSTMEIKLENN---RYEKME 403

Query: 289 EIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQL 411
           +   D RLIFNN   YN E+      A  L   F  K  ++
Sbjct: 404 DFIYDARLIFNNCRAYNGENTSYFKYANRLEKFFNTKMKEI 444

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>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 43/117 (36%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
 Frame = +1

Query: 58   NGARDSHCKGM--PDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDF 231
            N  R S   G    D  RQ   ++  I   E S PF QPVD+   +  DY  II  PMDF
Sbjct: 1305 NWKRRSRASGCIESDWRRQCKALLILIFQCEDSEPFRQPVDLD--EYPDYRDIIDTPMDF 1362

Query: 232  STIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYN-DEHHDVHIMAKLLLDKFEEK 399
             T++  +E  +   Y S  E   D+RLIF+NA  Y  ++   ++ M   L   FEEK
Sbjct: 1363 GTVRETLEAGN---YDSPVEFCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEK 1416

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>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 38/101 (37%), Positives = 52/101 (51%)
 Frame = +1

Query: 97   LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKY 276
            LM  L  + RQ      S PF QPVD   L + DY  I+  PMD STI+ K+   D  +Y
Sbjct: 1094 LMPTLEALYRQDPE---SLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKL---DTGQY 1147

Query: 277  KSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEK 399
            +   +   DV L+FNNA  YN +   V+     L + FE++
Sbjct: 1148 QEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQE 1188

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>BAZ1B_HUMAN (Q9UIG0) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein)
            (WBRS9) (Williams syndrome transcription factor) (hWALP2)
          Length = 1483

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
 Frame = +1

Query: 118  IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
            I+ +I  + +S PF +PV     + +DY+ +IT PMDF T+QNK        Y+SV+E  
Sbjct: 1351 ILHKIVKYRFSWPFREPV--TRDEAEDYYDVITHPMDFQTVQNKC---SCGSYRSVQEFL 1405

Query: 298  SDVRLIFNNAMTYNDE-HHDVHIMAKL--LLDKFEEKWLQLLPKVENEERKHVEPNDAPT 468
            +D++ +F NA  YN    H +  M K    L     K L   P V  + +K  +      
Sbjct: 1406 TDMKQVFTNAEVYNCRGSHVLSCMVKTEQCLVALLHKHLPGHPYVRRKRKKFPDRLAEDE 1465

Query: 469  TDTSPE 486
             D+ PE
Sbjct: 1466 GDSEPE 1471

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>GCN5_KLULA (Q6CXW4) Histone acetyltransferase GCN5 (EC 2.3.1.48)|
          Length = 516

 Score = 57.4 bits (137), Expect = 3e-08
 Identities = 31/97 (31%), Positives = 53/97 (54%)
 Frame = +1

Query: 109 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVR 288
           +  ++ ++ +H  + PFLQPV+    ++ DY++ I +PMD S+++ K+   +G +Y+ + 
Sbjct: 413 MQNLLTELQNHAAAWPFLQPVNKE--EVPDYYEFIKEPMDLSSMEMKL---NGNRYEKME 467

Query: 289 EIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEK 399
               D RLIFNN   YN E+      A  L   F  K
Sbjct: 468 NFIYDARLIFNNCRAYNGENTSYFKYANRLEKFFNSK 504

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>TIF1A_HUMAN (O15164) Transcription intermediary factor 1-alpha (TIF1-alpha)|
            (Tripartite motif protein 24) (RING finger protein 82)
          Length = 1050

 Score = 57.0 bits (136), Expect = 5e-08
 Identities = 48/159 (30%), Positives = 73/159 (45%)
 Frame = +1

Query: 139  HEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIF 318
            HE S  F  PV    L + DY+KII  PMD STI+ +++ +D + Y    +  +D RLIF
Sbjct: 918  HEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQ-EDYSMYSKPEDFVADFRLIF 973

Query: 319  NNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIA 498
             N   +N+   +V      L + FEE    LL  +  E+R        P  +   E    
Sbjct: 974  QNCAEFNEPDSEVANAGIKLENYFEE----LLKNLYPEKR-------FPKPEFRNESEDN 1022

Query: 499  KLAKDTDDELNEINRQLEELRNMVVQRCKKMTTDEKRKL 615
            K + D+DD+              V  R K++ + E+R+L
Sbjct: 1023 KFSDDSDDD-------------FVQPRKKRLKSIEERQL 1048

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>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)|
          Length = 2414

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 37/101 (36%), Positives = 52/101 (51%)
 Frame = +1

Query: 97   LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKY 276
            LM  L  + RQ      S PF QPVD   L + DY  I+  PMD STI+ K+   D  +Y
Sbjct: 1058 LMPTLEALYRQDPE---SLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKL---DTGQY 1111

Query: 277  KSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEK 399
            +   +   D+ L+FNNA  YN +   V+     L + FE++
Sbjct: 1112 QEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQE 1152

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>CBP1_CAEEL (P34545) Protein cbp-1|
          Length = 2056

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 31/99 (31%), Positives = 53/99 (53%)
 Frame = +1

Query: 94   DLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTK 273
            DL++ L  +  ++   E +APF  PVD   L + DYH+II +PMD  T+  K+      +
Sbjct: 868  DLIKFLLPVWEKLDKSEDAAPFRVPVDAKLLNIPDYHEIIKRPMDLETVHKKLY---AGQ 924

Query: 274  YKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKF 390
            Y++  +   D+ L+ +NA  YN ++  V+     L + F
Sbjct: 925  YQNAGQFCDDIWLMLDNAWLYNRKNSKVYKYGLKLSEMF 963

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>GCN5_CANGA (Q6FTW5) Histone acetyltransferase GCN5 (EC 2.3.1.48)|
          Length = 546

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 32/97 (32%), Positives = 53/97 (54%)
 Frame = +1

Query: 109 LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVR 288
           +  I+ ++ +H  + PFL+PV+    ++ DY++ I +PMD ST++ K+E     KY+ + 
Sbjct: 443 IQNILVELQNHAAAWPFLRPVNKE--EVPDYYEFIKEPMDLSTMELKLENN---KYEKME 497

Query: 289 EIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEK 399
           E   D RL+ NN   YN E+   +  A  L   F  K
Sbjct: 498 EFIYDARLVCNNCRLYNGENTSYYKYANRLEKFFNNK 534

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>GCN5_SCHPO (Q9UUK2) Histone acetyltransferase gcn5 (EC 2.3.1.48)|
          Length = 454

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 9/116 (7%)
 Frame = +1

Query: 79  CKGMPDLMRQ---------LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDF 231
           CK M +L ++         L  +  ++ +H  S PF+QPV      + DY+++I  PMD 
Sbjct: 333 CKEMEELSKKPRPKPFFAVLEMLFTEMQNHPSSWPFMQPVSKE--DVPDYYEVIEHPMDL 390

Query: 232 STIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEK 399
           ST++ ++      +Y+SV E   D + IF+N  +YND +   +  A  L   F++K
Sbjct: 391 STMEFRLRNN---QYESVEEFIRDAKYIFDNCRSYNDSNTTYYKNADRLEKFFQKK 443

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>BAZ2A_HUMAN (Q9UIF9) Bromodomain adjacent to zinc finger domain 2A (Transcription|
            termination factor I-interacting protein 5)
            (TTF-I-interacting protein 5) (Tip5) (hWALp3)
          Length = 1878

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 31/95 (32%), Positives = 55/95 (57%)
 Frame = +1

Query: 118  IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
            I+ ++ SH+ + PFL+PV+     +  Y +II  PMDFST++ ++  + G  Y S  E  
Sbjct: 1778 ILMEMESHDAAWPFLEPVNP--RLVSGYRRIIKNPMDFSTMRERLL-RGG--YTSSEEFA 1832

Query: 298  SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKW 402
            +D  L+F+N  T+N++  +V     ++   FE +W
Sbjct: 1833 ADALLVFDNCQTFNEDDSEVGKAGHIMRRFFESRW 1867

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>TRI66_HUMAN (O15016) Tripartite motif protein 66|
          Length = 1214

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 8/149 (5%)
 Frame = +1

Query: 49   YAVNGARDSHCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMD 228
            Y   G R S    M D  ++   ++  +  +  S PF +PV  +      Y++II +PMD
Sbjct: 1029 YNQPGMRASPGLSMYD-QKKCEKLVLSLCCNNLSLPFHEPVSPLARH---YYQIIKRPMD 1084

