ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd26a07 |
|---|---|
| Clone Library Name | barley_pub |
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 169 bits (427), Expect = 8e-42 Identities = 80/167 (47%), Positives = 112/167 (67%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+YD++TDRSRGFAFVTM + EEA +A+++F+G+ +GGRTV+VNFPEVPRGGE Sbjct: 145 IVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAK 204 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 D +K+Y NL W + + L+ AF QPG + A+VI++R +GRSRGFGF+ Sbjct: 205 IRSTYQGFVDS-PHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFI 263 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 +F + + +AL M+ VEL+GRPLRL++A Q P S P S + Sbjct: 264 TFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPE 310 Score = 53.5 bits (127), Expect = 5e-07 Identities = 22/74 (29%), Positives = 45/74 (60%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 ++Y GNL + + + L F + ++++R T RSRGF FV+ ++++AK A++ Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174 Query: 429 MDGVELDGRPLRLS 470 DG ++ GR ++++ Sbjct: 175 FDGSQVGGRTVKVN 188
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 138 bits (348), Expect = 1e-32 Identities = 71/161 (44%), Positives = 98/161 (60%), Gaps = 3/161 (1%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF---PEVPRGGEX 188 M +IYDK+T RSRGF FVTM++ EE A Q FNG L GR +RVN PE Sbjct: 115 MVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF 174 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 D + +VY GNL WGV DAL+T F Q +V A+V+++RD+GRS Sbjct: 175 RENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRS 234 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 491 RGFGFV++ + ++ A++++DGV+L+GR +R+S A PP Sbjct: 235 RGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275 Score = 61.6 bits (148), Expect = 2e-09 Identities = 31/74 (41%), Positives = 47/74 (63%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + + AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 429 MDGVELDGRPLRLS 470 +G ELDGR LR++ Sbjct: 148 FNGYELDGRALRVN 161
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 138 bits (348), Expect = 1e-32 Identities = 71/158 (44%), Positives = 98/158 (62%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXX 197 M +IYDK+T RSRGF FVTM++ EE A Q FNG L GR +RVN P E Sbjct: 115 MVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSF 174 Query: 198 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 377 D + +VY GNL WGV DAL+T F Q +V A+V+++RD+GRSRGF Sbjct: 175 RGGSRGGGSF---DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGF 231 Query: 378 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 491 GFV++ + ++ A++++DGV+L+GR +R+S A PP Sbjct: 232 GFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269 Score = 62.4 bits (150), Expect = 1e-09 Identities = 31/74 (41%), Positives = 47/74 (63%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + + AL FE + VI+++ TGRSRGFGFV+ + ++ +AA Q Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQ 147 Query: 429 MDGVELDGRPLRLS 470 +G ELDGR LR++ Sbjct: 148 FNGYELDGRALRVN 161
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 129 bits (325), Expect = 6e-30 Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 16/173 (9%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP-------- 173 M +IYDK+T RSRGF FVTM+T EE A Q FNG + GR +RVN P Sbjct: 115 MVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSF 174 Query: 174 ---RGGEXXXXXXXXXXXXXXXXD-----DGTYKVYAGNLGWGVRADALKTAFEGQPGLV 329 RGG D + +VY GNL WGV ALK F Q +V Sbjct: 175 GGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVV 234 Query: 330 GARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 A+V+++RD+GRSRGFGFV++ + ++ A+ +++GV+LDGR +R+S A + P Sbjct: 235 DAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287 Score = 62.0 bits (149), Expect = 1e-09 Identities = 31/74 (41%), Positives = 48/74 (64%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + V + AL FE + VI+++ TGRSRGFGFV+ T ++ +AA Q Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147 Query: 429 MDGVELDGRPLRLS 470 +G E+DGR +R++ Sbjct: 148 FNGYEIDGRAIRVN 161
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 129 bits (323), Expect = 1e-29 Identities = 72/167 (43%), Positives = 97/167 (58%), Gaps = 9/167 (5%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP-------- 173 M +IYDKIT RSRGF FVTM++ E A Q FNG L GR +RVN P Sbjct: 119 MVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFS 178 Query: 174 RGGEXXXXXXXXXXXXXXXXDDGT-YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFE 350 RG G+ +VY GNL WGV AL++ F Q +V ARVI++ Sbjct: 179 RGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 238 Query: 351 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 491 RD+GRS+GFGFV++ + Q+ + A++++DG +LDGR +R+S A PP Sbjct: 239 RDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285 Score = 68.2 bits (165), Expect = 2e-11 Identities = 35/81 (43%), Positives = 51/81 (62%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + V + L FE + VI+++ TGRSRGFGFV+ ++ + +AA Q Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151 Query: 429 MDGVELDGRPLRLSLAAQNPP 491 +G ELDGRPLR++ A PP Sbjct: 152 FNGYELDGRPLRVN-AGPPPP 171
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 127 bits (319), Expect = 3e-29 Identities = 68/170 (40%), Positives = 96/170 (56%), Gaps = 16/170 (9%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP----------- 173 +IYDK++ RSRGF FVTM+T EE A Q FNG + GR +RVN P Sbjct: 119 VIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGG 178 Query: 174 RGGEXXXXXXXXXXXXXXXXD-----DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGAR 338 RGG D + +VY GNL WGV ALK F Q +V A+ Sbjct: 179 RGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAK 238 Query: 339 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 V+++RD+GRSRGFGFV++ + ++ A+ +++G++LDGR +R+S A + P Sbjct: 239 VVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288 Score = 60.1 bits (144), Expect = 5e-09 Identities = 30/74 (40%), Positives = 48/74 (64%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + V + AL FE + VI+++ +GRSRGFGFV+ T ++ +AA Q Sbjct: 89 KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148 Query: 429 MDGVELDGRPLRLS 470 +G E+DGR +R++ Sbjct: 149 FNGYEIDGRAIRVN 162
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 116 bits (290), Expect = 6e-26 Identities = 64/157 (40%), Positives = 92/157 (58%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXX 197 ++ +IY++ TDRSRGF FVTM+T EEA KAV++ NG + GR + VN PRG Sbjct: 83 IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN-KAAPRGSPERAP 141 Query: 198 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 377 + + +VY GNL W V L+ F +V ARV+ +R+TGRSRGF Sbjct: 142 RGDF---------EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGF 192 Query: 378 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 GFV+ + + A+ A+DG LDGR +R+++A + P Sbjct: 193 GFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229 Score = 65.1 bits (157), Expect = 2e-10 Identities = 34/101 (33%), Positives = 60/101 (59%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + V ++ L F+ + A VI+ R+T RSRGFGFV+ T+++A+ A++ Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115 Query: 429 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTWI 551 ++G ++DGR L ++ AA P GS + E + ++ Sbjct: 116 LNGYDMDGRQLTVNKAA---PRGSPERAPRGDFEPSCRVYV 153
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 114 bits (285), Expect = 2e-25 Identities = 61/158 (38%), Positives = 92/158 (58%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXX 197 ++ +IY++ TD+SRGF FVTM++ +EA AV+ FN L GR + VN PRG Sbjct: 178 IAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGSRPERA 236 Query: 198 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 377 + ++VY GNL W V L+ F +V ARV+++R+TGRSRGF Sbjct: 237 PRVY---------EPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGF 287 Query: 378 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPP 491 GFV+ + + A+ A+DG L+GR +R+++A + PP Sbjct: 288 GFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325 Score = 62.8 bits (151), Expect = 8e-10 Identities = 34/89 (38%), Positives = 54/89 (60%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + V + AL FE + A VI+ R+T +SRGFGFV+ ++ +A+ A++ Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210 Query: 429 MDGVELDGRPLRLSLAAQNPPAGSTPSTA 515 + +L+GR L ++ AA P GS P A Sbjct: 211 FNRYDLNGRLLTVNKAA---PRGSRPERA 236
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 113 bits (283), Expect = 4e-25 Identities = 61/157 (38%), Positives = 91/157 (57%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXX 197 ++ +IY++ TDRSRGF FVTM+T EEA KAV++++ L GR + VN PRG Sbjct: 125 IAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVN-KAAPRGSRPERA 183 Query: 198 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 377 TY++Y GN+ W + L+ F +V ARV+F+R++GRSRGF Sbjct: 184 PRTF---------QPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGF 234 Query: 378 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 GFV+ + + A+ +DG LDGR +R++ A + P Sbjct: 235 GFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERP 271 Score = 61.2 bits (147), Expect = 2e-09 Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 K++ GNL + + ++ L F+ Q G+V A VI+ R+T RSRGFGFV+ T+++A A++ Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQ-QAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVE 156 Query: 426 AMDGVELDGRPLRLSLAAQNPPAGSTPSTA 515 +L+GR L ++ AA P GS P A Sbjct: 157 LYSQYDLNGRLLTVNKAA---PRGSRPERA 183
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 111 bits (278), Expect = 2e-24 Identities = 60/153 (39%), Positives = 93/153 (60%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXX 197 ++ +IY++ TD+SRGF FVTM+T EEA KAV+M+N + GR + VN + R GE Sbjct: 164 IAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN--KAARRGERPER 221 Query: 198 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 377 + +Y++Y GN+ WG+ L+ F +V ARV+++R+TGRSRGF Sbjct: 222 PPRTF--------EQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGF 273 Query: 378 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 GFV+ + + A+ +DG LDGR +R+++A Sbjct: 274 GFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 Score = 58.9 bits (141), Expect = 1e-08 Identities = 32/79 (40%), Positives = 54/79 (68%), Gaps = 1/79 (1%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 K++ GNL + V ++ L FE Q G+V A VI+ RDT +SRGFGFV+ T+++A+ A++ Sbjct: 137 KLFVGNLPYDVDSEGLARLFE-QAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195 Query: 426 AMDGVELDGRPLRLSLAAQ 482 + +++GR L ++ AA+ Sbjct: 196 MYNRYDVNGRLLTVNKAAR 214 Score = 52.0 bits (123), Expect = 1e-06 Identities = 24/47 (51%), Positives = 32/47 (68%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 ++YD+ T RSRGF FVTMA+ E + A+ +G L GRT+RVN E Sbjct: 261 VVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAE 307
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 97.1 bits (240), Expect = 4e-20 Identities = 54/153 (35%), Positives = 84/153 (54%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXX 197 ++ ++YDK + RSR F FVTM T E+A ++ N +GGR ++VN E P G Sbjct: 112 IAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIAT 171 Query: 198 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 377 + YKVY GNL V + LK F + ++GA+V T +S GF Sbjct: 172 TQAEDSQFV----ESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGF 227 Query: 378 GFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 GFVSF + ++ +AA+QA++ L+G+ +R++ A Sbjct: 228 GFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260 Score = 62.8 bits (151), Expect = 8e-10 Identities = 29/99 (29%), Positives = 59/99 (59%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +G ++Y GN+ + D L+T E + A V++++ +GRSR FGFV+ T++DA A Sbjct: 81 EGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANA 140 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 533 ++ ++ E+ GR +++++ + P G +T Q++ + Sbjct: 141 VIEKLNDTEIGGRKIKVNI-TEKPLEGMDIATTQAEDSQ 178
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 86.3 bits (212), Expect = 7e-17 Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEV--PRGGEXXXXXXXXXXXXX 224 R++GFAF+ ++AE+A A+ N + GR++R+ F + P+GG Sbjct: 448 RAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVR 507 Query: 225 XXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQ 404 +D T + LK AF+G V AR++ +RDTG S+GFGFV F T + Sbjct: 508 GLSEDTT-------------EETLKEAFDGS---VNARIVTDRDTGASKGFGFVDFSTAE 551 Query: 405 DAKAALQAMDGVELDGRPLRLSLA 476 DAKAA +AM+ E+DG + L A Sbjct: 552 DAKAAKEAMEDGEIDGNKVTLDFA 575 Score = 62.8 bits (151), Expect = 8e-10 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 2/159 (1%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 ++G A+V + +EA KA++ GA + GR++ V+F GE Sbjct: 360 NKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFT-----GEKSQNSGNKKG------ 408 Query: 234 DDGTYKVYA-GNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +G KV NL + D+L+ FE + ++ GR++GF F+ F + +DA Sbjct: 409 PEGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDA 463 Query: 411 KAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQ 524 K A+ + + E++GR +RL + P G +AQS+ Sbjct: 464 KDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSK 502 Score = 34.7 bits (78), Expect = 0.25 Identities = 18/51 (35%), Positives = 29/51 (56%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRG 179 I+ D+ T S+GF FV +TAE+A A + + G V ++F + P+G Sbjct: 530 IVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAK-PKG 579
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 85.1 bits (209), Expect(2) = 1e-16 Identities = 39/83 (46%), Positives = 58/83 (69%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 ++Y GNL WGV AL+ F Q +V ARVI++RD+GRS+GFGFV+ + Q+ + A+ + Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317 Query: 429 MDGVELDGRPLRLSLAAQNPPAG 497 ++G +LDGR +R+S A PP G Sbjct: 318 LNGADLDGRQIRVSEAEARPPRG 340 Score = 65.5 bits (158), Expect = 1e-10 Identities = 34/81 (41%), Positives = 49/81 (60%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ GNL + V + L FE + VI+++ TGRSRGFGFV+ T + +AA Q Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159 Query: 429 MDGVELDGRPLRLSLAAQNPP 491 +G E +GRPLR++ A PP Sbjct: 160 FNGYEFEGRPLRVN-AGPPPP 179 Score = 57.8 bits (138), Expect = 3e-08 Identities = 28/47 (59%), Positives = 32/47 (68%) Frame = +3 Query: 18 MSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 M +IYDK+T RSRGF FVTM+TA E A Q FNG GR +RVN Sbjct: 127 MVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173 Score = 52.0 bits (123), Expect = 1e-06 Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 2/53 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEV--PRG 179 +IYD+ + RS+GF FVT+++++E KA+ NGA L GR +RV+ E PRG Sbjct: 288 VIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPPRG 340 Score = 20.8 bits (42), Expect(2) = 1e-16 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +2 Query: 119 QRSPAGREDSQGEFPGSAARRRKGSGIGS 205 QRS G SQ GS + GSG G+ Sbjct: 229 QRSGGGYGGSQRSSYGSGSGSGSGSGSGN 257
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 79.0 bits (193), Expect = 1e-14 Identities = 46/152 (30%), Positives = 79/152 (51%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ DK +++ +AFV + +A A+Q NG + V++N+ Sbjct: 105 IMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINW--------------- 148 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 D T+ ++ G+L V + L+ AF+ P + V+++ TG SRG+GFV Sbjct: 149 -AFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFV 207 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 SF + DA+ A+ +M G +L+GRPLR++ AA+ Sbjct: 208 SFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 239
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 78.6 bits (192), Expect = 1e-14 Identities = 49/149 (32%), Positives = 76/149 (51%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G+AF+ A+ E+A +A+ N + GRT+R+ + PRG Sbjct: 520 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPSKTLFVKGL 578 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +D T + LK +FEG V AR++ +R+TG S+GFGFV F++ +DA Sbjct: 579 SEDTT-------------EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 622 Query: 411 KAALQAMDGVELDGRPLRLSLAAQNPPAG 497 KAA +AM+ E+DG + L A G Sbjct: 623 KAAKEAMEDGEIDGNKVTLDWAKPKGEGG 651 Score = 55.1 bits (131), Expect = 2e-07 Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G A++ + +A K ++ GA + GR+V + + GE Sbjct: 427 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-----GEKGQRQERTGKNSTWS 481 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + T + NL + + L+ FE + + + G+S+G+ F+ F + +DA Sbjct: 482 GESKT--LVLSNLSYSATEETLQEVFEKATFIK----VPQNQQGKSKGYAFIEFASFEDA 535 Query: 411 KAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 509 K AL + + +E++GR +RL L +P A S PS Sbjct: 536 KEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPS 570 Score = 47.0 bits (110), Expect = 5e-05 Identities = 41/173 (23%), Positives = 70/173 (40%) Frame = +3 Query: 30 IYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXX 209 + D T +R F +V +AE+ KA+++ G + G +++ E P+G + Sbjct: 338 VVDVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGRDSKKVRAAR 393 Query: 210 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 389 + A NL + + D LK FE + G+S+G ++ Sbjct: 394 T-------------LLAKNLSFNITEDELKEVFED-----ALEIRLVSQDGKSKGIAYIE 435 Query: 390 FHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTW 548 F + DA+ L+ G E+DGR + L + Q + KNS TW Sbjct: 436 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK-------GQRQERTGKNS-TW 480