Query: 229  FSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQ 408
             S I+ K++ KD   Y +  E+ SDVRL+F N   +N    +V   A   L+ F E WL+
Sbjct: 1085 LSIIRRKLQKKDPAHYTTPEEVVSDVRLMFWNCAKFNYPDSEV-AEAGRCLEVFFEGWLK 1143

Query: 409  LL--------PKVENEERKHVEPNDAPTT 471
             +        P+ E+ + + V      +T
Sbjct: 1144 EIYPEKRFAQPRQEDSDSEEVSSESGCST 1172

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>GCN5_YARLI (Q8WZM0) Histone acetyltransferase GCN5 (EC 2.3.1.48)|
          Length = 464

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 29/97 (29%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           ++ ++ +H  + PF Q V+    ++ DY+++I +PMD ST++ ++E      YK++ E  
Sbjct: 364 VLSELQNHASAWPFAQAVNRD--EVPDYYEVIKEPMDLSTMEQRLEADS---YKTMEEFV 418

Query: 298 SDVRLIFNNAMTYNDE----HHDVHIMAKLLLDKFEE 396
            D RL+FNN   YN+E    + + + + K ++ K +E
Sbjct: 419 YDARLVFNNCRAYNNETTTYYKNANKLEKFMVAKIKE 455

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>BRD8_HUMAN (Q9H0E9) Bromodomain-containing protein 8 (p120) (Skeletal muscle|
           abundant protein) (Thyroid hormone receptor coactivating
           protein 120kDa) (TrCP120)
          Length = 1235

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +1

Query: 124 RQITSHEWSAPFLQPVDVVGLQLDD----YHKIITKPMDFSTIQNKMEGKDGTKYKSVRE 291
           R   +H ++  FLQPV       DD    YH I+ +PMD STI+  +E       +S  E
Sbjct: 721 RAAANHRYANVFLQPVT------DDIAPGYHSIVQRPMDLSTIKKNIENG---LIRSTAE 771

Query: 292 IYSDVRLIFNNAMTYNDEHHDVHIMA 369
              D+ L+F NA+ YN   HDV+ MA
Sbjct: 772 FQRDIMLMFQNAVMYNSSDHDVYHMA 797



 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 27/89 (30%), Positives = 50/89 (56%)
 Frame = +1

Query: 103  RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKS 282
            + L  + + I SH +S+PFL+PV     Q   Y  ++ +PMD ++++  +      + ++
Sbjct: 1110 KTLLPVWKMIASHRFSSPFLKPVSE--RQAPGYKDVVKRPMDLTSLKRNLSKG---RIRT 1164

Query: 283  VREIYSDVRLIFNNAMTYNDEHHDVHIMA 369
            + +   D+ L+F NA+ YND  H V+ MA
Sbjct: 1165 MAQFLRDLMLMFQNAVMYNDSDHHVYHMA 1193

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>BRD8_MOUSE (Q8R3B7) Bromodomain-containing protein 8|
          Length = 951

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
 Frame = +1

Query: 124  RQITSHEWSAPFLQPVDVVGLQLDD----YHKIITKPMDFSTIQNKMEGKDGTKYKSVRE 291
            R   +H ++  FLQPV       DD    YH I+ +PMD STI+  +E       +S  E
Sbjct: 794  RAAANHRYANVFLQPVT------DDIAPGYHSIVQRPMDLSTIKKNIENG---LIRSTAE 844

Query: 292  IYSDVRLIFNNAMTYNDEHHDVHIMA 369
               D+ L+F NA+ YN   HDV+ MA
Sbjct: 845  FQRDIMLMFQNAVMYNSSDHDVYHMA 870

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>BAZ1B_MOUSE (Q9Z277) Bromodomain adjacent to zinc finger domain protein 1B|
            (Williams-Beuren syndrome chromosome region 9 protein
            homolog) (WBRS9)
          Length = 1479

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 35/107 (32%), Positives = 61/107 (57%)
 Frame = +1

Query: 100  MRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYK 279
            +++   I+ ++  + +S PF +PV     + +DY+ +I  PMDF TIQNK    +   Y+
Sbjct: 1341 LQKCEDILHKLVKYRFSWPFREPV--TRDEAEDYYDVIEHPMDFQTIQNKCSCGN---YR 1395

Query: 280  SVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPK 420
            SV+E  +D++ +F NA  YN      H+++   ++K E+  L LL K
Sbjct: 1396 SVQEFLTDMKQVFANAELYN--CRGSHVLS--CMEKTEQCLLALLQK 1438

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>BAZ2A_MOUSE (Q91YE5) Bromodomain adjacent to zinc finger domain 2A (Transcription|
            termination factor I-interacting protein 5)
            (TTF-I-interacting protein 5) (Tip5)
          Length = 1850

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 30/95 (31%), Positives = 55/95 (57%)
 Frame = +1

Query: 118  IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
            I+ ++ SH+ + PFL+PV+     +  Y ++I  PMDFST++ ++  + G  Y S  E  
Sbjct: 1750 ILMEMESHDAAWPFLEPVNP--RLVSGYRRVIKNPMDFSTMRERLL-RGG--YTSSEEFA 1804

Query: 298  SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKW 402
            +D  L+F+N  T+N++  +V     ++   FE +W
Sbjct: 1805 ADALLVFDNCQTFNEDDSEVGKAGHVMRRFFESRW 1839

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>TRI66_MOUSE (Q924W6) Tripartite motif protein 66|
          Length = 1209

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 33/97 (34%), Positives = 52/97 (53%)
 Frame = +1

Query: 118  IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
            ++  +  +  S PF +PV  +      Y++II +PMD S I+ K++ KD   Y +  E+ 
Sbjct: 1046 LVLSLCCNSLSLPFHEPVSPLARH---YYQIIKRPMDLSIIRRKLQKKDPAHYTTPEEVV 1102

Query: 298  SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQ 408
            SDVRL+F N   +N    +V   A   L+ F E WL+
Sbjct: 1103 SDVRLMFWNCAKFNYPDSEV-AEAGRCLEVFFEGWLK 1138

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>GCN5_DEBHA (Q6BGW1) Histone acetyltransferase GCN5 (EC 2.3.1.48)|
          Length = 455

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 28/74 (37%), Positives = 45/74 (60%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           ++ ++T+H  + PF  PV+    ++ DY+ +I +PMD ST++ K+E     KY S  +  
Sbjct: 354 LLSELTNHPSAWPFSTPVNKE--EVGDYYDVIKEPMDLSTMELKLEND---KYDSFDQFL 408

Query: 298 SDVRLIFNNAMTYN 339
            D RLIFNN  +YN
Sbjct: 409 YDARLIFNNCRSYN 422

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>PB1_HUMAN (Q86U86) Protein polybromo-1 (hPB1) (Polybromo-1D) (BRG1-associated|
           factor 180) (BAF180)
          Length = 1689

 Score = 52.0 bits (123), Expect = 1e-06
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE----HHDVHI 363
           DY+KII +PMD   I++ +      KY     +  D++L+F NA  YN+E    ++D HI
Sbjct: 557 DYYKIILEPMDLKIIEHNIRND---KYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHI 613

Query: 364 MAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINR 543
           + KLL    +EK  +L P  ++++    +   +  +  SP+   +K       +LNE+  
Sbjct: 614 LEKLL----KEKRKELGPLPDDDDMASPKLKLSRKSGISPKK--SKYMTPMQQKLNEV-- 665

Query: 544 QLEELRNMVVQRCKKMT 594
             E ++N   +R ++++
Sbjct: 666 -YEAVKNYTDKRGRRLS 681



 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
 Frame = +1

Query: 187  QLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE----HHD 354
            +L DY+  I KPMD   I++ M      KY+ +  +  D  ++FNNA TYN+     + D
Sbjct: 692  ELPDYYLTIKKPMDMEKIRSHMMAN---KYQDIDSMVEDFVMMFNNACTYNEPESLIYKD 748

Query: 355  VHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDE 525
              ++ K+LL+   +        +E +E  HV PN          +    +    DDE
Sbjct: 749  ALVLHKVLLETRRD--------LEGDEDSHV-PNVTLLIQELIHNLFVSVMSHQDDE 796



 Score = 40.8 bits (94), Expect = 0.003
 Identities = 19/53 (35%), Positives = 31/53 (58%)
 Frame = +1

Query: 184 LQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYND 342
           +Q  DY+ II +P+D  TI  +++      YKS+  +  D+ L+  NA TYN+
Sbjct: 215 VQYPDYYAIIKEPIDLKTIAQRIQNGS---YKSIHAMAKDIDLLAKNAKTYNE 264



 Score = 38.5 bits (88), Expect = 0.017
 Identities = 16/47 (34%), Positives = 32/47 (68%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTY 336
           DY++++++P+D   IQ K++ ++   Y  V  + +D +L+FNNA +Y
Sbjct: 83  DYYEVVSQPIDLMKIQQKLKMEE---YDDVNLLTADFQLLFNNAKSY 126



 Score = 34.3 bits (77), Expect = 0.32
 Identities = 23/102 (22%), Positives = 46/102 (45%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
           DY++ I  P+    I+ K++ ++   Y+++  +  D+ L+F NA  YN  +  ++     
Sbjct: 419 DYYQQIKMPISLQQIRTKLKNQE---YETLDHLECDLNLMFENAKRYNVPNSAIYKRVLK 475

Query: 376 LLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAK 501
           L    + K      K E   R  +E  D+  +  + +   AK
Sbjct: 476 LQQVMQAK------KKELARRDDIEDGDSMISSATSDTGSAK 511

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>PB1_CHICK (Q90941) Protein polybromo-1|
          Length = 1633

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE----HHDVHI 363
           DY+KII +PMD   I++ +      KY     +  D++L+F NA  YN+E    ++D H+
Sbjct: 555 DYYKIILEPMDLKMIEHNIRND---KYVGEEAMIDDMKLMFRNARHYNEEGSQVYNDAHM 611

Query: 364 MAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINR 543
           + K+L    +EK  +L P  E+++    +   +  +  SP+   +K       +LNE+  
Sbjct: 612 LEKIL----KEKRKELGPLPEDDDVASPKLKLSRKSGISPKK--SKYMTPMQQKLNEV-- 663

Query: 544 QLEELRNMVVQRCKKMT 594
             E ++N   +R ++++
Sbjct: 664 -YEAVKNYTDKRGRRLS 679



 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
 Frame = +1

Query: 187  QLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE----HHD 354
            +L DY+  I KP+D   I++ M      KY+ +  +  D  ++FNNA TYN+     + D
Sbjct: 690  ELPDYYITIKKPVDMEKIRSHMMAN---KYQDIDSMVEDFVMMFNNACTYNEPESLIYKD 746

Query: 355  VHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDE 525
              ++ K+LL+   E        +E +E  HV PN          +    +    DDE
Sbjct: 747  ALVLHKVLLETRRE--------IEGDEDSHV-PNVTLLIQELIHNLFVSVMSHQDDE 794



 Score = 42.4 bits (98), Expect = 0.001
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = +1

Query: 184 LQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHI 363
           +Q  DY+ II +P+D  TI  +++  +GT YKS+  +  D+ L+  NA TYN+    V  
Sbjct: 212 VQYPDYYAIIKEPIDLKTIAQRIQ--NGT-YKSIHAMAKDIDLLAKNAKTYNEPGSQVFK 268

Query: 364 MAKLLLDKFEEK 399
            A  +   F  K
Sbjct: 269 DANAIKKIFNMK 280



 Score = 38.9 bits (89), Expect = 0.013
 Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
           DY++++++P+D   IQ K++ ++   Y  V  + +D +L+FNNA  Y       +  A  
Sbjct: 84  DYYEVVSQPIDLMKIQQKLKMEE---YDDVNVLTADFQLLFNNAKAYYKPDSPEYKAACK 140

Query: 376 LLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSP---EDAIAKLAKDTDDELNEINRQ 546
           L + +     + + K + EE    E        +SP   ++ + +L +      N   R 
Sbjct: 141 LWELYLRTKNEFVQKGDAEEEDEDEEGHDSQELSSPGYLKEILEQLLEAVAVATNPSGRL 200

Query: 547 LEEL 558
           + EL
Sbjct: 201 ISEL 204



 Score = 32.3 bits (72), Expect = 1.2
 Identities = 21/102 (20%), Positives = 47/102 (46%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
           DY++ I  P+    I+ K++  +   Y+++ ++ +D+ L+F NA  YN  +  ++     
Sbjct: 417 DYYQQIKTPISLQQIRAKLKNHE---YETLDQLEADLNLMFENAKRYNVPNSAIYKRVLK 473

Query: 376 LLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAK 501
           +    + K      K E   R  +E  D+  +  + +   +K
Sbjct: 474 MQQVMQAK------KKELARRDDIEDGDSMISSATSDTGSSK 509

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>TAF1_HUMAN (P21675) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 250 kDa
            subunit) (TAF(II)250) (TAFII-250) (TAFII250)
            (TBP-associated factor 250 kDa) (p250) (Cell cycle gene 1
            protein)
          Length = 1872

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 35/117 (29%), Positives = 57/117 (48%)
 Frame = +1

Query: 88   MPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDG 267
            M  L   L  II  +     + PF  PV+   ++  DY+KIIT+PMD  T++  +  +  
Sbjct: 1382 MVTLSSILESIINDMRDLPNTYPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRKR-- 1437

Query: 268  TKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEER 438
              Y S  E    + LI  N+ TYN   H +  +++ +LD  +EK  +   K+   E+
Sbjct: 1438 -LYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEK 1493



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 24/64 (37%), Positives = 33/64 (51%)
 Frame = +1

Query: 148  SAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNA 327
            S PF  PV+   +   DY+K+I  PMD  TI+  +      KY+S      DV LI  N+
Sbjct: 1525 SWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKH---KYQSRESFLDDVNLILANS 1579

Query: 328  MTYN 339
            + YN
Sbjct: 1580 VKYN 1583

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>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC 3.6.1.-)|
            (ATP-dependent helicase SMARCA2) (SNF2-alpha)
            (SWI/SNF-related matrix associated actin dependent
            regulator of chromatin subfamily A member 2) (hBRM)
          Length = 1586

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 26/106 (24%), Positives = 57/106 (53%)
 Frame = +1

Query: 187  QLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIM 366
            +L +Y+++I KP+DF  I+ ++      KY+S+ ++  DV L+ +NA T+N E   ++  
Sbjct: 1431 ELPEYYELIRKPVDFKKIKERIRNH---KYRSLGDLEKDVMLLCHNAQTFNLEGSQIYED 1487

Query: 367  AKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKL 504
            + +L   F+    ++  + E+E+  + E  +    ++  E    K+
Sbjct: 1488 SIVLQSVFKSARQKIAKEEESEDESNEEEEEEDEEESESEAKSVKV 1533

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>TAF1L_HUMAN (Q8IZX4) Transcription initiation factor TFIID 210 kDa subunit|
            (TBP-associated factor 210 kDa) (TAF(II)210)
            (TBP-associated factor 1-like)
          Length = 1826

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 35/117 (29%), Positives = 56/117 (47%)
 Frame = +1

Query: 88   MPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDG 267
            M  L   L  II  +     + PF  PV+   ++  DY+KIIT+PMD  T++  +     
Sbjct: 1401 MVTLSSILESIINDMRDLPNTHPFHTPVNAKVVK--DYYKIITRPMDLQTLRENVRK--- 1455

Query: 268  TKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEER 438
              Y S  E    + LI  N+ TYN   H +  +++ +LD  +EK  +   K+   E+
Sbjct: 1456 CLYPSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEK 1512



 Score = 37.4 bits (85), Expect = 0.037
 Identities = 23/64 (35%), Positives = 33/64 (51%)
 Frame = +1

Query: 148  SAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNA 327
            S PF  PV+   +   DY+K+I  P+D  TI+  +      KY+S      DV LI  N+
Sbjct: 1544 SWPFHHPVNKKFVP--DYYKMIVNPVDLETIRKNISKH---KYQSRESFLDDVNLILANS 1598

Query: 328  MTYN 339
            + YN
Sbjct: 1599 VKYN 1602

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>CECR2_HUMAN (Q9BXF3) Cat eye syndrome critical region protein 2|
          Length = 1484

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 29/100 (29%), Positives = 52/100 (52%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           ++  + +H+ S PFL+PVD       +Y++II  PMD S+++ K+   +G  Y +  E  
Sbjct: 446 VLDVVKAHKDSWPFLEPVDES--YAPNYYQIIKAPMDISSMEKKL---NGGLYCTKEEFV 500