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 78.6 bits (192), Expect = 1e-14 Identities = 49/149 (32%), Positives = 76/149 (51%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G+AF+ A+ E+A +A+ N + GRT+R+ + PRG Sbjct: 523 KSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLEL-QGPRGSPNARSQPSKTLFVKGL 581 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +D T + LK +FEG V AR++ +R+TG S+GFGFV F++ +DA Sbjct: 582 SEDTT-------------EETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 625 Query: 411 KAALQAMDGVELDGRPLRLSLAAQNPPAG 497 KAA +AM+ E+DG + L A G Sbjct: 626 KAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654 Score = 55.5 bits (132), Expect = 1e-07 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 2/155 (1%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 RS+G A++ + +A K ++ GA + GR+V + + GE Sbjct: 430 RSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-----GEKGQRQERTGKNSTWS 484 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + T + NL + + L+ FE + + + G+S+G+ F+ F + +DA Sbjct: 485 GESKT--LVLSNLSYSATEETLQEVFEKATFIK----VPQNPHGKSKGYAFIEFASFEDA 538 Query: 411 KAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 509 K AL + + +E++GR +RL L +P A S PS Sbjct: 539 KEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPS 573 Score = 48.1 bits (113), Expect = 2e-05 Identities = 44/171 (25%), Positives = 73/171 (42%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D T +R F +V +AE+ KA+++ G + G +++ E P+G + Sbjct: 343 DVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGRDSKKVRAART- 397 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 + A NL + + D LK FE V R++ + GRS+G ++ F Sbjct: 398 ------------LLAKNLSFNITEDELKEVFEDA---VEIRLVSQ--DGRSKGIAYIEFK 440 Query: 396 TIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTW 548 + DA+ L+ G E+DGR + L + Q + KNS TW Sbjct: 441 SEADAEKNLEEKQGAEIDGRSVSLYYTGEK-------GQRQERTGKNS-TW 483
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 78.2 bits (191), Expect = 2e-14 Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 2/144 (1%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF--PEVPRGGEXXXXXXXXXXXXX 224 R +G+AFV TAE+A +A+ N + GR +R+ F P +G Sbjct: 496 RPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGN----------MNAR 545 Query: 225 XXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQ 404 + + ++ L + L+ +FEG + AR++ +RDTG S+GFGFV F + + Sbjct: 546 GGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPE 602 Query: 405 DAKAALQAMDGVELDGRPLRLSLA 476 DAKAA +AM+ E+DG + L A Sbjct: 603 DAKAAKEAMEDGEIDGNKVTLDFA 626 Score = 53.5 bits (127), Expect = 5e-07 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 6/169 (3%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP------EVPRGGEXXXXXXXXXX 215 S+G A++ T EA KA++ G + GR + +++ E +GG Sbjct: 407 SKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGG----------- 455 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 + + + NL + + L+ F+ + + + + GR +G+ FV F Sbjct: 456 -----GERESKTLIVNNLSYAASEETLQELFKKATSIK----MPQNNQGRPKGYAFVEFP 506 Query: 396 TIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 542 T +DAK AL + + E++GR +RL ++ + G+ + Q+ +L Sbjct: 507 TAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTL 555 Score = 44.7 bits (104), Expect = 2e-04 Identities = 33/136 (24%), Positives = 60/136 (44%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+ F +V +AE+ KA+Q+ NG L G +++ Sbjct: 320 SKRFGYVDFLSAEDMDKALQL-NGKKLMGLEIKLE------------KAKSKESLKENKK 366 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 + ++ NL + V D +K FE + R++ ++ G S+G ++ F T +A+ Sbjct: 367 ERDARTLFVKNLPYRVTEDEMKNVFENA---LEVRLVLNKE-GSSKGMAYIEFKTEAEAE 422 Query: 414 AALQAMDGVELDGRPL 461 AL+ G E+DGR + Sbjct: 423 KALEEKQGTEVDGRAM 438 Score = 31.6 bits (70), Expect = 2.1 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP----EVPRGG 182 I+ D+ T S+GF FV ++ E+A A + + G V ++F E RGG Sbjct: 581 IVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPKGEFQRGG 636
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 78.2 bits (191), Expect = 2e-14 Identities = 44/154 (28%), Positives = 72/154 (46%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 +IY++ TDRSRG+ +V A KA+Q G + GR + + G Sbjct: 199 VIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKF 258 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 + + ++ GNL + DA+ F +V R+ +T + +GFG+V Sbjct: 259 GDTPS-----EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYV 313 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 F ++DAK AL A+ G +D RP+RL ++ P Sbjct: 314 QFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRP 347 Score = 77.0 bits (188), Expect = 4e-14 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 8/94 (8%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ G L W + + LK FE G++GARVI+ER T RSRG+G+V F A+ A+Q M Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229 Query: 432 DGVELDGRPLRLSLAAQNPPA--------GSTPS 509 G E+DGRP+ ++ P G TPS Sbjct: 230 QGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPS 263
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 75.5 bits (184), Expect = 1e-13 Identities = 47/149 (31%), Positives = 75/149 (50%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G+AF+ A+ E+A +A+ N + GR +R+ + PRG Sbjct: 522 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPSKTLFVKGL 580 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +D T + LK +F+G V AR++ +R+TG S+GFGFV F++ +DA Sbjct: 581 SEDTT-------------EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 624 Query: 411 KAALQAMDGVELDGRPLRLSLAAQNPPAG 497 KAA +AM+ E+DG + L A G Sbjct: 625 KAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G A++ T +A K + G + GR++ + + GE Sbjct: 428 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT-----GEKGQNQDYRGGKNSTW 482 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + V + NL + + L+ FE + + + G+S+G+ F+ F + +DA Sbjct: 483 SGESKTLVLS-NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 537 Query: 411 KAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 509 K AL + + E++GR +RL L +P A S PS Sbjct: 538 KEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 572 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/138 (25%), Positives = 59/138 (42%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 +R F +V +AE+ KA+++ G + G +++ E P+G + Sbjct: 347 TRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGKDSKKERDART------- 395 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 + A NL + V D LK FE A + G+S+G ++ F T DA+ Sbjct: 396 ------LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAE 444 Query: 414 AALQAMDGVELDGRPLRL 467 + G E+DGR + L Sbjct: 445 KTFEEKQGTEIDGRSISL 462
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 75.5 bits (184), Expect = 1e-13 Identities = 47/149 (31%), Positives = 75/149 (50%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G+AF+ A+ E+A +A+ N + GR +R+ + PRG Sbjct: 520 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPSKTLFVKGL 578 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +D T + LK +F+G V AR++ +R+TG S+GFGFV F++ +DA Sbjct: 579 SEDTT-------------EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 622 Query: 411 KAALQAMDGVELDGRPLRLSLAAQNPPAG 497 KAA +AM+ E+DG + L A G Sbjct: 623 KAAKEAMEDGEIDGNKVTLDWAKPKGEGG 651 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G A++ T +A K + G + GR++ + + GE Sbjct: 426 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT-----GEKGQNQDYRGGKNSTW 480 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + V + NL + + L+ FE + + + G+S+G+ F+ F + +DA Sbjct: 481 SGESKTLVLS-NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 535 Query: 411 KAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 509 K AL + + E++GR +RL L +P A S PS Sbjct: 536 KEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 570 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/138 (25%), Positives = 59/138 (42%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 +R F +V +AE+ KA+++ G + G +++ E P+G + Sbjct: 345 TRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGKDSKKERDART------- 393 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 + A NL + V D LK FE A + G+S+G ++ F T DA+ Sbjct: 394 ------LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAE 442 Query: 414 AALQAMDGVELDGRPLRL 467 + G E+DGR + L Sbjct: 443 KTFEEKQGTEIDGRSISL 460
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 75.5 bits (184), Expect = 1e-13 Identities = 47/149 (31%), Positives = 75/149 (50%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G+AF+ A+ E+A +A+ N + GR +R+ + PRG Sbjct: 521 KSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL-QGPRGSPNARSQPSKTLFVKGL 579 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +D T + LK +F+G V AR++ +R+TG S+GFGFV F++ +DA Sbjct: 580 SEDTT-------------EETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 623 Query: 411 KAALQAMDGVELDGRPLRLSLAAQNPPAG 497 KAA +AM+ E+DG + L A G Sbjct: 624 KAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652 Score = 52.0 bits (123), Expect = 1e-06 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G A++ T +A K + G + GR++ + + GE Sbjct: 427 KSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYT-----GEKGQNQDYRGGKNSTW 481 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + V + NL + + L+ FE + + + G+S+G+ F+ F + +DA Sbjct: 482 SGESKTLVLS-NLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEFASFEDA 536 Query: 411 KAALQAMDGVELDGRPLRLSLAAQ--NPPAGSTPS 509 K AL + + E++GR +RL L +P A S PS Sbjct: 537 KEALNSCNKREIEGRAIRLELQGPRGSPNARSQPS 571 Score = 45.8 bits (107), Expect = 1e-04 Identities = 35/138 (25%), Positives = 59/138 (42%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 +R F +V +AE+ KA+++ G + G +++ E P+G + Sbjct: 346 TRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGKDSKKERDART------- 394 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 + A NL + V D LK FE A + G+S+G ++ F T DA+ Sbjct: 395 ------LLAKNLPYKVTQDELKEVFED-----AAEIRLVSKDGKSKGIAYIEFKTEADAE 443 Query: 414 AALQAMDGVELDGRPLRL 467 + G E+DGR + L Sbjct: 444 KTFEEKQGTEIDGRSISL 461
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 73.9 bits (180), Expect = 4e-13 Identities = 45/155 (29%), Positives = 73/155 (47%) Frame = +3 Query: 63 FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 242 + FV AA A+ NG + G+ V+VN+ P + Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRS---QN 104 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 + V+ G+L + + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+ Sbjct: 105 HFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164 Query: 423 QAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 Q M G L GR +R + A + PPA + + ++Q Sbjct: 165 QQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 53.5 bits (127), Expect = 5e-07 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 4/150 (2%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXX 194 ++ D T +S+G+ FV+ +A A+Q G LGGR +R N+ P P+ Sbjct: 137 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 196 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 VY G + G+ ++ F ++ RV +G Sbjct: 197 TKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKG 250 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLR 464 + FV F++ + A A+ +++G ++G ++ Sbjct: 251 YSFVRFNSHESAAHAIVSVNGTTIEGHVVK 280 Score = 33.5 bits (75), Expect = 0.55 Identities = 26/96 (27%), Positives = 44/96 (45%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+ +Y GNL V + F ++I DT + + FV FH + A Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAA 60 Query: 414 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 521 AAL AM+G ++ G+ ++++ A P+ T+ S Sbjct: 61 AALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSS 94
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 73.6 bits (179), Expect = 5e-13 Identities = 45/155 (29%), Positives = 73/155 (47%) Frame = +3 Query: 63 FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 242 + FV AA A+ NG + G+ V+VN+ P + Sbjct: 48 YCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDH-- 105 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 + V+ G+L + + +K AF + ARV+ + TG+S+G+GFVSF DA+ A+ Sbjct: 106 -FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164 Query: 423 QAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 Q M G L GR +R + A + PPA + + ++Q Sbjct: 165 QQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQ 199 Score = 53.1 bits (126), Expect = 7e-07 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 4/150 (2%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXX 194 ++ D T +S+G+ FV+ +A A+Q G LGGR +R N+ P P+ Sbjct: 137 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESN 196 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 VY G + G+ ++ F ++ RV +G Sbjct: 197 TKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF------PDKG 250 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLR 464 + FV F + + A A+ +++G ++G ++ Sbjct: 251 YSFVRFSSHESAAHAIVSVNGTTIEGHVVK 280 Score = 33.5 bits (75), Expect = 0.55 Identities = 26/96 (27%), Positives = 44/96 (45%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+ +Y GNL V + F ++I DT + + FV FH + A Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIM--DTAGNDPYCFVEFHEHRHAA 60 Query: 414 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 521 AAL AM+G ++ G+ ++++ A P+ T+ S Sbjct: 61 AALAAMNGRKIMGKEVKVNWA--TTPSSQKKDTSSS 94
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 73.6 bits (179), Expect = 5e-13 Identities = 38/82 (46%), Positives = 53/82 (64%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L WG +L+ AF +V A+VI +R+TGRSRGFGFV+F+ A AA+ Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95 Query: 429 MDGVELDGRPLRLSLAAQNPPA 494 MDG EL+GR +R++ A P A Sbjct: 96 MDGKELNGRHIRVNPANDRPSA 117 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN----FPEVPR 176 +I D+ T RSRGF FV A A+ +G L GR +RVN P PR Sbjct: 66 VIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPSAPR 119
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 72.4 bits (176), Expect = 1e-12 Identities = 42/167 (25%), Positives = 77/167 (46%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 +I D+ + RSRG A+V A+ + +LG P + + + Sbjct: 184 MISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLG-------VPIIVQASQAEKNRAA 236 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++Y G+L + + D L+ FE + +++ + +TGRS+G+GF+ Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 +F + AK AL+ ++G EL GRP+++ + A S S S + Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 71.2 bits (173), Expect = 2e-12 Identities = 41/167 (24%), Positives = 77/167 (46%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 +I D+ + RS+G A+V A+ + +LG P + + + Sbjct: 184 MISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLG-------VPIIVQASQAEKNRAA 236 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++Y G+L + + D L+ FE + +++ + +TGRS+G+GF+ Sbjct: 237 AMANNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 296 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 +F + AK AL+ ++G EL GRP+++ + A S S S + Sbjct: 297 TFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFLDSDE 343
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 70.9 bits (172), Expect = 3e-12 Identities = 43/168 (25%), Positives = 78/168 (46%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 II D+ + RS+G A+V + A+ + LLG P + + + Sbjct: 197 IISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLG-------VPIIVQASQAEKNRLA 249 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 + G ++Y G+L + + D L+ FE + ++ + DTGRS+G+GF+ Sbjct: 250 AMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFI 309 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQE 530 +F + A+ AL+ ++G EL GRP+R+ + G+ + QE Sbjct: 310 TFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPDGDQE 357 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/70 (28%), Positives = 33/70 (47%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 V+ L +R L+ F + R+I +R++ RS+G +V F IQ A+ + Sbjct: 168 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GL 226 Query: 432 DGVELDGRPL 461 G L G P+ Sbjct: 227 TGQRLLGVPI 236
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 70.9 bits (172), Expect = 3e-12 Identities = 44/149 (29%), Positives = 72/149 (48%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 + +G+AF+ A+ E+A +A+ N + GRT+R+ Sbjct: 521 KPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQ------------------GSNS 562 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + ++ L + LK +FEG V AR++ +R+TG S+GFGFV F++ +DA Sbjct: 563 RSQPSKTLFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDA 619 Query: 411 KAALQAMDGVELDGRPLRLSLAAQNPPAG 497 KAA +AM+ E+DG + L A G Sbjct: 620 KAAKEAMEDGEIDGNKVTLDWAKPKGEGG 648 Score = 52.0 bits (123), Expect = 1e-06 Identities = 34/145 (23%), Positives = 66/145 (45%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G A++ + +A K ++ GA + GR+V + + GE Sbjct: 428 KSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT-----GEKGQRQERTGKTSTWS 482 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + T + NL + + L+ FE + + + G+ +G+ F+ F + +DA Sbjct: 483 GESKT--LVLSNLSYSATKETLEEVFEKATFIK----VPQNPHGKPKGYAFIEFASFEDA 536 Query: 411 KAALQAMDGVELDGRPLRLSLAAQN 485 K AL + + +E++GR +RL L N Sbjct: 537 KEALNSCNKMEIEGRTIRLELQGSN 561 Score = 46.6 bits (109), Expect = 6e-05 Identities = 35/146 (23%), Positives = 62/146 (42%) Frame = +3 Query: 30 IYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXX 209 + D T +R F +V +AE+ KA+++ G + G +++ E P+G + Sbjct: 339 VVDVRTGTNRKFGYVDFESAEDLEKALEL-TGLKVFGNEIKL---EKPKGRDSKKVRAAR 394 Query: 210 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 389 + A NL + + D LK FE + G+S+G ++ Sbjct: 395 T-------------LLAKNLSFNITEDELKEVFED-----AMEIRLVSQDGKSKGIAYIE 436 Query: 390 FHTIQDAKAALQAMDGVELDGRPLRL 467 F + DA+ L+ G E+DGR + L Sbjct: 437 FKSEADAEKNLEEKQGAEIDGRSVSL 462
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 70.5 bits (171), Expect = 4e-12 Identities = 44/155 (28%), Positives = 74/155 (47%) Frame = +3 Query: 63 FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 242 + FV +AA A+ NG + G+ V+VN+ P + Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH------------- 113 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 + V+ G+L + + +K+AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ Sbjct: 114 -FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172 Query: 423 QAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 M G L GR +R + A + PPA + ++Q Sbjct: 173 VHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQ 207 Score = 54.7 bits (130), Expect = 2e-07 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 4/158 (2%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXX 194 ++ D T +S+G+ FV+ +A A+ G LGGR +R N+ P P+ + Sbjct: 145 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETN 204 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 VY G + G+ ++ F ++ RV E +G Sbjct: 205 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KG 258 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 + FV F T + A A+ +++G ++G ++ ++P Sbjct: 259 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 296
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 70.1 bits (170), Expect = 5e-12 Identities = 46/157 (29%), Positives = 74/157 (47%) Frame = +3 Query: 63 FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 242 + FV +AA A+ NG + G+ V+VN+ P + Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNH------------- 96 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 + V+ G+L + + +K+AF + ARV+ + TG+S+G+GFVSF+ DA+ A+ Sbjct: 97 -FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155 Query: 423 QAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 533 M G L GR +R + A + PPA P + Q K Sbjct: 156 VHMGGQWLGGRQIRTNWATRKPPA---PKSTQENNTK 189 Score = 54.3 bits (129), Expect = 3e-07 Identities = 35/158 (22%), Positives = 66/158 (41%), Gaps = 4/158 (2%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXX 194 ++ D T +S+G+ FV+ +A A+ G LGGR +R N+ P P+ + Sbjct: 128 VVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENN 187 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 VY G + G+ ++ F ++ RV E +G Sbjct: 188 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KG 241 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 + FV F T + A A+ +++G ++G ++ ++P Sbjct: 242 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 279
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 68.6 bits (166), Expect = 2e-11 Identities = 33/80 (41%), Positives = 51/80 (63%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 D Y+ + G L W +L+TAF LV +++I +R+TGRSRGFGFV+F + K Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 417 ALQAMDGVELDGRPLRLSLA 476 A++ M+G +LDGR + ++ A Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/50 (44%), Positives = 28/50 (56%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 E S II D+ T RSRGF FVT + A++ NG L GR++ VN Sbjct: 33 ELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 68.6 bits (166), Expect = 2e-11 Identities = 33/87 (37%), Positives = 52/87 (59%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 D Y+ + G L W AL+TAF ++ +++I +R+TGRSRGFGFV+F + K Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAG 497 A++ M+G +LDGR + ++ A G Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGSGG 91 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/46 (45%), Positives = 27/46 (58%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 S II D+ T RSRGF FVT + A++ NG L GR++ VN Sbjct: 37 SKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 68.6 bits (166), Expect = 2e-11 Identities = 33/87 (37%), Positives = 52/87 (59%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 D Y+ + G L W AL+TAF ++ +++I +R+TGRSRGFGFV+F + K Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAG 497 A++ M+G +LDGR + ++ A G Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGSGG 91 Score = 41.2 bits (95), Expect = 0.003 Identities = 22/50 (44%), Positives = 28/50 (56%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 E S II D+ T RSRGF FVT + A++ NG L GR++ VN Sbjct: 33 EVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVN 82
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 67.8 bits (164), Expect = 3e-11 Identities = 33/87 (37%), Positives = 51/87 (58%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 D Y+ + G L W + L+ AF ++ ++VI +R+TGRSRGFGFV+F + Q Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAG 497 A++ M+G ELDGR + ++ A G Sbjct: 65 AIENMNGKELDGRNITVNQAQSRGGGG 91 Score = 44.3 bits (103), Expect = 3e-04 Identities = 22/54 (40%), Positives = 31/54 (57%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 S +I D+ T RSRGF FVT ++ + A++ NG L GR + VN + GG Sbjct: 37 SKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGG 90
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 66.6 bits (161), Expect = 6e-11 Identities = 32/87 (36%), Positives = 51/87 (58%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 D Y+ + G L W ++L+ AF ++ ++VI +R+TGRSRGFGFV+F + Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAG 497 A++ M+G ELDGR + ++ A G Sbjct: 65 AIENMNGKELDGRNITVNQAQSRGGGG 91 Score = 43.5 bits (101), Expect = 5e-04 Identities = 22/54 (40%), Positives = 30/54 (55%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 S +I D+ T RSRGF FVT ++ A++ NG L GR + VN + GG Sbjct: 37 SKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGG 90
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 66.6 bits (161), Expect = 6e-11 Identities = 46/158 (29%), Positives = 70/158 (44%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 +I D + RS+G+ +V T E A AV + GR V ++ PR Sbjct: 294 VIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSN-PRPANPQPYAQQ 352 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 + + V+ GNL + D L TAF G + R+ + +GR +GFG+V Sbjct: 353 RAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYV 412 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 +F I AK ++ M+G + GRP RL + GS Sbjct: 413 TFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPRTGGGS 449 Score = 66.2 bits (160), Expect = 8e-11 Identities = 40/93 (43%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T V+ G L W V L FE +VGARVI + +GRS+G+G+V F T + AKAA+ Sbjct: 262 TCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321 Query: 423 QAMDGVELDGRPLRLSLAAQNP-PAGSTPSTAQ 518 A E+DGR + L L+ NP PA P Q Sbjct: 322 AANGTKEIDGRMVNLDLS--NPRPANPQPYAQQ 352
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 65.9 bits (159), Expect = 1e-10 Identities = 30/84 (35%), Positives = 50/84 (59%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y+ + G L W ++L+ AF + +++I +R+TGRSRGFGFV+F + + A++ Sbjct: 6 YRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIE 65 Query: 426 AMDGVELDGRPLRLSLAAQNPPAG 497 M+G ELDGR + ++ A G Sbjct: 66 GMNGQELDGRNITVNEAQSRGSGG 89 Score = 42.4 bits (98), Expect = 0.001 Identities = 32/110 (29%), Positives = 43/110 (39%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEX 188 + T S II D+ T RSRGF FVT + A++ NG L GR + VN + G Sbjct: 31 DITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGGG 90 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGAR 338 G + G G+G R + + G G G R Sbjct: 91 GGRREGGGGGYGGGGGYGGRREGGGGGGYGGRREGGGGGYGGGGGGYGGR 140
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 65.9 bits (159), Expect = 1e-10 Identities = 50/156 (32%), Positives = 72/156 (46%), Gaps = 2/156 (1%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRGGEX 188 T+S + T RSRGF FV EEA KAV NG + GR + V + + R GE Sbjct: 217 TLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGEL 276 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 +Y NL G+ D L+ F + A+V+ E G S Sbjct: 277 KRKFEQIKQERINRYQG--VNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTE--GGHS 332 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 +GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 64.3 bits (155), Expect = 3e-10 Identities = 45/141 (31%), Positives = 66/141 (46%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 SRG+ FV T E A +A+Q NG LL R V V + R E Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + L+ F + +V+ + DTGRSRGFGFV++ ++A+ Sbjct: 192 -----NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQ 245 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ M+G E++GR + + A Sbjct: 246 KAVSEMNGKEVNGRMIYVGRA 266 Score = 51.2 bits (121), Expect = 3e-06 Identities = 37/140 (26%), Positives = 61/140 (43%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D T RS G+A++ +A +A+ N ++ GR +R+ + + G Sbjct: 45 DIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPG------------ 92 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G V+ NL + AL F ++ +V+ D SRG+GFV F Sbjct: 93 ----LRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A A+Q M+G+ L+ R Sbjct: 147 TQEAANRAIQTMNGMLLNDR 166
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 64.3 bits (155), Expect = 3e-10 Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 2/100 (2%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K+Y G L G +LK AF G+ ARV+ + TGRSRG+GFV+F + A +A+ A Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91 Query: 429 MDGVELDGRPLRLSLAAQNP--PAGSTPSTAQSQQEKNSL 542 M+G EL+G + +++A P P S ++++++N + Sbjct: 92 MNGQELNGFNISVNVAKDWPSLPLSLDESIEEAEKKENKM 131 Score = 38.5 bits (88), Expect = 0.017 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN----FPEVP 173 T + ++ +K+T RSRG+ FV + + A A+ NG L G + VN +P +P Sbjct: 58 TEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWPSLP 114
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 63.9 bits (154), Expect = 4e-10 Identities = 42/135 (31%), Positives = 64/135 (47%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+G+ FV A E A KA++ NG LL + V V P + R Sbjct: 162 QSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVG-PFLRRQERDSTANKTKFT----- 215 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 VY NL D LK AF G+ G + + V+ + G+S+GFGFV+F DA Sbjct: 216 ------NVYVKNLAESTTDDDLKNAF-GEYGKITSAVVMKDGEGKSKGFGFVNFENADDA 268 Query: 411 KAALQAMDGVELDGR 455 A+++++G + D + Sbjct: 269 ARAVESLNGHKFDDK 283 Score = 53.5 bits (127), Expect = 5e-07 Identities = 37/152 (24%), Positives = 65/152 (42%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXX 200 S ++ +S+GF FV A++AA+AV+ NG + V + E Sbjct: 243 SAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRV 302 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 + +Y NL + + LK F G V + + G S+G G Sbjct: 303 RYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPF-GTVTSSKVMRDPNGTSKGSG 361 Query: 381 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 FV+F T ++A A+ + G ++ +PL +++A Sbjct: 362 FVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393 Score = 52.8 bits (125), Expect = 9e-07 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 4/144 (2%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 203 D +T RS G+ +V ++AA+A+Q N L G+ +RV + P V R G Sbjct: 70 DLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAG----- 124 Query: 204 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 383 ++ NL + AL F +V +V + +G+S+G+GF Sbjct: 125 ---------------NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGF 168 Query: 384 VSFHTIQDAKAALQAMDGVELDGR 455 V + + A+ A++ ++G+ L+ + Sbjct: 169 VQYANEESAQKAIEKLNGMLLNDK 192 Score = 52.8 bits (125), Expect = 9e-07 Identities = 30/108 (27%), Positives = 49/108 (45%) Frame = +3 Query: 165 EVPRGGEXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVI 344 + P G G +Y G+L + V L AF +V RV Sbjct: 9 QTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVC 68 Query: 345 FERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNP 488 + T RS G+G+V+F QDA A+Q ++ + L G+P+R+ + ++P Sbjct: 69 RDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRDP 116
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 63.9 bits (154), Expect = 4e-10 Identities = 33/84 (39%), Positives = 51/84 (60%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+G K++ G L + D L+ AF + V+ +R+T RSRGFGFV+F + DAK Sbjct: 3 DEG--KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60 Query: 414 AALQAMDGVELDGRPLRLSLAAQN 485 A+ AM+G +DGR +R+ A ++ Sbjct: 61 DAMMAMNGKSVDGRQIRVDQAGKS 84 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF FVT ++A A+ NG + GR +RV+ Sbjct: 36 VVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVD 79
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 63.2 bits (152), Expect = 6e-10 Identities = 33/84 (39%), Positives = 50/84 (59%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+G K++ G L + AL+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 414 AALQAMDGVELDGRPLRLSLAAQN 485 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF FVT ++A A+ NG + GR +RV+ Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 63.2 bits (152), Expect = 6e-10 Identities = 33/84 (39%), Positives = 50/84 (59%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+G K++ G L + AL+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 414 AALQAMDGVELDGRPLRLSLAAQN 485 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF FVT ++A A+ NG + GR +RV+ Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 63.2 bits (152), Expect = 6e-10 Identities = 33/84 (39%), Positives = 50/84 (59%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+G K++ G L + AL+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 414 AALQAMDGVELDGRPLRLSLAAQN 485 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF FVT ++A A+ NG + GR +RV+ Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 62.8 bits (151), Expect = 8e-10 Identities = 49/156 (31%), Positives = 71/156 (45%), Gaps = 2/156 (1%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRGGEX 188 T+S + + RSRGF FV EEA KAV NG + GR V V + + R GE Sbjct: 217 TLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGEL 276 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 +Y NL G+ D L+ F + +V+ E G S Sbjct: 277 KRKFEQIKQERINRYQG--VNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTE--GGHS 332 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 +GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 333 KGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 61.2 bits (147), Expect = 2e-09 Identities = 43/134 (32%), Positives = 63/134 (47%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 SRG+ FV T E A +A+Q NG LL R V V + R E Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + LK F + +V+ + ++GRSRGFGFV++ ++A+ Sbjct: 192 -----NVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQ 245 Query: 414 AALQAMDGVELDGR 455 A+ M+G E++GR Sbjct: 246 KAVTEMNGKEVNGR 259
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 62.4 bits (150), Expect = 1e-09 Identities = 44/141 (31%), Positives = 66/141 (46%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 SRG+ FV T E A +A+Q NG LL R V V + R E Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + L+ F + +V+ + D+GRSRGFGFV++ ++A+ Sbjct: 192 -----NVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQ 245 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ M+G E++GR + + A Sbjct: 246 KAVSEMNGKEVNGRMIYVGRA 266 Score = 60.8 bits (146), Expect = 3e-09 Identities = 46/154 (29%), Positives = 69/154 (44%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T+S + + RSRGF FV EEA KAV NG + GR + V + + Sbjct: 217 TLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSEL 276 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL G+ D L+ F + A+V+ E G S+G Sbjct: 277 KRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTE--GGHSKG 334 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 FGFV F + ++A A+ M+G + +PL ++LA Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368 Score = 48.9 bits (115), Expect = 1e-05 Identities = 36/140 (25%), Positives = 60/140 (42%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D T RS +A++ +A +A+ N ++ GR +R+ + + G Sbjct: 45 DIATRRSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRDPG------------ 92 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G V+ NL + AL F ++ +V+ D SRG+GFV F Sbjct: 93 ----LRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVC--DEHGSRGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A A+Q M+G+ L+ R Sbjct: 147 THEAANRAIQTMNGMLLNDR 166
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 62.0 bits (149), Expect = 1e-09 Identities = 46/164 (28%), Positives = 76/164 (46%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+ FV T E A +A++ NG LL GR V V + + E Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFP----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ Sbjct: 192 -----NVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245 Query: 414 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLT 545 A+ M+G EL+G+ + + A + + Q +++ +T Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRIT 289 Score = 61.2 bits (147), Expect = 2e-09 Identities = 42/142 (29%), Positives = 67/142 (47%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+GF FV+ E+A KAV NG L G+ + V + + Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRI 288 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +Y NL G+ + L+ AF + A+V+ E GRS+GFGFV F + ++A Sbjct: 289 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 A+ M+G + +PL ++LA Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368 Score = 45.4 bits (106), Expect = 1e-04 Identities = 34/143 (23%), Positives = 60/143 (41%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I D IT S +A+V ++A A+ N ++ G+ VR+ + + Sbjct: 42 ICRDLITSGSSNYAYVNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQ------------- 88 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++ NL + AL ++ V+ D S+G+GFV Sbjct: 89 ---RDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVC--DENGSKGYGFV 143 Query: 387 SFHTIQDAKAALQAMDGVELDGR 455 F T + A+ A++ M+G+ L+GR Sbjct: 144 HFETHEAAERAIKKMNGMLLNGR 166