Query: 298 SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLP 417
           +D++ +F N   YN E  +   M+  L   F    ++  P
Sbjct: 501 NDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMKHFP 540

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>BRD7_PONPY (Q5R8B0) Bromodomain-containing protein 7|
          Length = 651

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 33/95 (34%), Positives = 48/95 (50%)
 Frame = +1

Query: 97  LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKY 276
           L   L  ++RQ+   + SA F  PV         Y  II  PMDFST++ K++  D   Y
Sbjct: 136 LQEALNQLMRQLQRKDPSAFFSFPV--TDFIAPGYSMIIKHPMDFSTMKEKIKNND---Y 190

Query: 277 KSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLL 381
           +S+ E+  + +L+  NAM YN      +  AK LL
Sbjct: 191 QSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 225

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>BRD7_MOUSE (O88665) Bromodomain-containing protein 7 (75 kDa bromodomain|
           protein)
          Length = 651

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 33/95 (34%), Positives = 48/95 (50%)
 Frame = +1

Query: 97  LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKY 276
           L   L  ++RQ+   + SA F  PV         Y  II  PMDFST++ K++  D   Y
Sbjct: 136 LQEALNQLMRQLQRKDPSAFFSFPV--TDFIAPGYSMIIKHPMDFSTMKEKIKNND---Y 190

Query: 277 KSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLL 381
           +S+ E+  + +L+  NAM YN      +  AK LL
Sbjct: 191 QSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 225

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>BRD7_HUMAN (Q9NPI1) Bromodomain-containing protein 7 (75 kDa bromodomain|
           protein) (Protein CELTIX-1)
          Length = 651

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 33/95 (34%), Positives = 48/95 (50%)
 Frame = +1

Query: 97  LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKY 276
           L   L  ++RQ+   + SA F  PV         Y  II  PMDFST++ K++  D   Y
Sbjct: 136 LQEALNQLMRQLQRKDPSAFFSFPV--TDFIAPGYSMIIKHPMDFSTMKEKIKNND---Y 190

Query: 277 KSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLL 381
           +S+ E+  + +L+  NAM YN      +  AK LL
Sbjct: 191 QSIEELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 225

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>PCAF_HUMAN (Q92831) Histone acetyltransferase PCAF (EC 2.3.1.48)|
            (P300/CBP-associated factor) (P/CAF) (Histone acetylase
            PCAF)
          Length = 832

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
 Frame = +1

Query: 91   PD-LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDG 267
            PD L   L  I++Q+ SH+ + PF++PV     +   Y+++I  PMD  T+  +++ +  
Sbjct: 725  PDQLYSTLKSILQQVKSHQSAWPFMEPVK--RTEAPGYYEVIRFPMDLKTMSERLKNR-- 780

Query: 268  TKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKF 390
              Y S +   +D++ +F N   YN    + +  A  +L+KF
Sbjct: 781  -YYVSKKLFMADLQRVFTNCKEYNPPESEYYKCAN-ILEKF 819

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>SNF22_SCHPO (O94421) SNF2-family ATP dependent chromatin remodeling factor snf22|
            (EC 3.6.1.-) (ATP-dependent helicase snf22)
          Length = 1680

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 28/89 (31%), Positives = 47/89 (52%)
 Frame = +1

Query: 196  DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
            DY+ II +P+    I+  ++     +Y  V E+ +D  L+FNNA TYN+EH  V+  AKL
Sbjct: 1555 DYYIIIKRPIALGKIKRNIKND---RYGDVGELIADFMLMFNNAYTYNEEHSIVYEDAKL 1611

Query: 376  LLDKFEEKWLQLLPKVENEERKHVEPNDA 462
            +    E+   +++  +E     H    +A
Sbjct: 1612 M----EKTLKEVIEDLEKNNSLHAYEEEA 1636

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>BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing protein 3|
          Length = 1205

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 28/76 (36%), Positives = 42/76 (55%)
 Frame = +1

Query: 157 FLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTY 336
           F +PV++   ++ DY + I+KPMDFST++ K+E      Y+++ E   D  LI  N M Y
Sbjct: 614 FAEPVNLS--EVPDYLEFISKPMDFSTMRRKLESH---LYRTLEEFEEDFNLIVTNCMKY 668

Query: 337 NDEHHDVHIMAKLLLD 384
           N +    H  A  L D
Sbjct: 669 NAKDTIFHRAAVRLRD 684

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>TAF1_DROME (P51123) Transcription initiation factor TFIID subunit 1 (EC|
            2.7.11.1) (Transcription initiation factor TFIID 230 kDa
            subunit) (TAFII-230) (TAFII250) (TBP-associated factor
            230 kDa) (p230)
          Length = 2129

 Score = 47.0 bits (110), Expect = 5e-05
 Identities = 36/122 (29%), Positives = 58/122 (47%)
 Frame = +1

Query: 127  QITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDV 306
            QI     S PFL+PV+    Q+ DY+ +I +PMD  TI   +E     +Y S  E  +D+
Sbjct: 1607 QIKQLPESWPFLKPVNKK--QVKDYYTVIKRPMDLETIGKNIEAH---RYHSRAEYLADI 1661

Query: 307  RLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPE 486
             LI  N   YN         +K +L+  + + ++      +E    +E N A T + + E
Sbjct: 1662 ELIATNCEQYNGSDTRYTKFSKKILEYAQTQLIEF-----SEHCGQLENNIAKTQERARE 1716

Query: 487  DA 492
            +A
Sbjct: 1717 NA 1718



 Score = 40.4 bits (93), Expect = 0.004
 Identities = 20/63 (31%), Positives = 37/63 (58%)
 Frame = +1

Query: 151  APFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAM 330
            +PFL PV     ++ DY++++TKPMD  T++  +  +   +Y S      D++ I +N++
Sbjct: 1493 SPFLFPVSAK--KVPDYYRVVTKPMDLQTMREYIRQR---RYTSREMFLEDLKQIVDNSL 1547

Query: 331  TYN 339
             YN
Sbjct: 1548 IYN 1550

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>BRD1_HUMAN (O95696) Bromodomain-containing protein 1 (BR140-like protein)|
          Length = 1058

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 7/175 (4%)
 Frame = +1

Query: 109  LAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVR 288
            L  ++ Q+   + +  F QPV +   ++ DY   I  PMDF+T++ ++E +    YK++ 
Sbjct: 571  LRSVLDQLQDKDPARIFAQPVSLK--EVPDYLDHIKHPMDFATMRKRLEAQG---YKNLH 625

Query: 289  EIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVEN---EERKHV---- 447
            E   D  LI +N M YN      +  A  L D+      Q   +V++   EE   +    
Sbjct: 626  EFEEDFDLIIDNCMKYNARDTVFYRAAVRLRDQGGVVLRQARREVDSIGLEEASGMHLPE 685

Query: 448  EPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQRCKKMTTDEKRK 612
             P  AP    S ED + +L    +     +  QL EL +M+   C   ++  + K
Sbjct: 686  RPAAAPRRPFSWED-VDRLLDPANRAHLGLEEQLRELLDMLDLTCAMKSSGSRSK 739

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>BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain protein 1A|
            (ATP-utilizing chromatin assembly and remodeling factor
            1) (hACF1) (ATP-dependent chromatin remodelling protein)
            (Williams syndrome transcription factor-related chromatin
            remodeli
          Length = 1556

 Score = 46.2 bits (108), Expect = 8e-05
 Identities = 28/93 (30%), Positives = 48/93 (51%)
 Frame = +1

Query: 61   GARDSHCKGMPDLMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTI 240
            G R S  +G    +     ++ ++  H+ S PFL+ V  +  Q+ DY+ II KP+  + I
Sbjct: 1422 GRRSSGRQGGVHELSAFEQLVVELVRHDDSWPFLKLVSKI--QVPDYYDIIKKPIALNII 1479

Query: 241  QNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYN 339
            + K+   +  +YK   E   D+ L+F+N   YN
Sbjct: 1480 REKV---NKCEYKLASEFIDDIELMFSNCFEYN 1509

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>BRD7_CHICK (Q5ZKG2) Bromodomain-containing protein 7|
          Length = 651

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 32/95 (33%), Positives = 48/95 (50%)
 Frame = +1