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 62.0 bits (149), Expect = 1e-09 Identities = 32/84 (38%), Positives = 50/84 (59%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+G K++ G L + +L+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 414 AALQAMDGVELDGRPLRLSLAAQN 485 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF FVT ++A A+ NG + GR +RV+ Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 62.0 bits (149), Expect = 1e-09 Identities = 32/84 (38%), Positives = 50/84 (59%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+G K++ G L + +L+ F + V+ +R+T RSRGFGFV+F I DAK Sbjct: 4 DEG--KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61 Query: 414 AALQAMDGVELDGRPLRLSLAAQN 485 A+ AM+G +DGR +R+ A ++ Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGKS 85 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/44 (40%), Positives = 27/44 (61%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF FVT ++A A+ NG + GR +RV+ Sbjct: 37 VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 80
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 61.6 bits (148), Expect = 2e-09 Identities = 30/84 (35%), Positives = 47/84 (55%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y+ + G L W L+ F ++ +++I +R+TGRSRGFGFV+F + K A+ Sbjct: 6 YRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAID 65 Query: 426 AMDGVELDGRPLRLSLAAQNPPAG 497 M+G ELDGR + ++ A G Sbjct: 66 EMNGKELDGRTITVNEAQSRGGGG 89 Score = 44.3 bits (103), Expect = 3e-04 Identities = 25/58 (43%), Positives = 30/58 (51%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 E S II D+ T RSRGF FVT + A+ NG L GRT+ VN + GG Sbjct: 31 EVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGG 88
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 61.2 bits (147), Expect = 2e-09 Identities = 44/136 (32%), Positives = 63/136 (46%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+ FV T E A +A+ NG LL R V V + + E Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + + LK F GQ G + + D G+SRGFGFVSF +DA+ Sbjct: 192 -----NVYIKNFGEDMDDERLKEWF-GQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQ 245 Query: 414 AALQAMDGVELDGRPL 461 A+ M+G +L+G+ + Sbjct: 246 KAVDDMNGKDLNGKAI 261 Score = 59.3 bits (142), Expect = 9e-09 Identities = 44/158 (27%), Positives = 72/158 (45%) Frame = +3 Query: 3 RHEATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 ++ A +S + +SRGF FV+ E+A KAV NG L G+ + V + Sbjct: 213 QYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVER 272 Query: 183 EXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTG 362 + +Y NL G+ + L+ F + A+V+ E G Sbjct: 273 QTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--G 330 Query: 363 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 RS+GFGFV F + ++A A+ M+G + +PL ++LA Sbjct: 331 RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368 Score = 48.9 bits (115), Expect = 1e-05 Identities = 35/140 (25%), Positives = 61/140 (43%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N ++ G+ VR+ + + Sbjct: 45 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G ++ NL + AL F ++ +V+ D S+G+GFV F Sbjct: 89 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A+ A+ M+G+ L+ R Sbjct: 147 TQEAAERAIDKMNGMLLNDR 166
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 61.2 bits (147), Expect = 2e-09 Identities = 28/84 (33%), Positives = 49/84 (58%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y+ + G L W + L+ F ++ +++I +R++GRSRGFGFV+F + + A++ Sbjct: 6 YRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIE 65 Query: 426 AMDGVELDGRPLRLSLAAQNPPAG 497 M+G ELDGR + ++ A G Sbjct: 66 EMNGKELDGRVITVNEAQSRGSGG 89 Score = 39.3 bits (90), Expect = 0.010 Identities = 20/46 (43%), Positives = 26/46 (56%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 S II D+ + RSRGF FVT + A++ NG L GR + VN Sbjct: 35 SKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.8 bits (146), Expect = 3e-09 Identities = 43/141 (30%), Positives = 67/141 (47%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+ FV T E A +A++ NG LL R V V + + E Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGARAKEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ Sbjct: 192 -----NVYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ M+G EL+G+ + + A Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266 Score = 58.2 bits (139), Expect = 2e-08 Identities = 41/142 (28%), Positives = 66/142 (46%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+GF FV+ E+A KAV NG L G+ + V + + Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +Y NL G+ + L+ F + A+V+ E GRS+GFGFV F + ++A Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 A+ M+G + +PL ++LA Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368 Score = 49.7 bits (117), Expect = 7e-06 Identities = 35/140 (25%), Positives = 62/140 (44%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N ++ G+ VR+ + + Sbjct: 45 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G ++ NL + AL F ++ +V+ D S+G+GFV F Sbjct: 89 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A+ A++ M+G+ L+ R Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.5 bits (145), Expect = 4e-09 Identities = 43/141 (30%), Positives = 67/141 (47%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+ FV T E A +A++ NG LL R V V + + E Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ Sbjct: 192 -----NVYIKNFGEDMDDERLKELF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ M+G EL+G+ + + A Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266 Score = 58.2 bits (139), Expect = 2e-08 Identities = 41/142 (28%), Positives = 66/142 (46%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+GF FV+ E+A KAV NG L G+ + V + + Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +Y NL G+ + L+ F + A+V+ E GRS+GFGFV F + ++A Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 A+ M+G + +PL ++LA Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368 Score = 49.7 bits (117), Expect = 7e-06 Identities = 35/140 (25%), Positives = 62/140 (44%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N ++ G+ VR+ + + Sbjct: 45 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G ++ NL + AL F ++ +V+ D S+G+GFV F Sbjct: 89 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A+ A++ M+G+ L+ R Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.5 bits (145), Expect = 4e-09 Identities = 43/141 (30%), Positives = 67/141 (47%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+ FV T E A +A++ NG LL R V V + + E Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ Sbjct: 192 -----NVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ M+G EL+G+ + + A Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266 Score = 58.2 bits (139), Expect = 2e-08 Identities = 41/142 (28%), Positives = 66/142 (46%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+GF FV+ E+A KAV NG L G+ + V + + Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +Y NL G+ + L+ F + A+V+ E GRS+GFGFV F + ++A Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 A+ M+G + +PL ++LA Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368 Score = 49.7 bits (117), Expect = 7e-06 Identities = 35/140 (25%), Positives = 62/140 (44%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N ++ G+ VR+ + + Sbjct: 45 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G ++ NL + AL F ++ +V+ D S+G+GFV F Sbjct: 89 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A+ A++ M+G+ L+ R Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 60.5 bits (145), Expect = 4e-09 Identities = 43/141 (30%), Positives = 67/141 (47%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+ FV T E A +A++ NG LL R V V + + E Sbjct: 137 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + + LK F G+ G + + ++G+S+GFGFVSF +DA+ Sbjct: 192 -----NVYIKNFGEDMDDERLKDLF-GKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ M+G EL+G+ + + A Sbjct: 246 KAVDEMNGKELNGKQIYVGRA 266 Score = 58.2 bits (139), Expect = 2e-08 Identities = 41/142 (28%), Positives = 66/142 (46%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+GF FV+ E+A KAV NG L G+ + V + + Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRI 288 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +Y NL G+ + L+ F + A+V+ E GRS+GFGFV F + ++A Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 A+ M+G + +PL ++LA Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368 Score = 49.7 bits (117), Expect = 7e-06 Identities = 35/140 (25%), Positives = 62/140 (44%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N ++ G+ VR+ + + Sbjct: 45 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ---------------- 88 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G ++ NL + AL F ++ +V+ D S+G+GFV F Sbjct: 89 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A+ A++ M+G+ L+ R Sbjct: 147 TQEAAERAIEKMNGMLLNDR 166
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 60.1 bits (144), Expect = 5e-09 Identities = 43/134 (32%), Positives = 62/134 (46%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+AFV T E A KA++ NG LL R V V + + E Sbjct: 137 SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G V ++LK F Q G + + G+S+GFGFVS+ +DA Sbjct: 192 -----NVYIKNFGEEVDDESLKELFS-QFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDAN 245 Query: 414 AALQAMDGVELDGR 455 A++ M+G E+ G+ Sbjct: 246 KAVEEMNGKEISGK 259 Score = 56.6 bits (135), Expect = 6e-08 Identities = 41/154 (26%), Positives = 70/154 (45%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T+S + +S+GF FV+ E+A KAV+ NG + G+ + V + + Sbjct: 217 TLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAEL 276 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL + + L+ F + A+V+ E GRS+G Sbjct: 277 KRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKG 334 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 FGFV F + ++A A+ M+G + +PL ++LA Sbjct: 335 FGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368 Score = 46.6 bits (109), Expect = 6e-05 Identities = 34/140 (24%), Positives = 60/140 (42%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N ++ G+ +R+ + + Sbjct: 45 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQ---------------- 88 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G V+ NL + AL F ++ +V+ D S+G+ FV F Sbjct: 89 RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYAFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A A++ M+G+ L+ R Sbjct: 147 TQEAADKAIEKMNGMLLNDR 166
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 60.1 bits (144), Expect = 5e-09 Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 3/152 (1%) Frame = +3 Query: 30 IYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLG-GRTVRVNFPEVPRGGEXXXXXXX 206 + K +S+GF FV T E A AVQ NG +G G+++ V + E Sbjct: 214 VMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKR 271 Query: 207 XXXXXXXXXDDGTYKV--YAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 + + V Y NL + D L+ AF + A+V+ + + GRS+GFG Sbjct: 272 KFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFG 330 Query: 381 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 FV F+ +A A+ ++G + +PL ++LA Sbjct: 331 FVCFNAASEATCAVTELNGRVVGSKPLYVALA 362 Score = 57.4 bits (137), Expect = 4e-08 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN--FPEVPRGGEXXXXXXXXXXXXXX 227 S+G+ FV T E A ++ NG LL G+ V V P R E Sbjct: 129 SKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFT----- 183 Query: 228 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 407 VY N + LK FE + +V+ + D G+S+GFGFV+F T + Sbjct: 184 -------NVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEA 235 Query: 408 AKAALQAMDGVEL-DGRPLRLSLA 476 A+AA+QA++G ++ +G+ L ++ A Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARA 259 Score = 45.8 bits (107), Expect = 1e-04 Identities = 32/140 (22%), Positives = 61/140 (43%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N L+ + +R+ + + Sbjct: 36 DVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQ---------------- 79 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G V+ NL + A+ F ++ +V + + G S+G+GFV F Sbjct: 80 RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATD-EKGNSKGYGFVHFE 138 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A ++ ++G+ L+G+ Sbjct: 139 TEEAANTSIDKVNGMLLNGK 158
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 59.7 bits (143), Expect = 7e-09 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 1/161 (0%) Frame = +3 Query: 33 YDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP-EVPRGGEXXXXXXXX 209 +D IT + +GFAFV E A A++ NGAL+GGR ++V P +P+ + Sbjct: 163 WDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEE 222 Query: 210 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 389 ++Y ++ + + +K+ FE ++ ++ +G+GF+ Sbjct: 223 AKSFN--------RIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIE 274 Query: 390 FHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPST 512 + Q A+ +M+ +L G+ LR+ + P A + P+T Sbjct: 275 YANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNALACPTT 315 Score = 43.5 bits (101), Expect = 5e-04 Identities = 21/92 (22%), Positives = 46/92 (50%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +VY G++ + ++ D ++ AF + + ++ T + +GF FV + + A+ AL+ Sbjct: 131 RVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQ 190 Query: 429 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 M+G + GR +++ + P A Q + Sbjct: 191 MNGALMGGRNIKVGRPSNMPQAQQVIDEVQEE 222
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 59.3 bits (142), Expect = 9e-09 Identities = 41/136 (30%), Positives = 63/136 (46%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S+G+ FV T E A +A+ NG LL R V V + + E Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFT----- 191 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY N G + + LK F G+ G + + D G+S+GFGFVSF +DA+ Sbjct: 192 -----NVYIKNFGDDMNDERLKEMF-GKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQ 245 Query: 414 AALQAMDGVELDGRPL 461 A+ M+G +++G+ + Sbjct: 246 KAVDEMNGKDMNGKSM 261 Score = 55.5 bits (132), Expect = 1e-07 Identities = 40/142 (28%), Positives = 67/142 (47%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+GF FV+ E+A KAV NG + G+++ V + + Sbjct: 229 KSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRI 288 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +Y NL G+ + L+ F + A+V+ E GRS+GFGFV F + ++A Sbjct: 289 TRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEA 346 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 A+ M+G + +PL ++LA Sbjct: 347 TKAVTEMNGRIVATKPLYVALA 368 Score = 50.1 bits (118), Expect = 6e-06 Identities = 36/140 (25%), Positives = 61/140 (43%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT RS G+A+V +A +A+ N ++ GR VR+ + + Sbjct: 45 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQ---------------- 88 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G ++ NL + AL F ++ +V+ D S+G+GFV F Sbjct: 89 RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC--DENGSKGYGFVHFE 146 Query: 396 TIQDAKAALQAMDGVELDGR 455 T + A+ A+ M+G+ L+ R Sbjct: 147 TQEAAERAIDKMNGMLLNDR 166
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 58.2 bits (139), Expect = 2e-08 Identities = 33/88 (37%), Positives = 45/88 (51%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +G + NL + D L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 11 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 70 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGS 500 A+ AMDG LDGR LR+ +A P S Sbjct: 71 AMDAMDGAVLDGRELRVQMARYGRPPDS 98 Score = 37.4 bits (85), Expect = 0.038 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D+ T SRGFAFV +A A+ +GA+L GR +RV R Sbjct: 48 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 94
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 58.2 bits (139), Expect = 2e-08 Identities = 33/88 (37%), Positives = 45/88 (51%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +G + NL + D L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGS 500 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97 Score = 37.4 bits (85), Expect = 0.038 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D+ T SRGFAFV +A A+ +GA+L GR +RV R Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 58.2 bits (139), Expect = 2e-08 Identities = 33/88 (37%), Positives = 45/88 (51%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +G + NL + D L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGS 500 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97 Score = 37.4 bits (85), Expect = 0.038 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D+ T SRGFAFV +A A+ +GA+L GR +RV R Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 58.2 bits (139), Expect = 2e-08 Identities = 33/88 (37%), Positives = 45/88 (51%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +G + NL + D L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGS 500 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97 Score = 37.4 bits (85), Expect = 0.038 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D+ T SRGFAFV +A A+ +GA+L GR +RV R Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 58.2 bits (139), Expect = 2e-08 Identities = 33/88 (37%), Positives = 45/88 (51%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +G + NL + D L+ FE + + +R T SRGF FV FH +DA+ Sbjct: 10 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAED 69 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGS 500 A+ AMDG LDGR LR+ +A P S Sbjct: 70 AMDAMDGAVLDGRELRVQMARYGRPPDS 97 Score = 37.4 bits (85), Expect = 0.038 Identities = 19/47 (40%), Positives = 25/47 (53%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D+ T SRGFAFV +A A+ +GA+L GR +RV R Sbjct: 47 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 93