Query: 97  LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKY 276
           L   L  ++RQ+   + S+ F  PV         Y  II  PMDFST++ K++      Y
Sbjct: 136 LQEALNQLMRQLQRKDPSSFFSFPV--TDFIAPGYSMIIKNPMDFSTMKEKIKNNG---Y 190

Query: 277 KSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLL 381
           +S+ E+  + +L+  NAMTYN      +  AK LL
Sbjct: 191 QSIEELKDNFKLMCTNAMTYNKPDTIYYKAAKKLL 225

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>ATAD2_MOUSE (Q8CDM1) ATPase family AAA domain-containing protein 2|
          Length = 1040

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
 Frame = +1

Query: 94   DLMRQLAGIIRQITSH----EWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGK 261
            D  R+L   +R +T      +    F +PVD    ++ DY  +I +PMD S++ +K+   
Sbjct: 633  DTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKI--- 687

Query: 262  DGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAK------------LLLDKFEEKWL 405
            D  KY +V++   D+ LI +NA+ YN +      + +            ++ ++ +E + 
Sbjct: 688  DLHKYLTVKDYLKDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFE 747

Query: 406  QLLPKVENEERK-------------HVEP--NDAPTTDTSPE 486
            QL  +++   +K             HV P  N  P  D  P+
Sbjct: 748  QLCEEIQESRKKRGCSSSKYAPSYYHVMPKQNSPPVGDKKPD 789

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>BRD1_SCHPO (Q09948) Bromodomain protein brd1|
          Length = 542

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 22/48 (45%), Positives = 33/48 (68%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYN 339
           DY++II KP+ +  ++NK   K G KY S+ + Y D+RL+ +NA TYN
Sbjct: 48  DYYQIIQKPICYKMMRNK--AKTG-KYLSMGDFYDDIRLMVSNAQTYN 92



 Score = 36.6 bits (83), Expect = 0.064
 Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYN-------DEHHD 354
           DY++II  PM    ++ +   K G +Y ++     D+  +F NA TYN       ++   
Sbjct: 181 DYYEIIKSPMTIKMLEKRF--KKG-EYTTLESFVKDLNQMFINAKTYNAPGSFVYEDAEK 237

Query: 355 VHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDT 516
           +  ++  L+  F E+     PK  +      EP + P + T    A     + T
Sbjct: 238 LSQLSSSLISSFSEQ-----PKEHSPATSKHEPEETPASPTPSVSASTSRERST 286

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>SNF21_SCHPO (Q9UTN6) SNF2-family ATP dependent chromatin remodeling factor snf21|
            (EC 3.6.1.-) (ATP-dependent helicase snf21)
          Length = 1199

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
 Frame = +1

Query: 196  DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE----HHDVHI 363
            DY+ II  P+    I+  +   +GT YK++  + SD+  +FNNA TYN+E    + D + 
Sbjct: 1103 DYYMIIKSPIALDAIRKHI---NGTFYKTLEAMKSDLMTMFNNARTYNEEGSFVYEDANK 1159

Query: 364  MAKLLLDKFEE 396
            M   +  K EE
Sbjct: 1160 MQTAMETKIEE 1170

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>SMCA4_HUMAN (P51532) Probable global transcription activator SNF2L4 (EC 3.6.1.-)|
            (ATP-dependent helicase SMARCA4) (SNF2-beta) (BRG-1
            protein) (Mitotic growth and transcription activator)
            (Brahma protein homolog 1) (SWI/SNF-related
            matrix-associated actin
          Length = 1647

 Score = 43.5 bits (101), Expect = 5e-04
 Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
 Frame = +1

Query: 91   PDLMRQLAGIIRQITSHEWSAPFLQPVDVV-----GLQLDDYHKIITKPMDFSTIQNKME 255
            P+L +++  I+  +  ++ S+   Q  +V        +L +Y+++I KP+DF  I+ ++ 
Sbjct: 1456 PNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIKERIR 1515

Query: 256  GKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEE 435
                 KY+S+ ++  DV L+  NA T+N E   ++  + +L   F      +  K+E E+
Sbjct: 1516 NH---KYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF----TSVRQKIEKED 1568

Query: 436  RKHVEPND 459
                E ++
Sbjct: 1569 DSEGEESE 1576

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>ATAD2_PONPY (Q5RDX4) ATPase family AAA domain-containing protein 2|
          Length = 1091

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = +1

Query: 94   DLMRQLAGIIRQITSH----EWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGK 261
            D  R+L   +R +T      +    F +PVD    ++ DY  +I +PMD S++ +K+   
Sbjct: 815  DTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKI--- 869

Query: 262  DGTKYKSVREIYSDVRLIFNNAMTYNDE 345
            D  KY +V++   D+ LI +NA+ YN +
Sbjct: 870  DLHKYLTVKDYLRDIDLICSNALEYNPD 897

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>STH1_YEAST (P32597) Nuclear protein STH1/NPS1 (EC 3.6.1.-) (ATP-dependent|
            helicase STH1) (Chromatin structure remodeling complex
            protein STH1) (SNF2 homolog)
          Length = 1359

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 25/71 (35%), Positives = 41/71 (57%)
 Frame = +1

Query: 196  DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
            DY K+I KPM    I      K+GT YK++ E+   ++ +F NA  YN+E   V++ A  
Sbjct: 1289 DYFKVIEKPMAIDIILKNC--KNGT-YKTLEEVRQALQTMFENARFYNEEGSWVYVDAD- 1344

Query: 376  LLDKFEEKWLQ 408
             L++F ++W +
Sbjct: 1345 KLNEFTDEWFK 1355

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>ATAD2_HUMAN (Q6PL18) ATPase family AAA domain-containing protein 2|
          Length = 1390

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
 Frame = +1

Query: 94   DLMRQLAGIIRQITSH----EWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGK 261
            D  R+L   +R +T      +    F +PVD    ++ DY  +I +PMD S++ +K+   
Sbjct: 984  DTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPD--EVPDYVTVIKQPMDLSSVISKI--- 1038

Query: 262  DGTKYKSVREIYSDVRLIFNNAMTYNDE 345
            D  KY +V++   D+ LI +NA+ YN +
Sbjct: 1039 DLHKYLTVKDYLRDIDLICSNALEYNPD 1066

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>RSC2_YEAST (Q06488) Chromatin structure remodeling complex protein RSC2|
           (Remodel the structure of chromatin complex subunit 2)
          Length = 889

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
           DY+ +I  P+ F+T++ ++       Y   ++  +DV  I  NA TYN     ++  A +
Sbjct: 54  DYYAVIKNPVSFNTLKKRI-----PHYTDAQQFMNDVVQIPWNAKTYNTRDSGIYKYALV 108

Query: 376 LLDKFEEKWLQ--LLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQL 549
           L     EK+L+  + P ++ +  + V P+  P  D    +   +  ++  +E+   N   
Sbjct: 109 L-----EKYLKDTIYPNLKEKYPQLVYPDLGPLPDEPGYEEFQQKLREKAEEVARANAAR 163

Query: 550 EELRNMV-----VQRCKKMTTDEKRKLGAG 624
            E  + +      +R +K  T  KR+   G
Sbjct: 164 AESSSSMNSTEAARRLRKTRTSVKRESEPG 193

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>BAZ1A_XENLA (Q8UVR5) Bromodomain adjacent to zinc finger domain 1A|
           (ATP-utilizing chromatin assembly and remodely factor 1)
           (xACF1) (Fragment)
          Length = 627

 Score = 39.3 bits (90), Expect = 0.010
 Identities = 23/79 (29%), Positives = 43/79 (54%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           ++ ++  H+ S PF++ V     Q+ DY  +I +P+  + I+ K+   +  +YK   E  
Sbjct: 513 LVVELVRHDDSWPFMRLVSKN--QVPDYFDVIQRPIALNLIREKV---NKCEYKCASEFI 567

Query: 298 SDVRLIFNNAMTYNDEHHD 354
            DV L+++N   YN  HH+
Sbjct: 568 DDVHLMWSNCFEYN--HHN 584

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>GCNL2_HUMAN (Q92830) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (hsGCN5)
           (STAF97)
          Length = 837

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +1

Query: 91  PD-LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDG 267
           PD L   L  ++ QI SH  + PF++PV     +  DY+++I  P+D  T+  ++     
Sbjct: 730 PDQLYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLR---- 783

Query: 268 TKYKSVREIY-SDVRLIFNNAMTYN 339
           ++Y   R+++ +D++ +  N   YN
Sbjct: 784 SRYYVTRKLFVADLQRVIANCREYN 808

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>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5)
          Length = 830

 Score = 38.9 bits (89), Expect = 0.013
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
 Frame = +1

Query: 91  PD-LMRQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDG 267
           PD L   L  ++ QI SH  + PF++PV     +  DY+++I  P+D  T+  ++     
Sbjct: 723 PDQLYTTLKNLLAQIKSHPSAWPFMEPVK--KSEAPDYYEVIRFPIDLKTMTERLR---- 776

Query: 268 TKYKSVREIY-SDVRLIFNNAMTYN 339
           ++Y   R+++ +D++ +  N   YN
Sbjct: 777 SRYYVTRKLFVADLQRVIANCREYN 801

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>K1240_HUMAN (Q9ULI0) Protein KIAA1240 (Fragment)|
          Length = 733

 Score = 38.5 bits (88), Expect = 0.017
 Identities = 18/52 (34%), Positives = 31/52 (59%)
 Frame = +1

Query: 190 LDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE 345
           + DY ++I +PMD ST+  K+   D   Y + ++   D+ LI +NA+ YN +
Sbjct: 267 VSDYLEVIKEPMDLSTVITKI---DKHNYLTAKDFLKDIDLICSNALEYNPD 315

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>RSC1_YEAST (P53236) Chromatin structure remodeling complex protein RSC1|
           (Remodel the structure of chromatin complex subunit 1)
          Length = 928

 Score = 38.1 bits (87), Expect = 0.022
 Identities = 33/117 (28%), Positives = 55/117 (47%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
           DY+ II  P+  +T++ ++       Y S ++  +D   I  NAMTYN +   ++  A +
Sbjct: 46  DYYIIIRNPISLNTLKKRLP-----HYTSPQDFVNDFAQIPWNAMTYNAKDSVIYKYA-I 99

Query: 376 LLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQ 546
           LL+ F      +  K+ +  RKH      P+    PE   A+  + +D   N IN Q
Sbjct: 100 LLESF------IKGKIVHNIRKHYPEVTYPSLGRIPE-IFAESMQPSDLSSNPINTQ 149

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>RAD50_SULAC (O33600) DNA double-strand break repair rad50 ATPase|
          Length = 886

 Score = 37.4 bits (85), Expect = 0.037
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 18/142 (12%)
 Frame = +1

Query: 205 KIITKPMDFSTIQNKMEGKDGTKYK-----------SVREIYSDVRLIFNNAMTYN---- 339
           KIIT     +T+ NK++   G  +K           SV  ++SD   +    +  N    
Sbjct: 103 KIITLARQSTTVNNKIKEILGFDHKILMSTTIIGQGSVESVFSDFPEVMKELLKINKLEM 162

Query: 340 --DEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPE-DAIAKLAK 510
             + +  +H + K+L D+     LQ +  +   E   ++       +   + + I + AK
Sbjct: 163 LRESNGPIHSLIKVLTDRIRS--LQSIKDILKREEAEIDRLKKEIEEIKVKLENIEREAK 220

Query: 511 DTDDELNEINRQLEELRNMVVQ 576
           + +DELN+ N +   ++ + VQ
Sbjct: 221 EKEDELNQYNTEFNRIKEIKVQ 242

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>RSC1_SCHPO (O74964) Chromatin structure remodeling complex protein rsc1|
           (Remodel the structure of chromatin complex subunit 1)
          Length = 803

 Score = 37.4 bits (85), Expect = 0.037
 Identities = 18/61 (29%), Positives = 33/61 (54%)
 Frame = +1

Query: 196 DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKL 375
           +Y++ I +PM    IQ K+      +Y+++ +   D  L+F+NA ++ND    V+  A  
Sbjct: 248 EYYQAIEQPMALEVIQKKLSKH---RYETIEQFVDDFNLMFDNAKSFNDPSSQVYRDADF 304

Query: 376 L 378
           L
Sbjct: 305 L 305

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>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent helicase|
            brm) (Protein brahma)
          Length = 1638

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 187  QLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE 345
            +L DY++II +P+D   I  ++E     KY  + E+  D   +  NA  YN+E
Sbjct: 1459 RLPDYYEIIKRPVDIKKILQRIE---DCKYADLNELEKDFMQLCQNAQIYNEE 1508

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>SNF2_YEAST (P22082) Transcription regulatory protein SNF2 (EC 3.6.1.-)|
            (ATP-dependent helicase SNF2) (SWI/SNF complex component
            SNF2) (Regulatory protein SWI2) (Regulatory protein GAM1)
            (Transcription factor TYE3)
          Length = 1703

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 196  DYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDE 345
            DY+ II  P+ F  I   +E      Y S++E   D  LIF+NA  YN E
Sbjct: 1587 DYYMIIKYPVAFDNINTHIET---LAYNSLKETLQDFHLIFSNARIYNTE 1633

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>RSC4_YEAST (Q02206) Chromatin structure remodeling complex protein RSC4|
           (Remodel the structure of chromatin complex subunit 4)
          Length = 625

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 23/81 (28%), Positives = 42/81 (51%)
 Frame = +1

Query: 148 SAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNA 327
           S PF++ VD    +L +Y++I+  PM  S ++  +E     +Y  + +   D+ L+F NA
Sbjct: 210 SEPFMELVDKD--ELPEYYEIVHSPMALSIVKQNLEIG---QYSKIYDFIIDMLLVFQNA 264

Query: 328 MTYNDEHHDVHIMAKLLLDKF 390
             +ND    ++  A  L + F
Sbjct: 265 HIFNDPSALIYKDATTLTNYF 285

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>DPOL_BPT4 (P04415) DNA polymerase (EC 2.7.7.7) (Gp43)|
          Length = 898

 Score = 35.8 bits (81), Expect = 0.11
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +1

Query: 340 DEHHDVHI---MAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAK 510
           D+H +  I   +AK+   + + K      ++  E  K +    A +  T PE  + +  K
Sbjct: 461 DKHQEGIIPKEIAKVFFQRKDWKKKMFAEEMNAEAIKKIIMKGAGSCSTKPE--VERYVK 518

Query: 511 DTDDELNEINRQLEELRNMVVQRCKKMTT 597
            +DD LNE++   E + N +++ C+K  T
Sbjct: 519 FSDDFLNELSNYTESVLNSLIEECEKAAT 547

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>BRPF1_HUMAN (P55201) Peregrin (Bromodomain and PHD finger-containing protein 1)|
           (BR140 protein)
          Length = 1214

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +1

Query: 121 IRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYS 300
           + Q+   +    F +PV +   ++ DY   I KPMDF T++  +E     +Y +  +   
Sbjct: 641 LEQLQEKDTGNIFSEPVPLS--EVPDYLDHIKKPMDFFTMKQNLE---AYRYLNFDDFEE 695

Query: 301 DVRLIFNNAMTYN 339
           D  LI +N + YN
Sbjct: 696 DFNLIVSNCLKYN 708

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>PKCB1_HUMAN (Q9ULU4) Protein kinase C-binding protein 1 (Rack7) (Cutaneous|
           T-cell lymphoma associated antigen se14-3) (CTCL tumor
           antigen se14-3) (Zinc finger MYND domain containing
           protein 8)
          Length = 1186

 Score = 33.9 bits (76), Expect = 0.41
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = +1

Query: 157 FLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTY 336
           F +PV +   Q  DY + I  PMD  T++   + K    Y       +D + I +N + Y
Sbjct: 173 FQKPVPLE--QHPDYAEYIFHPMDLCTLEKNAKKK---MYGCTEAFLADAKWILHNCIIY 227

Query: 337 NDEHHDVHIMAKLLL 381
           N  +H +  +AK+++
Sbjct: 228 NGGNHKLTQIAKVVI 242

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>TBP7_CAEEL (P54816) TAT-binding homolog 7|
          Length = 1242

 Score = 33.5 bits (75), Expect = 0.54
 Identities = 20/61 (32%), Positives = 35/61 (57%)
 Frame = +1

Query: 157  FLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTY 336
            F++PVD    + +DY++II  P+    +Q+ ME  +  +Y    +  +D+ LI  NA+ Y
Sbjct: 890  FVEPVDPD--EAEDYYEIIETPI---CMQDIMEKLNNCEYNHADKFVADLILIQTNALEY 944