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 57.8 bits (138), Expect = 3e-08 Identities = 41/154 (26%), Positives = 65/154 (42%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D++ + GF F ++ A Q+ N L G+ +RVN RG Sbjct: 45 DRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNTLIGA----- 99 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 ++ GNL V L F LV A + + GRS+G+GFVS+ Sbjct: 100 -----------NLFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYD 148 Query: 396 TIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 497 + + A AA++AM+ L +P+ +S A + G Sbjct: 149 SFETADAAIEAMNNQFLMNKPITVSYAFKREGKG 182 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/78 (30%), Positives = 38/78 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y GNL V L +V + +R GFGF F QD + A Q + Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72 Query: 432 DGVELDGRPLRLSLAAQN 485 + V+L G+P+R++ A+Q+ Sbjct: 73 NQVKLFGKPIRVNRASQD 90
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 57.4 bits (137), Expect = 4e-08 Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 1/161 (0%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D++T + +G+ FV + E+A A+++ N L G+ +RVN Sbjct: 47 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----------------KAS 90 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGA-RVIFERDTGRSRGFGFVSF 392 D G ++ GNL + L F ++ +++ + DTG S+G+ F++F Sbjct: 91 AHNKNLDVGA-NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 149 Query: 393 HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 515 + + AA++AM+G L RP+ +S A + G +A Sbjct: 150 ASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSA 190 Score = 43.9 bits (102), Expect = 4e-04 Identities = 25/76 (32%), Positives = 43/76 (56%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 VY G L V L F +V + +R TG+ +G+GFV F + +DA A++ M Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 74 Query: 432 DGVELDGRPLRLSLAA 479 + ++L G+P+R++ A+ Sbjct: 75 NMIKLYGKPIRVNKAS 90 Score = 32.3 bits (72), Expect = 1.2 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 I+ D T S+G+AF+ A+ + + A++ NG L R + V++ Sbjct: 132 IMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 176
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = +3 Query: 294 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 133 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192 Query: 474 AAQNPPAGSTP 506 + TP Sbjct: 193 SITKRAHTPTP 203 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/45 (42%), Positives = 31/45 (68%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 ++YD+ T RSRGFAFV +++ +A++ NG L GR +RV++ Sbjct: 148 VVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 192
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 57.0 bits (136), Expect = 5e-08 Identities = 28/71 (39%), Positives = 41/71 (57%) Frame = +3 Query: 294 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 L+ F L G V++++ TGRSRGF FV F I D+K A++ +G+ELDGR +R+ Sbjct: 135 LREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194 Query: 474 AAQNPPAGSTP 506 + TP Sbjct: 195 SITKRAHTPTP 205 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/45 (42%), Positives = 31/45 (68%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 ++YD+ T RSRGFAFV +++ +A++ NG L GR +RV++ Sbjct: 150 VVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDY 194
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 57.0 bits (136), Expect = 5e-08 Identities = 33/103 (32%), Positives = 53/103 (51%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D ++++ GNLG V ++L AF P LV +V+ +R+ G++RGFGFVSF Sbjct: 26 DPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFL 84 Query: 414 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 542 A + +G + RP++LS A + + +NSL Sbjct: 85 KAWREKNGKYIGSRPVKLSRATSDVKPNEVNEKTIDSKIRNSL 127
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/166 (23%), Positives = 73/166 (43%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV ++A KA+ NG L +T++V++ P Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA--- 125 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + L+ F ++ +R++ ++ TG SRG GF+ Sbjct: 126 --------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 F +A+ A++ ++G + G +++ N P+ T SQ Sbjct: 172 RFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/63 (26%), Positives = 39/63 (61%) Frame = +3 Query: 288 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 467 + LK+ F + +++ ++ TG+S G+GFV++ +DA+ A+ ++G+ L + +++ Sbjct: 53 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 112 Query: 468 SLA 476 S A Sbjct: 113 SYA 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/166 (23%), Positives = 73/166 (43%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV ++A KA+ NG L +T++V++ P Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA--- 125 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + L+ F ++ +R++ ++ TG SRG GF+ Sbjct: 126 --------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 F +A+ A++ ++G + G +++ N P+ T SQ Sbjct: 172 RFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/81 (23%), Positives = 44/81 (54%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 +D + L + + LK+ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G+ L + +++S A Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/166 (23%), Positives = 73/166 (43%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV ++A KA+ NG L +T++V++ P Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA--- 125 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + L+ F ++ +R++ ++ TG SRG GF+ Sbjct: 126 --------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 F +A+ A++ ++G + G +++ N P+ T SQ Sbjct: 172 RFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 307 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/81 (23%), Positives = 44/81 (54%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 +D + L + + LK+ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G+ L + +++S A Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 302 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 350
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 56.2 bits (134), Expect = 8e-08 Identities = 39/166 (23%), Positives = 73/166 (43%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV ++A KA+ NG L +T++V++ P Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA--- 125 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + L+ F ++ +R++ ++ TG SRG GF+ Sbjct: 126 --------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 171 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 F +A+ A++ ++G + G +++ N P+ T SQ Sbjct: 172 RFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQ 217 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 308 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352 Score = 39.7 bits (91), Expect = 0.008 Identities = 19/81 (23%), Positives = 44/81 (54%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 +D + L + + LK+ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G+ L + +++S A Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/49 (30%), Positives = 29/49 (59%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 + +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 303 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 351
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 55.8 bits (133), Expect = 1e-07 Identities = 28/79 (35%), Positives = 46/79 (58%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + AL+ F + V+ +R+T RSRGFGF++F + A A++A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66 Query: 429 MDGVELDGRPLRLSLAAQN 485 M+G LDGR +R+ A ++ Sbjct: 67 MNGESLDGRQIRVDHAGKS 85 Score = 43.5 bits (101), Expect = 5e-04 Identities = 19/44 (43%), Positives = 28/44 (63%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF F+T E A+ A++ NG L GR +RV+ Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVD 80
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 55.5 bits (132), Expect = 1e-07 Identities = 42/152 (27%), Positives = 63/152 (41%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXX 200 S ++ + SR F FV E AA AV+ NG LG + V + E Sbjct: 257 SAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRR 316 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 +Y NL V + LK F + ++V+ G SRGFG Sbjct: 317 KFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFG 375 Query: 381 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 FV++ ++A AL M+G + +PL ++LA Sbjct: 376 FVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407 Score = 55.1 bits (131), Expect = 2e-07 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%) Frame = +3 Query: 42 ITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXX 221 +T RS+G+ FV E A A+ NG L+ + V V Sbjct: 171 VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGH---------------FIRRQ 215 Query: 222 XXXXDDGT-----YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 D+ T VY NL + D L+ F G+ G++ + V+ +G SR FGFV Sbjct: 216 ERARDENTPTPRFTNVYVKNLPKEIGEDELRKTF-GKFGVISSAVVMRDQSGNSRCFGFV 274 Query: 387 SFHTIQDAKAALQAMDGVEL 446 +F + A +A++ M+G+ L Sbjct: 275 NFECTEAAASAVEKMNGISL 294 Score = 42.0 bits (97), Expect = 0.002 Identities = 30/135 (22%), Positives = 58/135 (42%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 RS G+A++ + +A +A++ N L R +R+ Sbjct: 87 RSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLS------------- 133 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 G ++ NL + AL F ++ +V + TGRS+G+GFV F + A Sbjct: 134 ---GKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESA 189 Query: 411 KAALQAMDGVELDGR 455 +AA+ ++G+ ++ + Sbjct: 190 QAAIDKLNGMLMNDK 204
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 55.5 bits (132), Expect = 1e-07 Identities = 41/152 (26%), Positives = 64/152 (42%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXX 200 S ++ + SR F FV + E AA AV+ NG LG + V + E Sbjct: 253 SAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRR 312 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 +Y NL V + LK F + +V+ G SRGFG Sbjct: 313 KFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFG 371 Query: 381 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 FV++ ++A A++ M+G + +PL ++LA Sbjct: 372 FVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403 Score = 53.5 bits (127), Expect = 5e-07 Identities = 40/135 (29%), Positives = 59/135 (43%) Frame = +3 Query: 42 ITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXX 221 + RS+G+ FV E A A+ NG LL + V V V R Sbjct: 167 VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGH-FVRRQDRARSESGAVPSFT 225 Query: 222 XXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 VY NL + D LK F G+ G + + V+ + +G SR FGFV+F + Sbjct: 226 ---------NVYVKNLPKEITDDELKKTF-GKYGDISSAVVMKDQSGNSRSFGFVNFVSP 275 Query: 402 QDAKAALQAMDGVEL 446 + A A++ M+G+ L Sbjct: 276 EAAAVAVEKMNGISL 290 Score = 49.3 bits (116), Expect = 1e-05 Identities = 35/138 (25%), Positives = 62/138 (44%) Frame = +3 Query: 42 ITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXX 221 +T RS G+A+V A E+A++A++ N A + R +R+ Sbjct: 80 LTHRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLS---------- 129 Query: 222 XXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 G V+ NL + AL F ++ +V + GRS+G+GFV F Sbjct: 130 ------GKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKE 182 Query: 402 QDAKAALQAMDGVELDGR 455 + A+AA+ ++G+ L+ + Sbjct: 183 ETAQAAIDKLNGMLLNDK 200 Score = 36.6 bits (83), Expect = 0.065 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD-TGRSRGFGFVSFHTIQDAKAALQA 428 +Y G+L V L F + RV RD T RS G+ +V+F +DA A+++ Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVC--RDLTHRSLGYAYVNFANPEDASRAMES 104 Query: 429 MDGVELDGRPLRLSLAAQNP 488 ++ + RP+R+ L+ ++P Sbjct: 105 LNYAPIRDRPIRIMLSNRDP 124
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/166 (22%), Positives = 73/166 (43%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV ++A KA+ NG L +T++V++ P Sbjct: 77 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA--- 132 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + L+ F ++ +R++ ++ TG SRG GF+ Sbjct: 133 --------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 178 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 F +A+ A++ ++G + G +++ N P+ + SQ Sbjct: 179 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ 224 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 328 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 372 Score = 38.5 bits (88), Expect = 0.017 Identities = 18/81 (22%), Positives = 43/81 (53%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 DD + L + + ++ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G+ L + +++S A Sbjct: 102 KAINTLNGLRLQTKTIKVSYA 122 Score = 33.1 bits (74), Expect = 0.72 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = +3 Query: 336 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 327 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 371 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRT--VRVNFPEVP 173 S I+ D++T SRG F+ EA +A++ NG G T + V F P Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/166 (22%), Positives = 73/166 (43%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV ++A KA+ NG L +T++V++ P Sbjct: 82 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA--- 137 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + L+ F ++ +R++ ++ TG SRG GF+ Sbjct: 138 --------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 183 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 F +A+ A++ ++G + G +++ N P+ + SQ Sbjct: 184 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ 229 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 333 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 377 Score = 38.5 bits (88), Expect = 0.017 Identities = 18/81 (22%), Positives = 43/81 (53%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 DD + L + + ++ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G+ L + +++S A Sbjct: 107 KAINTLNGLRLQTKTIKVSYA 127 Score = 33.1 bits (74), Expect = 0.72 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = +3 Query: 336 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 332 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 376 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRT--VRVNFPEVP 173 S I+ D++T SRG F+ EA +A++ NG G T + V F P Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/166 (22%), Positives = 73/166 (43%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV ++A KA+ NG L +T++V++ P Sbjct: 70 LVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDA--- 125 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + L+ F ++ +R++ ++ TG SRG GF+ Sbjct: 126 --------------NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 F +A+ A++ ++G + G +++ N P+ + SQ Sbjct: 172 RFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQ 217 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 321 VIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 365 Score = 38.5 bits (88), Expect = 0.017 Identities = 18/81 (22%), Positives = 43/81 (53%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 DD + L + + ++ F + +++ ++ TG+S G+GFV++ +DA+ Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G+ L + +++S A Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115 Score = 33.1 bits (74), Expect = 0.72 Identities = 15/45 (33%), Positives = 28/45 (62%) Frame = +3 Query: 336 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 +VI + +T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 320 KVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 364 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRT--VRVNFPEVP 173 S I+ D++T SRG F+ EA +A++ NG G T + V F P Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 55.1 bits (131), Expect = 2e-07 Identities = 28/79 (35%), Positives = 46/79 (58%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + AL+ F + V+ +R+T RSRGFGF++F + A A++A Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66 Query: 429 MDGVELDGRPLRLSLAAQN 485 M+G LDGR +R+ A ++ Sbjct: 67 MNGESLDGRQIRVDHAGKS 85 Score = 43.9 bits (102), Expect = 4e-04 Identities = 19/44 (43%), Positives = 28/44 (63%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ D+ T RSRGF F+T E A+ A++ NG L GR +RV+ Sbjct: 37 VVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVD 80
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 54.3 bits (129), Expect = 3e-07 Identities = 25/63 (39%), Positives = 45/63 (71%) Frame = +3 Query: 288 DALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 467 ++L +AF ++ +++I +R+T RSRGFGFV+F T + ++A++ M+G ELDGR + + Sbjct: 1 NSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITV 60 Query: 468 SLA 476 + A Sbjct: 61 NEA 63 Score = 47.8 bits (112), Expect = 3e-05 Identities = 27/58 (46%), Positives = 33/58 (56%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 E S II D+ T RSRGF FVT +T E A++ NG L GR + VN + RGG Sbjct: 12 EVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQ-SRGG 68