Query: 337  N 339
            N
Sbjct: 945  N 945

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>LIN49_CAEEL (Q20318) Protein lin-49 (Abnormal cell lineage protein 49)|
          Length = 1042

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 20/74 (27%), Positives = 38/74 (51%)
 Frame = +1

Query: 118 IIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIY 297
           +I  + + +    F +PV++VG     Y  II  P+    +++  E     KY +V  + 
Sbjct: 521 VIEALKTIDAGKVFAEPVELVG-----YTDIIENPI---CLKDMSEKAASGKYSTVAALS 572

Query: 298 SDVRLIFNNAMTYN 339
           +DV+L+ +N  T+N
Sbjct: 573 ADVQLMLSNCATFN 586

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>DYHC_CAEEL (Q19020) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4568

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 2/112 (1%)
 Frame = +1

Query: 298  SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDT 477
            +D  L FN      D   +V       L +  ++WLQLLPK   + R+ VE    P    
Sbjct: 4295 TDEELAFNE-----DGKEEVKPQWMAQLGELAKQWLQLLPKEIVKMRRTVENIKDPLFRF 4349

Query: 478  SPEDAI--AKLAKDTDDELNEINRQLEELRNMVVQRCKKMTTDEKRKLGAGL 627
               +    ++L KD   +LNEI+          V R +K   +E R L A L
Sbjct: 4350 FEREVNLGSQLLKDIRRDLNEIS---------AVCRAEKKQNNETRALAASL 4392

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>ARGR2_YEAST (P05085) Arginine metabolism regulation protein II|
          Length = 880

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 5/151 (3%)
 Frame = +1

Query: 160 LQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYN 339
           +  +DVV   + D    +    DF   + K+      K K++  I+S ++LI ++     
Sbjct: 511 MNSIDVVWGTMADCQDHLALCEDFVESRMKLRPNISEKTKTLHRIFSFLKLIQDSTA--- 567

Query: 340 DEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSP-----EDAIAKL 504
                        LDK   K + +LP  E++  K ++ ++A T+ + P     ++ + + 
Sbjct: 568 -------------LDKVRAKEIVILPSEEDDNYKPLDTSNATTSSSEPRVDVVQEGLFRE 614

Query: 505 AKDTDDELNEINRQLEELRNMVVQRCKKMTT 597
           A + +D    I    E + N+        TT
Sbjct: 615 ALNENDGKIHIEFVKEPITNVSADSTPSSTT 645

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>LVA_DROME (Q8MSS1) Protein lava lamp|
          Length = 2779

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 424 ENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQRCKKMTTDE 603
           E E+      ++A  TD      +AK  ++  ++L ++    EELR  V  + K   TDE
Sbjct: 347 EQEKASRSPQSEAAHTDAQVSAELAKQLQELTNQLADLQATNEELRQQVAAQAKLQVTDE 406

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>MYS2_DICDI (P08799) Myosin-2 heavy chain, non muscle (Myosin II heavy chain, non|
            muscle)
          Length = 2116

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
 Frame = +1

Query: 274  YKSVREIYSDVRLIFNNAMTYNDEHH----DVHIMAKLLLDK--FEEKWLQLLPKVENEE 435
            YK  RE     R+I  N   Y D        +   A+ LL +  FE++       ++ +E
Sbjct: 782  YKQAREHTVAARIIQQNLRAYIDFKSWPWWKLFSKARPLLKRRNFEKE-------IKEKE 834

Query: 436  RKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLE 552
            R+ +E     T  T+ +D + K  KDT+  + ++ RQL+
Sbjct: 835  REILELKSNLTDSTTQKDKLEKSLKDTESNVLDLQRQLK 873

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>YID7_YEAST (P40534) Hypothetical 75.0 kDa protein in NOT3-CKA1 intergenic|
           region
          Length = 656

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 22/93 (23%), Positives = 38/93 (40%)
 Frame = +1

Query: 316 FNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAI 495
           FN  +T      D      L   +    WLQL        +  +      +T+ +   +I
Sbjct: 230 FNGTITDFSTQLDTSSTLSLNFLRNSTDWLQLKRNFTANLQNEISILSGGSTEVTSSTSI 289

Query: 496 AKLAKDTDDELNEINRQLEELRNMVVQRCKKMT 594
            K +  T+ E N +   L  ++N V ++CK+MT
Sbjct: 290 IKRSLKTNSEENSV---LSAVKNHVFRKCKRMT 319

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>Y511_METAC (Q8TTC6) Hypothetical UPF0228 protein MA0511|
          Length = 204

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 22/81 (27%), Positives = 36/81 (44%)
 Frame = +1

Query: 259 KDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEER 438
           KDG     VR I  +  +  N  MTY++   D +IMA       ++ W  +  ++ +E +
Sbjct: 49  KDGISESEVRTILQNCNMTRNYRMTYDNSSEDYYIMAD------KDNWSDIRRELVDEMK 102

Query: 439 KHVEPNDAPTTDTSPEDAIAK 501
              E N    T ++P   I K
Sbjct: 103 ---ETNKKNWTVSTPAHVIRK 120

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>GRAU_DROME (Q9U405) Transcription factor grauzone|
          Length = 570

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 17/76 (22%), Positives = 31/76 (40%)
 Frame = +1

Query: 127 QITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDV 306
           ++ +  W    L P DV+ +  D   +I   P+D   +   M  +D            D+
Sbjct: 88  EMVNTSWPEEVLMPADVLAVDNDVGAQINVNPLDELDLSQPMSPEDSKVGIKTERQSPDM 147

Query: 307 RLIFNNAMTYNDEHHD 354
            L+F +A    DE ++
Sbjct: 148 ELLFEDANNEQDEDYE 163

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>YFK8_YEAST (P43610) Hypothetical ATP-dependent helicase YFR038W (EC 3.6.1.-)|
          Length = 853

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 400 WLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQ- 576
           WLQ    V ++E   ++  D   T+      + KLAKDT  E   ++ +L E+    V  
Sbjct: 71  WLQ--DDVHSDEDIQLDSEDDSDTEAVQAQVVDKLAKDTKSEQKSLDDELSEMDTKTVSL 128

Query: 577 RCKKM 591
           + KK+
Sbjct: 129 KLKKL 133

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>USO1_YEAST (P25386) Intracellular protein transport protein USO1 (Int-1)|
          Length = 1790

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 18/179 (10%)
 Frame = +1

Query: 133  TSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSD--- 303
            TS E S      +D + LQ+ +  K             K E  + +  +S++ + S+   
Sbjct: 1213 TSEEQSNLKKSEIDALNLQIKELKK-------------KNETNEASLLESIKSVESETVK 1259

Query: 304  VRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTS- 480
            ++ + +       E  ++    K   DK   K+L+L    + E  K  E  DA TT+   
Sbjct: 1260 IKELQDECNFKEKEVSELEDKLKASEDK-NSKYLEL----QKESEKIKEELDAKTTELKI 1314

Query: 481  --------------PEDAIAKLAKDTDDELNEINRQLEELRNMVVQRCKKMTTDEKRKL 615
                           E  +++L K + +E      QLE+L+N +  + K    +++RKL
Sbjct: 1315 QLEKITNLSKAKEKSESELSRLKKTSSEERKNAEEQLEKLKNEI--QIKNQAFEKERKL 1371

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>INVO_PONPY (P14708) Involucrin|
          Length = 835

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/92 (23%), Positives = 43/92 (46%)
 Frame = +1

Query: 343 EHHDVHIMAKLLLDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDD 522
           +  + H+ A   L + E +  Q  P+ +  +++H E ++      +PE  + +     D 
Sbjct: 58  KQEEKHMTAVKGLPEQECEQQQQEPQEQELQQQHWEQHEEHQKAENPEQQLKQEKAQRDQ 117

Query: 523 ELNEINRQLEELRNMVVQRCKKMTTDEKRKLG 618
           +LNE   QLEE + ++ QR  +       +LG
Sbjct: 118 QLNE---QLEEEKKLLDQRLDQELVKRDEQLG 146

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>STAP2_MOUSE (Q8R0L1) Signal-transducing adaptor protein 2 (STAP-2)|
          Length = 411

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 198 LSQDYNKTYGFLDHPKQNGREGW 266
           L +DY K  GF+D  ++NG   W
Sbjct: 246 LDEDYEKVLGFVDSDRENGESAW 268