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 53.9 bits (128), Expect = 4e-07 Identities = 36/140 (25%), Positives = 61/140 (43%) Frame = +3 Query: 57 RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXD 236 RG+AFV E+A +A + NG G + + V + E Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMI 300 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +Y N+ V + L+ F Q G + + + + G+S+GFGFV F T ++A Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFS-QCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAID 359 Query: 417 ALQAMDGVELDGRPLRLSLA 476 A++ G G+PL +++A Sbjct: 360 AVKTFHGQMFHGKPLYVAIA 379 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 4/137 (2%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF----PEVPRGGEXXXXXX 203 D + RS + + + ++A A++ N +LL G+ +RV + P+ R Sbjct: 58 DASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARR--------- 108 Query: 204 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 383 +G V+ NL V L+ F+ +V +V D G+SRG+GF Sbjct: 109 -----------NGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLED-GKSRGYGF 156 Query: 384 VSFHTIQDAKAALQAMD 434 V F A AA+Q ++ Sbjct: 157 VQFEQEDAAHAAIQTLN 173 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/84 (28%), Positives = 42/84 (50%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T +Y G+L V L AF L R+ + +GRS +G+ +F + QDA A+ Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82 Query: 423 QAMDGVELDGRPLRLSLAAQNPPA 494 + + L+G+ +R+ + + P A Sbjct: 83 EKKNNSLLNGKMIRVMWSVRAPDA 106 Score = 37.7 bits (86), Expect = 0.029 Identities = 30/142 (21%), Positives = 57/142 (40%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +SRG+ FV + A A+Q N ++ + + V Sbjct: 150 KSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVG--------------KFMKKTDRVK 195 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 ++ +Y NL V D L+ F + G + + I + + RG+ FV+F +DA Sbjct: 196 PEEKYTNLYMKNLDADVSEDLLREKF-AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDA 254 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 + A + ++G + + L + A Sbjct: 255 RRAAETVNGTKFGSKCLYVGRA 276 Score = 33.9 bits (76), Expect = 0.42 Identities = 15/35 (42%), Positives = 23/35 (65%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 +S+GF FV +T EEA AV+ F+G + G+ + V Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYV 376
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/82 (30%), Positives = 46/82 (56%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D V+ GN+ + + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 414 AALQAMDGVELDGRPLRLSLAA 479 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++YD+ T + +G+ F E A A++ NG GR +RV+ Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 53.9 bits (128), Expect = 4e-07 Identities = 25/82 (30%), Positives = 46/82 (56%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D V+ GN+ + + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 414 AALQAMDGVELDGRPLRLSLAA 479 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++YD+ T + +G+ F E A A++ NG GR +RV+ Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 53.5 bits (127), Expect = 5e-07 Identities = 36/159 (22%), Positives = 71/159 (44%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV + +A KA+ NG L +T++V++ P Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR-PSSASIRDA--- 125 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + ++ F ++ +R++ ++ TG SRG GF+ Sbjct: 126 --------------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFI 171 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 503 F +A+ A++ ++G + G +++ N P+ T Sbjct: 172 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 315 VIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/81 (24%), Positives = 42/81 (51%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 DD + L + D K+ F + +++ ++ TG+S G+GFV++ DA Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G++L + +++S A Sbjct: 95 KAINTLNGLKLQTKTIKVSYA 115 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 53.5 bits (127), Expect = 5e-07 Identities = 43/156 (27%), Positives = 69/156 (44%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEX 188 E T ++ D+ D+ RGF FV A E A KAV N G+ + V + E Sbjct: 286 EITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 ++ NL V + LK F + A+++ + + G+S Sbjct: 345 ELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKS 403 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 +GFGFV + T ++A A+ M+ L G+PL ++LA Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439 Score = 42.4 bits (98), Expect = 0.001 Identities = 23/79 (29%), Positives = 39/79 (49%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G L V L F + RV + T RS G+ +V+FH ++D + AL + Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141 Query: 432 DGVELDGRPLRLSLAAQNP 488 + + GRP R+ + ++P Sbjct: 142 NYTLIKGRPCRIMWSQRDP 160 Score = 38.9 bits (89), Expect = 0.013 Identities = 33/141 (23%), Positives = 56/141 (39%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 ++G+ FV + E A A++ NG LL + V V R + Sbjct: 207 AKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFT----- 261 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 VY NL + F GQ G + + + + + RGFGFV++ + A+ Sbjct: 262 -----NVYIKNLDTEITEQEFSDLF-GQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQ 315 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++ E G+ L + A Sbjct: 316 KAVDELNDKEYKGKKLYVGRA 336
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 53.5 bits (127), Expect = 5e-07 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 2/158 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ D T S G+AFV + ++ +A+++ NG + + ++V++ GGE Sbjct: 158 IMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDT-- 213 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y NL + D L T F +V ++ ++ TGR RG FV Sbjct: 214 --------------NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 259 Query: 387 SFHTIQDAKAALQAMDGVELDG--RPLRLSLAAQNPPA 494 ++ ++A+ A+ A++ V +G +PL + LA ++ A Sbjct: 260 RYNKREEAQEAISALNNVIPEGGSQPLSVRLAQEHGKA 297
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 53.5 bits (127), Expect = 5e-07 Identities = 40/158 (25%), Positives = 75/158 (47%), Gaps = 2/158 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ D T S G+AFV + ++ +A+++ NG + + ++V++ GGE Sbjct: 156 IMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDT-- 211 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y NL + D L T F +V ++ ++ TGR RG FV Sbjct: 212 --------------NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 257 Query: 387 SFHTIQDAKAALQAMDGVELDG--RPLRLSLAAQNPPA 494 ++ ++A+ A+ A++ V +G +PL + LA ++ A Sbjct: 258 RYNKREEAQEAISALNNVIPEGGSQPLSVRLAEEHGKA 295
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 53.1 bits (126), Expect = 7e-07 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 1/161 (0%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D++T +GF FV E+A A+++ N L G+ ++VN Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVN----------------KAS 90 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGA-RVIFERDTGRSRGFGFVSF 392 D G ++ GNL V L F ++ +++ + D+G S+GF F++F Sbjct: 91 AHEKNMDVGA-NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINF 149 Query: 393 HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 515 + + + AL+AM+G L R + +S A + G TA Sbjct: 150 ASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTA 190 Score = 37.4 bits (85), Expect = 0.038 Identities = 21/76 (27%), Positives = 39/76 (51%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G L V L +V + +R T +GFGFV F +DA A++ + Sbjct: 15 IYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKIL 74 Query: 432 DGVELDGRPLRLSLAA 479 + ++L G+P++++ A+ Sbjct: 75 NMIKLYGKPIKVNKAS 90 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/45 (33%), Positives = 26/45 (57%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 I+ D + S+GFAF+ A+ E + A++ NG L R + V++ Sbjct: 132 IMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSY 176
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/82 (30%), Positives = 46/82 (56%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D V+ GN+ + + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 414 AALQAMDGVELDGRPLRLSLAA 479 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++YD+ T + +G+ F E A A++ NG GR +RV+ Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 53.1 bits (126), Expect = 7e-07 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 2/158 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ D T S G+AFV A ++ +A++ NG + + ++V++ GGE Sbjct: 141 IMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYAR--PGGESIKDT-- 196 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y NL + D L T F +V ++ ++ TG+ RG FV Sbjct: 197 --------------NLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFV 242 Query: 387 SFHTIQDAKAALQAMDGVELDG--RPLRLSLAAQNPPA 494 F+ ++A+ A+ A++ V +G +PL + LA ++ A Sbjct: 243 RFNKREEAQEAISALNNVIPEGASQPLTVRLAEEHGKA 280
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/82 (30%), Positives = 46/82 (56%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D V+ GN+ + + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 414 AALQAMDGVELDGRPLRLSLAA 479 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++YD+ T + +G+ F E A A++ NG GR +RV+ Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/82 (30%), Positives = 46/82 (56%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D V+ GN+ + + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 414 AALQAMDGVELDGRPLRLSLAA 479 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++YD+ T + +G+ F E A A++ NG GR +RV+ Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 53.1 bits (126), Expect = 7e-07 Identities = 25/82 (30%), Positives = 46/82 (56%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D V+ GN+ + + LK F +V R++++R+TG+ +G+GF + + A Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71 Query: 414 AALQAMDGVELDGRPLRLSLAA 479 +A++ ++G E GR LR+ AA Sbjct: 72 SAMRNLNGREFSGRALRVDNAA 93 Score = 33.1 bits (74), Expect = 0.72 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++YD+ T + +G+ F E A A++ NG GR +RV+ Sbjct: 47 LVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 90
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 52.8 bits (125), Expect = 9e-07 Identities = 36/159 (22%), Positives = 71/159 (44%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ DKIT +S G+ FV + +A KA+ NG L +T++V++ P Sbjct: 70 LVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYAR-PSSASIRDA--- 125 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y L + ++ F ++ +R++ ++ TG SRG GF+ Sbjct: 126 --------------NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFI 171 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 503 F +A+ A++ ++G + G +++ N P+ T Sbjct: 172 RFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKT 210 Score = 42.7 bits (99), Expect = 0.001 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM +EAA A+ NG LG R ++V+F Sbjct: 315 VIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF 359 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/81 (24%), Positives = 42/81 (51%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 DD + L + D K+ F + +++ ++ TG+S G+GFV++ DA Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ ++G++L + +++S A Sbjct: 95 KAINTLNGLKLQTKTIKVSYA 115 Score = 32.3 bits (72), Expect = 1.2 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 + +VI + T + +GFGFV+ +A A+ +++G L R L++S Sbjct: 310 VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVS 358
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 52.8 bits (125), Expect = 9e-07 Identities = 42/180 (23%), Positives = 71/180 (39%), Gaps = 4/180 (2%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEX 188 E + +I DK+ S G+ FV TA++A +A+ NG L +T++V++ Sbjct: 45 EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY--------- 95 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 D +Y L + ++ F ++ +RV+ ++ TG S Sbjct: 96 -------ARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLS 146 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPST----AQSQQEKN 536 RG F+ F +A+ A+ + +G PP S P T A Q KN Sbjct: 147 RGVAFIRFDKRSEAEEAITSFNG--------------HKPPGSSEPITVKFAANPNQNKN 192 Score = 42.0 bits (97), Expect = 0.002 Identities = 20/45 (44%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM EEAA A+ NG LG + ++V+F Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSF 319 Score = 37.7 bits (86), Expect = 0.029 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 34/184 (18%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRT--VRVNFPEVPRGGEXXX 194 S ++ D+ T SRG AF+ EA +A+ FNG G + + V F P + Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVA 194 Query: 195 XXXXXXXXXXXXXDDGTYK--------------------------------VYAGNLGWG 278 + ++ NLG Sbjct: 195 LLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQD 254 Query: 279 VRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRP 458 L F + +VI + +T + +GFGFV+ ++A A+ +++G L + Sbjct: 255 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKI 314 Query: 459 LRLS 470 L++S Sbjct: 315 LQVS 318
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 52.8 bits (125), Expect = 9e-07 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y GNL + V L F + ++ +R+TGR RGFGFV + AA++A+ Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62 Query: 432 DGVELDGRPLRLSLA 476 DG E GR L+++ A Sbjct: 63 DGAEWMGRDLKVNKA 77 Score = 33.1 bits (74), Expect = 0.72 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 D+ T R RGF FV + E A++ +GA GR ++VN Sbjct: 35 DRETGRMRGFGFVELEADAEETAAIEALDGAEWMGRDLKVN 75
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 52.8 bits (125), Expect = 9e-07 Identities = 40/155 (25%), Positives = 73/155 (47%), Gaps = 2/155 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ D T S G+AFV A+ +A A++ NG + + ++V++ GGE Sbjct: 116 IMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR--PGGESIKDT-- 171 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 +Y NL + D L+ F +V ++ ++ TG+ RG FV Sbjct: 172 --------------NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFV 217 Query: 387 SFHTIQDAKAALQAMDGVELDG--RPLRLSLAAQN 485 F+ ++A+ A+ A++ V +G +PL + LA ++ Sbjct: 218 RFNKREEAQEAISALNNVIPEGASQPLTVRLAEEH 252
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 52.8 bits (125), Expect = 9e-07 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 294 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 474 AAQNPPAGSTP 506 + P TP Sbjct: 194 SITKRPHTPTP 204 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 182 I+YD+ + RSRGFAFV ++A +A + NG L GR +RV+F P P G Sbjct: 149 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG 205
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 52.8 bits (125), Expect = 9e-07 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 294 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 474 AAQNPPAGSTP 506 + P TP Sbjct: 194 SITKRPHTPTP 204 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 182 I+YD+ + RSRGFAFV ++A +A + NG L GR +RV+F P P G Sbjct: 149 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG 205
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 52.8 bits (125), Expect = 9e-07 Identities = 24/71 (33%), Positives = 39/71 (54%) Frame = +3 Query: 294 LKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 L+ F + +++++ + RSRGF FV F + DAK A + +G+ELDGR +R+ Sbjct: 134 LREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 193 Query: 474 AAQNPPAGSTP 506 + P TP Sbjct: 194 SITKRPHTPTP 204 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 5/57 (8%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 182 I+YD+ + RSRGFAFV ++A +A + NG L GR +RV+F P P G Sbjct: 149 IVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPG 205
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 52.0 bits (123), Expect = 1e-06 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD---TGR--SRGFGFVSFHTIQD 407 T V+ NL + AL F+ PG V A V + D +G+ S GFGFV F T + Sbjct: 616 TVAVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQ 675 Query: 408 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 521 A A+ +DG LDG L+L L+ + S S +S Sbjct: 676 ANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKS 713 Score = 49.7 bits (117), Expect = 7e-06 Identities = 39/145 (26%), Positives = 60/145 (41%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV T E+A A+ +G +L G +++ G Sbjct: 662 SMGFGFVEFRTKEQANVAISTLDGHVLDGHKLQLKLSHKQGTGTSASSIKKSGKSS---- 717 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 K+ NL + L F L RV + D +RGF FV F+ +++A+ Sbjct: 718 -----KIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS-ARGFAFVEFNLMKEAE 771 Query: 414 AALQAMDGVELDGRPLRLSLAAQNP 488 A+ ++GV L GR L + A Q+P Sbjct: 772 TAMSQLEGVHLLGRRLVMQYAEQDP 796 Score = 34.7 bits (78), Expect = 0.25 Identities = 18/75 (24%), Positives = 36/75 (48%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T +++ N+ + + ++ F L + + TG+S+GF +V F +DA A Sbjct: 309 TGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAY 368 Query: 423 QAMDGVELDGRPLRL 467 +++D GR L + Sbjct: 369 RSLDKQIFQGRLLHI 383
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 51.6 bits (122), Expect = 2e-06 Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 3/125 (2%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTM---ATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXX 197 I+ D T RSRGF F++ ++ +E K + +G ++ + +PR + Sbjct: 190 IMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRA------IPRDEQ---- 239 Query: 198 XXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGF 377 D T K++ G +G VR + F ++ A+++ ++DTG+SRGF Sbjct: 240 -------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGF 286 Query: 378 GFVSF 392 GFV++ Sbjct: 287 GFVTY 291 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH---TIQDAKAA 419 K++ G L W D L+ F + +++ + TGRSRGFGF+SF ++ + Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT 219 Query: 420 LQAMDGVELD 449 +DG +D Sbjct: 220 QHILDGKVID 229
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 51.2 bits (121), Expect = 3e-06 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 4/180 (2%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEX 188 E + +I DK+ S G+ FV TA++A +A+ NG L +T++V++ Sbjct: 45 EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSY--------- 95 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 D +Y L + ++ F ++ +RV+ ++ TG S Sbjct: 96 -------ARPSSEVIKDA--NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLS 146 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPST----AQSQQEKN 536 RG F+ F +A+ A+ + G PP S P T A Q KN Sbjct: 147 RGVAFIRFDKRSEAEEAITSFIG--------------HKPPGSSEPITVKFAANPNQNKN 192 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/45 (42%), Positives = 29/45 (64%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +I D T++ +GF FVTM EE+A A+ NG LG + ++V+F Sbjct: 275 VIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVSF 319 Score = 33.9 bits (76), Expect = 0.42 Identities = 18/73 (24%), Positives = 37/73 (50%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ NLG L F + +VI + +T + +GFGFV+ +++ A+ ++ Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASL 305 Query: 432 DGVELDGRPLRLS 470 +G L + L++S Sbjct: 306 NGYRLGDKILQVS 318
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 50.8 bits (120), Expect = 3e-06 Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 5/94 (5%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 398 D T ++ NL + + L F+ G V A+V + D + S GFGFV F T Sbjct: 636 DGPTVSIFIKNLNFKTTSQQLTDRFKVFSGFVVAQVKTKPDPKQKNKVLSMGFGFVEFRT 695 Query: 399 IQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 + A A + AMDG +DG ++L L+ + AGS Sbjct: 696 KEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGS 729 Score = 38.9 bits (89), Expect = 0.013 Identities = 36/143 (25%), Positives = 55/143 (38%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV T E+A + +G ++ G +++ R G Sbjct: 685 SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSH--RQGNAGSQEKKKAKNG---- 738 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 K+ NL + + F L RV + D +RGF FV F ++A+ Sbjct: 739 -----KIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFVLPKEAE 792 Query: 414 AALQAMDGVELDGRPLRLSLAAQ 482 A+ + GV L GR L + A Q Sbjct: 793 NAMDQLQGVHLLGRRLVMQPAEQ 815
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/78 (33%), Positives = 44/78 (56%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L AL+ F +V ++ +R+T +SRGF FV+F + DAK A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68 Query: 429 MDGVELDGRPLRLSLAAQ 482 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86 Score = 38.1 bits (87), Expect = 0.022 Identities = 17/43 (39%), Positives = 28/43 (65%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 ++ D+ T++SRGFAFVT + +A A + NG L G+ ++V Sbjct: 39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 50.4 bits (119), Expect = 4e-06 Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 2/164 (1%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLG-GRTVRVNFPEVPRGGE 185 +A +I ++ T + G+ FV A+ EA+ A+ M N + G ++N+ GG Sbjct: 118 KAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMNNKPIPGTNHLFKLNWAS---GGG 174 Query: 186 XXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQ-PGLVGARVIFERDTG 362 Y ++ G+L V + + F + A+++ + T Sbjct: 175 LREKSISKASE---------YSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTN 225 Query: 363 RSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 494 SRG+GFV F D K+AL M G RP+R+ LA A Sbjct: 226 VSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269 Score = 42.0 bits (97), Expect = 0.002 Identities = 40/184 (21%), Positives = 62/184 (33%), Gaps = 12/184 (6%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX---- 194 I+ D T+ SRG+ FV + A+ G + G R +RV Sbjct: 218 IMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNV 277 Query: 195 --------XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFE 350 D V+ G L V + LK F+ +V ++ Sbjct: 278 VPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKI--- 334 Query: 351 RDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQE 530 +G GFV F Q A+ A+ + G L +RLS P + QSQ Sbjct: 335 ---PPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVS 391 Query: 531 KNSL 542 + ++ Sbjct: 392 QTTI 395
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3| Length = 388 Score = 50.1 bits (118), Expect = 6e-06 Identities = 31/102 (30%), Positives = 55/102 (53%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 + + GNL + + + L F G+ R++ + T RSRGFG+V F T AAL Sbjct: 94 FTAHVGNLSFDLTENDLGDFFG--EGVTSIRLVIDPLTERSRGFGYVEFETADTLSAAL- 150 Query: 426 AMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTWI 551 A+ G +L GRP+R+++A P + +++E+++ W+ Sbjct: 151 ALSGEDLMGRPVRITVA--------EPRRSFAREERSTGDWV 184 Score = 36.2 bits (82), Expect = 0.085 Identities = 20/54 (37%), Positives = 31/54 (57%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 T ++ D +T+RSRGF +V TA+ + A+ + +G L GR VR+ E R Sbjct: 119 TSIRLVIDPLTERSRGFGYVEFETADTLSAALAL-SGEDLMGRPVRITVAEPRR 171
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 50.1 bits (118), Expect = 6e-06 Identities = 40/169 (23%), Positives = 68/169 (40%), Gaps = 9/169 (5%) Frame = +3 Query: 63 FAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG 242 + FV +++ A +A+ +N ++ G GG D Sbjct: 130 YCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGG---------IQHNNFVSRDP 180 Query: 243 TYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 419 + ++ G+L L F P A++I + TG SR +GFV F + ++ + A Sbjct: 181 EFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHA 240 Query: 420 LQAMDGVELDGRPLRLSLA--------AQNPPAGSTPSTAQSQQEKNSL 542 L M G GRPLR+S+A A + G P++ ++Q L Sbjct: 241 LMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDL 289
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 50.1 bits (118), Expect = 6e-06 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%) Frame = +3 Query: 129 LLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDG-TYKVYAGNLGWGVRADALKTA 305 LL G + E+ + E DG T ++ NL + + L Sbjct: 572 LLEGDAAPEDVKEIKKSVEDVMDADSKTPSSEATAIDGPTVSIFVKNLNFSTTSAQLAEK 631 Query: 306 FEGQPGLVGARVIFERDTGRS-----RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLS 470 F+ G V A+V + D S GFGF+ F T + A A + AMDG +DG ++L Sbjct: 632 FKPFSGFVVAQVKTKPDPKNSDKKLSMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLK 691 Query: 471 LAAQNPPAGSTPSTAQSQQEKNS 539 ++ + S P T++ ++K S Sbjct: 692 ISHKQ---SSLPKTSKGSKKKIS 711 Score = 40.8 bits (94), Expect = 0.003 Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 7/150 (4%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV-------NFPEVPRGGEXXXXXXXXX 212 S GF F+ T E+A + +GA++ G +++ + P+ +G + Sbjct: 657 SMGFGFIEFRTKEQAGAVIAAMDGAVIDGHKIQLKISHKQSSLPKTSKGSKKKISG---- 712 Query: 213 XXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 392 K+ NL + + F L RV + D +RGF FV F Sbjct: 713 ------------KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEF 759 Query: 393 HTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 +A+ A+ + GV L GR L + A Q Sbjct: 760 LLPSEAENAMDQLQGVHLLGRRLVMQYAEQ 789
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.7 bits (117), Expect = 7e-06 Identities = 38/153 (24%), Positives = 64/153 (41%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T S + + +S+GF FV T E A KAV +G + G+ + V + Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL + + LK F + A+V+ E G+ +G Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKG 342 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 FG V F + ++A A+ M+G + +PL ++L Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTL 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 224 S+G+A+V + A +A+ NG L R V R FPE R E Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193 Query: 225 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 D T+ V+ N+G + + LK F +VI + +G+S+GFGFV + T Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249 Query: 402 QDAKAALQAMDGVELDGRPLRLSLA 476 + A+ A+ + G +DG+ L + A Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G+L V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 432 DGVELDGRPLRL 467 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 34.7 bits (78), Expect = 0.25 Identities = 31/143 (21%), Positives = 57/143 (39%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I D +T G+ +V +A A+ N L+ G+ R+ + + Sbjct: 49 ICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD----------- 97 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++ NL + AL F ++ +V+ + D G S+G+ +V Sbjct: 98 -----DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYV 150 Query: 387 SFHTIQDAKAALQAMDGVELDGR 455 F ++ A A+ M+GV L+ R Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNR 173 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 + +GF V ++ EEA KAV NG ++G + + V + R Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQARR 380
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 49.7 bits (117), Expect = 7e-06 Identities = 38/149 (25%), Positives = 69/149 (46%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ DKI+ RS+G A+V E++ +A +G L G V V E + + Sbjct: 271 IVRDKISGRSKGVAYVEFCH-EDSVQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAEL 329 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 + +++ N+ + + + +K FE G + + D RS+GFG++ Sbjct: 330 ARAASA---EIPFHRLCVSNIHFNLTDEDVKAIFEPF-GDIEFVHLQRDDQNRSKGFGYI 385 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSL 473 + A+ AL+ M+G +L GR +R+ L Sbjct: 386 QYRNPISARNALEKMNGFDLAGRNMRVCL 414
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/153 (24%), Positives = 64/153 (41%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T S + + +S+GF FV T E A KAV +G + G+ + V + Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL + + LK F + A+V+ E G+ +G Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKG 342 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 FG V F + ++A A+ M+G + +PL ++L Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 224 S+G+A+V + A +A+ NG L R V R FPE R E Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193 Query: 225 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 D T+ V+ N+G + + LK F +VI + +G+S+GFGFV + T Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249 Query: 402 QDAKAALQAMDGVELDGRPLRLSLA 476 + A+ A+ + G +DG+ L + A Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G+L V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 432 DGVELDGRPLRL 467 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 34.7 bits (78), Expect = 0.25 Identities = 31/143 (21%), Positives = 57/143 (39%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I D +T G+ +V +A A+ N L+ G+ R+ + + Sbjct: 49 ICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD----------- 97 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++ NL + AL F ++ +V+ + D G S+G+ +V Sbjct: 98 -----DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYV 150 Query: 387 SFHTIQDAKAALQAMDGVELDGR 455 F ++ A A+ M+GV L+ R Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNR 173 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 + +GF V ++ EEA KAV NG ++G + + V + R Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/153 (24%), Positives = 64/153 (41%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T S + + +S+GF FV T E A KAV +G + G+ + V + Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL + + LK F + A+V+ E G+ +G Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKG 342 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 FG V F + ++A A+ M+G + +PL ++L Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 224 S+G+A+V + A +A+ NG L R V R FPE R E Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193 Query: 225 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 D T+ V+ N+G + + LK F +VI + +G+S+GFGFV + T Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249 Query: 402 QDAKAALQAMDGVELDGRPLRLSLA 476 + A+ A+ + G +DG+ L + A Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G+L V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 432 DGVELDGRPLRL 467 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 34.7 bits (78), Expect = 0.25 Identities = 31/143 (21%), Positives = 57/143 (39%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I D +T G+ +V +A A+ N L+ G+ R+ + + Sbjct: 49 ICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD----------- 97 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++ NL + AL F ++ +V+ + D G S+G+ +V Sbjct: 98 -----DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYV 150 Query: 387 SFHTIQDAKAALQAMDGVELDGR 455 F ++ A A+ M+GV L+ R Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNR 173 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 + +GF V ++ EEA KAV NG ++G + + V + R Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/153 (24%), Positives = 64/153 (41%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T S + + +S+GF FV T E A KAV +G + G+ + V + Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL + + LK F + A+V+ E G+ +G Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKG 342 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 FG V F + ++A A+ M+G + +PL ++L Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 224 S+G+A+V + A +A+ NG L R V R FPE R E Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193 Query: 225 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 D T+ V+ N+G + + LK F +VI + +G+S+GFGFV + T Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249 Query: 402 QDAKAALQAMDGVELDGRPLRLSLA 476 + A+ A+ + G +DG+ L + A Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G+L V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 432 DGVELDGRPLRL 467 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 34.7 bits (78), Expect = 0.25 Identities = 31/143 (21%), Positives = 57/143 (39%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I D +T G+ +V +A A+ N L+ G+ R+ + + Sbjct: 49 ICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD----------- 97 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++ NL + AL F ++ +V+ + D G S+G+ +V Sbjct: 98 -----DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYV 150 Query: 387 SFHTIQDAKAALQAMDGVELDGR 455 F ++ A A+ M+GV L+ R Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNR 173 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 + +GF V ++ EEA KAV NG ++G + + V + R Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/153 (24%), Positives = 64/153 (41%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T S + + +S+GF FV T E A KAV +G + G+ + V + Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL + + LK F + A+V+ E G+ +G Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKG 342 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 FG V F + ++A A+ M+G + +PL ++L Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 224 S+G+A+V + A +A+ NG L R V R FPE R E Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193 Query: 225 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 D T+ V+ N+G + + LK F +VI + +G+S+GFGFV + T Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249 Query: 402 QDAKAALQAMDGVELDGRPLRLSLA 476 + A+ A+ + G +DG+ L + A Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G+L V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 432 DGVELDGRPLRL 467 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 34.7 bits (78), Expect = 0.25 Identities = 31/143 (21%), Positives = 57/143 (39%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I D +T G+ +V +A A+ N L+ G+ R+ + + Sbjct: 49 ICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD----------- 97 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++ NL + AL F ++ +V+ + D G S+G+ +V Sbjct: 98 -----DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYV 150 Query: 387 SFHTIQDAKAALQAMDGVELDGR 455 F ++ A A+ M+GV L+ R Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNR 173 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 + +GF V ++ EEA KAV NG ++G + + V + R Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 49.3 bits (116), Expect = 1e-05 Identities = 38/153 (24%), Positives = 64/153 (41%) Frame = +3 Query: 15 TMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXX 194 T S + + +S+GF FV T E A KAV +G + G+ + V + Sbjct: 225 TESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAEL 284 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 +Y NL + + LK F + A+V+ E G+ +G Sbjct: 285 RRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKG 342 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 FG V F + ++A A+ M+G + +PL ++L Sbjct: 343 FGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTL 375 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTV---RVNFPEVPRGGEXXXXXXXXXXXXX 224 S+G+A+V + A +A+ NG L R V R FPE R E Sbjct: 144 SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPE-ERAAEVRTR--------- 193 Query: 225 XXXDDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTI 401 D T+ V+ N+G + + LK F +VI + +G+S+GFGFV + T Sbjct: 194 ---DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETH 249 Query: 402 QDAKAALQAMDGVELDGRPLRLSLA 476 + A+ A+ + G +DG+ L + A Sbjct: 250 EAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 35.4 bits (80), Expect = 0.14 Identities = 23/72 (31%), Positives = 35/72 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G+L V D L F L R+ + T G+G+V+F DA+ AL M Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79 Query: 432 DGVELDGRPLRL 467 + ++G+P RL Sbjct: 80 NFDLINGKPFRL 91 Score = 34.7 bits (78), Expect = 0.25 Identities = 31/143 (21%), Positives = 57/143 (39%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I D +T G+ +V +A A+ N L+ G+ R+ + + Sbjct: 49 ICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPD----------- 97 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G ++ NL + AL F ++ +V+ + D G S+G+ +V Sbjct: 98 -----DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD-DNG-SKGYAYV 150 Query: 387 SFHTIQDAKAALQAMDGVELDGR 455 F ++ A A+ M+GV L+ R Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNR 173 Score = 32.0 bits (71), Expect = 1.6 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 + +GF V ++ EEA KAV NG ++G + + V + R Sbjct: 339 QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQARR 380