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>NRDC_PONPY (Q5R4H6) Nardilysin precursor (EC 3.4.24.61) (N-arginine dibasic|
           convertase) (NRD convertase) (NRD-C)
          Length = 1152

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +1

Query: 418 KVENEERKHVEPNDAPTTDTSPE--DAIAKLAKDTDDELNEINRQLEELRNMVVQRCKKM 591
           +VE EE    E + A   D   E  D   +   + DD+L+  + +LEEL      R KK 
Sbjct: 148 EVEEEEEDDDEDSGAEIEDDDEEGFDDEDEFDDEHDDDLDTEDNELEELEERAEARKKKT 207

Query: 592 TTDEKRKLGAGLC 630
           T   +++  A LC
Sbjct: 208 T---EKQSAAALC 217

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>Y473_RICPR (Q9ZD71) Hypothetical protein RP473|
          Length = 231

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 11/121 (9%)
 Frame = +1

Query: 103 RQLAGIIRQITSHEWSAPFLQPVDVVGLQLDDYHKIITKPMDFS--------TIQNKMEG 258
           + L   +  + S + S P  + +    +++ D   I+  P+ ++         + N ++ 
Sbjct: 74  KSLLNYVNSLKSSKTSIPDSEAIIHESVEVTD--NIVEVPIRYTHYLLNVNLLVYNFIQD 131

Query: 259 KDGTKYKSVREIY---SDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKVEN 429
           KD +K   + + Y    ++R I NN   YN+ +      + +++     KWL+ L K+E 
Sbjct: 132 KDYSKELRILKSYPLPQNIRNILNNLEKYNNNYLVSKSNSTVVIFPIHHKWLEQLIKIEK 191

Query: 430 E 432
           +
Sbjct: 192 K 192

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>PHOU1_THEMA (Q9X0Y7) Phosphate transport system protein phoU homolog 1|
          Length = 232

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = +1

Query: 454 NDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQR 579
           NDA  +  +  + +A+   ++DD ++E+NR++EE    ++ R
Sbjct: 30  NDAIESLETMNETLARKVLESDDMIDELNREIEEKAYQIIAR 71

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>RAD50_METJA (Q58718) DNA double-strand break repair rad50 ATPase|
          Length = 1005

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
 Frame = +1

Query: 193 DDYHKIITKPMDFSTIQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAK 372
           ++Y K +   M     +NK   +   K   +++ + D+  +FN       E  +  ++ +
Sbjct: 190 ENYEKELKNKMSQLEEKNKKLMEINDKLNKIKKEFEDIEKLFN-------EWENKKLLYE 242

Query: 373 LLLDKFEEKWLQLLPKVENEERKHVEPN-----DAPTTDTSPEDAIAKLAKDTDDELNEI 537
             ++K EE+   L  +++N+E K +E +     +A  T    +D   K  K   DE+ +I
Sbjct: 243 KFINKLEERKRAL--ELKNQELKILEYDLNTVVEARETLNRHKDEYEKY-KSLVDEIRKI 299

Query: 538 NRQLEELRN 564
             +L EL++
Sbjct: 300 ESRLRELKS 308

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>IWS1_MOUSE (Q8C1D8) IWS1-like protein|
          Length = 766

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 412 LPKVENEERKHVEPNDAPTTDTSPEDAIAKLAK-DTDDELNEINRQLEELRN 564
           LPK    + +  +P   P +D+  EDA     K D+DD   E  R+  E++N
Sbjct: 242 LPKPRVSDSESEDPQKGPASDSEAEDASRHKEKPDSDDSDGENKREDSEVQN 293

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>KTN1_HUMAN (Q86UP2) Kinectin (Kinesin receptor) (CG-1 antigen)|
          Length = 1357

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
 Frame = +1

Query: 241  QNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQL-LP 417
            +NK + K    +K+++++ S              E+ D+  + +      E + L++ L 
Sbjct: 1161 ENKWKVKVDESHKTIKQMQSSFTSSEQELERLRSENKDIENLRR------EREHLEMELE 1214

Query: 418  KVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQRCKKMT- 594
            K E E   +V      T     +D + +L K  DD  +E  RQ EEL  +  Q  + +T 
Sbjct: 1215 KAEMERSTYV------TEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKAQLNETLTK 1268

Query: 595  ----TDEKRKLGAGL 627
                 +E++K+   L
Sbjct: 1269 LRTEQNERQKVAGDL 1283

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>ITSN1_XENLA (O42287) Intersectin-1|
          Length = 1270

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 21/74 (28%), Positives = 36/74 (48%)
 Frame = +1

Query: 379 LDKFEEKWLQLLPKVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEEL 558
           L+K  EK  +L  + E E RK +E  +A   +   +  +        + LN+ NR+ E++
Sbjct: 407 LEKQLEKQRELERQREEERRKEIERREAAKRELERQRQLEWERNRRQELLNQRNREQEDI 466

Query: 559 RNMVVQRCKKMTTD 600
              VV + KK T +
Sbjct: 467 ---VVLKAKKKTLE 477

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>MYH7_MESAU (P13540) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1934

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
 Frame = +1

Query: 244  NKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKV 423
            N+M  +   + KS++ +  D ++  ++A+  ND+  +   + +   +  + +  +L   V
Sbjct: 1632 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1691

Query: 424  ENEERKH-------VEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQRC 582
            E  ER         +E ++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1692 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1747

Query: 583  KKMTTDEKRK 612
            +    +EK K
Sbjct: 1748 R--NAEEKAK 1755

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>REV1_YEAST (P12689) DNA repair protein REV1 (EC 2.7.7.-)|
          Length = 985

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 520 DELNEINRQLEELRNMVVQRCKKMTTDEKRKLGAGLC 630
           ++LNEIN+   ++   +++RCK    +  + +G G C
Sbjct: 652 EKLNEINKTTSQITLKLMRRCKDAPIEPPKYMGMGRC 688

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>MYH7_RAT (P02564) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
 Frame = +1

Query: 244  NKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKV 423
            N+M  +   + KS++ +  D ++  ++A+  ND+  +   + +   +  + +  +L   V
Sbjct: 1633 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1692

Query: 424  ENEERKH-------VEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQRC 582
            E  ER         +E ++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1693 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1748

Query: 583  KKMTTDEKRK 612
            +    +EK K
Sbjct: 1749 R--NAEEKAK 1756

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>MYH7_HUMAN (P12883) Myosin heavy chain, cardiac muscle beta isoform (MyHC-beta)|
          Length = 1935

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
 Frame = +1

Query: 244  NKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLPKV 423
            N+M  +   + KS++ +  D ++  ++A+  ND+  +   + +   +  + +  +L   V
Sbjct: 1633 NRMAAEAQKQVKSLQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVV 1692

Query: 424  ENEERKH-------VEPNDAPTTDTSPEDAIAKLAKDTDDELNEINRQLEELRNMVVQRC 582
            E  ER         +E ++      S   ++    K  D +L+++  ++EE     VQ C
Sbjct: 1693 EQTERSRKLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQLQTEVEE----AVQEC 1748

Query: 583  KKMTTDEKRK 612
            +    +EK K
Sbjct: 1749 R--NAEEKAK 1756

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>BPAEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/10|
            (Trabeculin-beta) (Bullous pemphigoid antigen) (BPA)
            (Hemidesmosomal plaque protein) (Dystonia musculorum
            protein) (Dystonin)
          Length = 5171

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 3/110 (2%)
 Frame = +1

Query: 238  IQNKMEGKDGTKYKSVREIYSDVRLIFNNAMTYNDEHHDVHIMAKLLLDKFEEKWLQLLP 417
            IQ+K+E     +YK + ++ +DV      A+      H  H      LDK E + L    
Sbjct: 3277 IQDKLEAIKA-RYKDITKLSTDVAKTLEQALQLARRLHSTHEELCTWLDKVEVELL---- 3331

Query: 418  KVENEERKHVEPNDAPTTDTSPEDAIAKLAKDTD---DELNEINRQLEEL 558
               + E + ++  +A      P++ + K AK+     D LNE++  L EL
Sbjct: 3332 ---SYETQVLKGEEASQAQMRPKE-LKKEAKNNKALLDSLNEVSSALLEL 3377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,994,064
Number of Sequences: 219361
Number of extensions: 1763998
Number of successful extensions: 6160
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 5704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6066
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5881538857
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

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full-length cDNA and EST

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