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 49.3 bits (116), Expect = 1e-05 Identities = 40/164 (24%), Positives = 69/164 (42%) Frame = +3 Query: 57 RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXD 236 +GF FV E+A KAV+ N + L G + V + Sbjct: 258 KGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAK 317 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 ++ NL V + L+ F + A+V+ + G+S+GFGFV F T ++A Sbjct: 318 YQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVM-RTENGKSKGFGFVCFSTPEEATK 376 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLTW 548 A+ + + G+PL +++A + S AQ Q +N + + Sbjct: 377 AITEKNQQIVAGKPLYVAIAQRKDVRRS--QLAQQIQARNQMRY 418 Score = 48.1 bits (113), Expect = 2e-05 Identities = 35/142 (24%), Positives = 63/142 (44%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXX 215 D IT S G+A+V E KA++ N + GR R+ + + Sbjct: 71 DAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQ---------------- 114 Query: 216 XXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFH 395 G+ ++ NL + AL F ++ +++ + + G+S+GFGFV F Sbjct: 115 RDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFE 173 Query: 396 TIQDAKAALQAMDGVELDGRPL 461 AK A+ A++G+ L+G+ + Sbjct: 174 EEGAAKEAIDALNGMLLNGQEI 195 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/142 (25%), Positives = 61/142 (42%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +S+GF FV A +A+ NG LL G+ + V P + R Sbjct: 163 KSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA-PHLSRKERDSQLEETKAHYT--- 218 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 +Y N+ + + F +V A + + D G+ +GFGFV++ +DA Sbjct: 219 ------NLYVKNINSETTDEQFQELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDA 271 Query: 411 KAALQAMDGVELDGRPLRLSLA 476 A++A++ EL+G L + A Sbjct: 272 VKAVEALNDSELNGEKLYVGRA 293 Score = 31.6 bits (70), Expect = 2.1 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 +S+GF FV +T EEA KA+ N ++ G+ + V Sbjct: 359 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 393
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 48.9 bits (115), Expect = 1e-05 Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 6/176 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEE---AAKAVQMFNGALLGGRTVRV---NFPEVPRGGEX 188 ++ +K + RGF +VT + E+ A K + F G + + N + E Sbjct: 34 VVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNEN 93 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 D ++ NL + D LKT F Q G V I + G+ Sbjct: 94 SECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVF-AQFGAVLEVNIPRKPDGKM 152 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKN 536 RGFGFV F + +A AL+ M+ E+ GR + + A T S + +EK+ Sbjct: 153 RGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKS 208 Score = 32.7 bits (73), Expect = 0.94 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ G L R++ L+ F + V+ E+ + RGFG+V+F ++D + AL+ + Sbjct: 5 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 432 DGVE 443 E Sbjct: 65 TTFE 68
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 48.9 bits (115), Expect = 1e-05 Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 5/104 (4%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 407 T ++ NL + + L F+ G V A+V + D + S GFGF F T + Sbjct: 650 TVSIFIKNLNFSTTSQQLTEKFKPFNGFVVAQVKTKPDPKQPGKTLSMGFGFAEFKTKEQ 709 Query: 408 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNS 539 A A + AM+G LDG L+L L+ + G++ + A S+++K + Sbjct: 710 ANAVISAMEGTILDGHKLQLKLSHRQ---GTSTTNASSKKKKKN 750 Score = 40.0 bits (92), Expect = 0.006 Identities = 36/145 (24%), Positives = 54/145 (37%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF F T E+A + G +L G +++ R G Sbjct: 696 SMGFGFAEFKTKEQANAVISAMEGTILDGHKLQLKLSH--RQGTSTTNASSKKKKKNQG- 752 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 K+ NL + + F L RV + D +RGF FV F ++A+ Sbjct: 753 -----KIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAE 806 Query: 414 AALQAMDGVELDGRPLRLSLAAQNP 488 A+ + GV L GR L + Q+P Sbjct: 807 NAMDQLQGVHLLGRRLVMEFVEQDP 831 Score = 31.2 bits (69), Expect = 2.7 Identities = 18/75 (24%), Positives = 32/75 (42%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T +++ N+ + D + F L + + TG+S+GF +V F +A A Sbjct: 329 TGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAF 388 Query: 423 QAMDGVELDGRPLRL 467 +D GR L + Sbjct: 389 VELDKQIFQGRLLHI 403 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/43 (37%), Positives = 21/43 (48%) Frame = +3 Query: 39 KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 K +RGFAFV +EA A+ G L GR + + F E Sbjct: 786 KFDKSARGFAFVEFLLPKEAENAMDQLQGVHLLGRRLVMEFVE 828
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L AL+ F +V ++ +R+T +SRGF FV+F + DAK + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68 Query: 429 MDGVELDGRPLRLSLAAQ 482 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86 Score = 36.6 bits (83), Expect = 0.065 Identities = 16/43 (37%), Positives = 27/43 (62%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 ++ D+ T++SRGFAFVT + +A + NG L G+ ++V Sbjct: 39 LMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKV 81
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 48.9 bits (115), Expect = 1e-05 Identities = 27/86 (31%), Positives = 47/86 (54%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 +G + NL + + L+ FE + + ++ + +S+GFGFV F+ +DA+ Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPA 494 AL DG +DGR LR++LA + P+ Sbjct: 76 ALDRTDGKLVDGRELRVTLAKYDRPS 101 Score = 32.7 bits (73), Expect = 0.94 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF-----PEVPRGG 182 DK + +S+GF FV +A A+ +G L+ GR +RV P RGG Sbjct: 53 DKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDERGG 106
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 48.1 bits (113), Expect = 2e-05 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 398 D T ++ NL + L F+ G V A+V + D S GFGFV F T Sbjct: 659 DGPTVSIFIKNLNFSTTNQNLTDRFKVFTGFVVAQVKTKPDPKHQGKTLSMGFGFVEFRT 718 Query: 399 IQDAKAALQAMDGVELDGRPLRLSLA-AQNPPAGSTPSTAQSQQEK 533 + A A + AMDG +DG ++L L+ Q +G+T + + + K Sbjct: 719 KEQANAVIAAMDGTVIDGHKIQLKLSHRQASQSGNTKTKSNKKSGK 764 Score = 38.1 bits (87), Expect = 0.022 Identities = 33/144 (22%), Positives = 56/144 (38%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV T E+A + +G ++ G +++ Sbjct: 708 SMGFGFVEFRTKEQANAVIAAMDGTVIDGHKIQLKLSH---------RQASQSGNTKTKS 758 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 + + K+ NL + + F L RV + D +RGF FV F ++A+ Sbjct: 759 NKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKS-ARGFAFVEFLLPKEAE 817 Query: 414 AALQAMDGVELDGRPLRLSLAAQN 485 A+ + GV L GR L + A ++ Sbjct: 818 NAMDQLHGVHLLGRRLVMQYAEED 841 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/72 (26%), Positives = 34/72 (47%) Frame = +3 Query: 318 PGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAG 497 P L+ I G SR FGF+ + +DA A++ +G ++ + +S+A + Sbjct: 40 PDLITDVKILRDRNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMA----KSF 95 Query: 498 STPSTAQSQQEK 533 + P Q +EK Sbjct: 96 ADPRVPQPMKEK 107
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 48.1 bits (113), Expect = 2e-05 Identities = 42/160 (26%), Positives = 68/160 (42%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S G+ FV + + A A + +G +L T+ V F R E Sbjct: 666 SMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFAR--RNAEASTTSISSG------- 716 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 G+ K+ NL + ++ F Q L R+ + D +RGFGFV + T+++A+ Sbjct: 717 --GSTKILIKNLPFEATKRDIRDLFSSQGQLKSVRLPKKFDN-TTRGFGFVEYSTVREAQ 773 Query: 414 AALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 533 +A++A+ L GR L L + A ST Q+ K Sbjct: 774 SAMEALKHTHLLGRHLVLQWSHL---ASSTQQQVDMQRSK 810 Score = 47.4 bits (111), Expect = 4e-05 Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKA 416 +Y NL + + L F G AR+ + D R S G+GFV F +I A+ Sbjct: 623 LYVKNLSFSTTDERLTAFFHGLSDFAFARIQTKPDPRRPGARLSMGYGFVGFKSIDAART 682 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGST 503 A +AMDG LD L ++ A +N A +T Sbjct: 683 AQKAMDGKVLDAHTLVVTFARRNAEASTT 711 Score = 40.4 bits (93), Expect = 0.004 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ NL + D + FE + + ++ T S+G FVSF A AA +A Sbjct: 315 RLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHALAAYRA 374 Query: 429 MDGVELDGRPLRL-------SLAAQNPPAGSTPSTAQSQQEKNSLT 545 DG GR L L +LA +T A+++Q+K T Sbjct: 375 KDGSTFQGRLLHLLPAVNKDALAETGSKKTATLKQARAEQKKQDAT 420
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4| protein) Length = 689 Score = 48.1 bits (113), Expect = 2e-05 Identities = 44/164 (26%), Positives = 67/164 (40%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +SRG A V E KA ++ N L GR ++V E P G Sbjct: 108 KSRGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKVK--EDPDGEHARRAMQKAGRLGST- 164 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 V+ NL + V LK F +V A ++ ++D G+SRG G V+F +A Sbjct: 165 -------VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEA 216 Query: 411 KAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 542 A+ +G L RP+ + + + P G + QQ + L Sbjct: 217 VQAISMFNGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 260 Score = 35.4 bits (80), Expect = 0.14 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRG 179 I+ DK +SRG VT + EA +A+ MFNG LL R + V E +P+G Sbjct: 194 ILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 245 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/74 (27%), Positives = 36/74 (48%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y+ + N+ + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 69 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128 Query: 426 AMDGVELDGRPLRL 467 ++ L GRPL++ Sbjct: 129 VLNKHSLSGRPLKV 142 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ NL + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 613 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 670 Query: 429 MDGVELDGRPL 461 M+G++L GR + Sbjct: 671 MNGMKLSGREI 681
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 47.8 bits (112), Expect = 3e-05 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L AL+ F +V ++ +R+T +SRGF FV+ + DAK A + Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARD 68 Query: 429 MDGVELDGRPLRLSLAAQ 482 M+G LDG+ +++ A + Sbjct: 69 MNGKSLDGKAIKVEQATK 86 Score = 38.9 bits (89), Expect = 0.013 Identities = 17/43 (39%), Positives = 29/43 (67%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 ++ D+ T++SRGFAFVT+ + +A A + NG L G+ ++V Sbjct: 39 LMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKV 81
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 47.8 bits (112), Expect = 3e-05 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 407 T +Y NL + + + + F+ G + A + + D R S GFGFV F Sbjct: 618 TATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKAS 677 Query: 408 AKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNS 539 A AA+ AM+G LDG L + L+ Q A + S + K + Sbjct: 678 AVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDSSKPKGT 721 Score = 36.6 bits (83), Expect = 0.065 Identities = 20/75 (26%), Positives = 33/75 (44%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T +++ NL + D LK+ F L + ++ T +GF ++ FH DA A Sbjct: 322 TKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAY 381 Query: 423 QAMDGVELDGRPLRL 467 +D GR L + Sbjct: 382 LELDAKPFQGRLLHV 396 Score = 35.4 bits (80), Expect = 0.14 Identities = 35/142 (24%), Positives = 52/142 (36%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV A A+ NG +L G + + Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKL------SHQGVDAAAEVRKQDSSK 717 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 GT K+ NL + +++ L RV + D +RGF F F T ++A Sbjct: 718 PKGT-KILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRS-ARGFAFAEFVTAREAA 775 Query: 414 AALQAMDGVELDGRPLRLSLAA 479 A++A+ L GR L L A+ Sbjct: 776 NAMRALKNTHLLGRHLVLQYAS 797
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 47.4 bits (111), Expect = 4e-05 Identities = 25/85 (29%), Positives = 45/85 (52%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ + ++ D L+ F + R++ E T SRGFGF+SF T+++A +A+ + Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNL 162 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTP 506 + E GR L + A ++ P TP Sbjct: 163 NSQEFYGRVLNVQKAKRSRPHSPTP 187 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 I+ + +T SRGF F++ +T EEA A+ N GR + V Sbjct: 132 IMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNV 174
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 47.4 bits (111), Expect = 4e-05 Identities = 41/158 (25%), Positives = 65/158 (41%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++Y + T S+G+ F + AA+A G LG RT+ V++ + G+ Sbjct: 163 LVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA---GQLTPALLH 219 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G V DAL+ A ++ +D G+ +GF + Sbjct: 220 SRCLCVDHLPPGFNDV-----------DALRQALSAVYTPTFCQLASGQD-GQLKGFAVL 267 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 + T + A+AA Q DG+ L G LR+S A PP S Sbjct: 268 EYETAEMAEAAQQRADGLALGGSHLRVSFCAPGPPGRS 305
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 46.2 bits (108), Expect = 8e-05 Identities = 21/66 (31%), Positives = 36/66 (54%) Frame = +3 Query: 336 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTA 515 +++ + T RSRGF F+ F + DA+AA + G+E+DGR +R+ + TP Sbjct: 127 QMVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFSITQRAHTPTPGVY 186 Query: 516 QSQQEK 533 +Q + Sbjct: 187 LGRQPR 192 Score = 33.5 bits (75), Expect = 0.55 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 ++ D T RSRGF F+ +A A +G + GR +RV+F Sbjct: 128 MVIDAQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDF 172
>YAG3_SCHPO (Q09868) Hypothetical RNA-binding protein C12G12.03 in chromosome I| Length = 576 Score = 46.2 bits (108), Expect = 8e-05 Identities = 23/63 (36%), Positives = 36/63 (57%) Frame = +3 Query: 354 DTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 533 D G RG F +FH+ ++AK +Q ++G E+ GR LR+ Q PPA + +QEK Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEWKRQLPPA-ERERVERGKQEK 326 Query: 534 NSL 542 ++ Sbjct: 327 RAV 329 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = +3 Query: 57 RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 RG AF + EEA VQ+ NG + GR +RV + Sbjct: 273 RGLAFANFHSPEEAKTVVQVLNGYEITGRRLRVEW 307
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 46.2 bits (108), Expect = 8e-05 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 407 T ++ NL + + L AF+ G V A+V + D + S GFGFV+F T Sbjct: 598 TSSLFVRNLNFSTTSQGLTDAFKHLDGFVQAKVKTKTDPKKPGQVLSMGFGFVAFRTKDQ 657 Query: 408 AKAALQAMDGVELDGRPL 461 A+AAL+ MDG LD + Sbjct: 658 AQAALKVMDGQVLDAHKI 675 Score = 45.1 bits (105), Expect = 2e-04 Identities = 36/141 (25%), Positives = 59/141 (41%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV T ++A A+++ +G +L + V + G Sbjct: 644 SMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISV---KASHRGLDAAEERRREDMAKKAA 700 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 + GT K+ NL + V ++T F LV R+ ++ SRGF F F T ++A Sbjct: 701 NQGT-KLVVKNLPFEVTKKEVRTLFSAYGKLVALRIP-KKFNQSSRGFAFAEFSTAKEAL 758 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A ++ + GR L + A Sbjct: 759 NAFNSLKDTHILGRRLVIDFA 779 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 39 KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 K SRGFAF +TA+EA A + GR + ++F + Sbjct: 738 KFNQSSRGFAFAEFSTAKEALNAFNSLKDTHILGRRLVIDFAQ 780
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 46.2 bits (108), Expect = 8e-05 Identities = 40/170 (23%), Positives = 63/170 (37%), Gaps = 18/170 (10%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQM-----FNGALL----------GGRTVRVNF 161 ++ RSRGF FV+ A ++ +A+ FNG +L +T V Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVE 115 Query: 162 PEVPRGGEXXXXXXXXXXXXXXXXDD---GTYKVYAGNLGWGVRADALKTAFEGQPGLVG 332 P E D G K+ N+ W R G+ G V Sbjct: 116 KSTPESSEKITGQNNEDEDDADGEDSMLKGKPKLIIRNMPWSCRDPVKLKKIFGRYGTVV 175 Query: 333 ARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 I + G+ GF FV+ I + + AL+ +++DGR + + A Q Sbjct: 176 EATIPRKRDGKLCGFAFVTMKKISNCRIALENTKDLKIDGRKVAVDFAVQ 225 Score = 38.1 bits (87), Expect = 0.022 Identities = 21/67 (31%), Positives = 32/67 (47%) Frame = +3 Query: 339 VIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQ 518 V+ + RSRGFGFVSF D K AL + +G LR+ +A + + T + Sbjct: 56 VVVKDTNKRSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAKRRDRSKKTSEVVE 115 Query: 519 SQQEKNS 539 ++S Sbjct: 116 KSTPESS 122
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 45.8 bits (107), Expect = 1e-04 Identities = 29/78 (37%), Positives = 38/78 (48%), Gaps = 5/78 (6%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 407 T ++ NL + + F+ G V AR+ + D R S GFGFV F T Sbjct: 596 TSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQ 655 Query: 408 AKAALQAMDGVELDGRPL 461 A+AAL AMDG +LD L Sbjct: 656 AQAALAAMDGYKLDQHEL 673 Score = 33.5 bits (75), Expect = 0.55 Identities = 36/143 (25%), Positives = 54/143 (37%), Gaps = 2/143 (1%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGR--TVRVNFPEVPRGGEXXXXXXXXXXXXXX 227 S GF FV T +A A+ +G L VR + + E Sbjct: 642 SMGFGFVDFRTKAQAQAALAAMDGYKLDQHELVVRASNKAMDAAEERRREDTAKKIAARR 701 Query: 228 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 407 K+ NL + +++ F L RV + D +RGFGF F + ++ Sbjct: 702 T------KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSARE 754 Query: 408 AKAALQAMDGVELDGRPLRLSLA 476 A+ A+ A+ L GR L L A Sbjct: 755 AENAMDALKNTHLLGRRLVLEFA 777
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 45.8 bits (107), Expect = 1e-04 Identities = 29/83 (34%), Positives = 39/83 (46%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 KVY GNL VR ++ F G + +GR F FV F +DA+ A++A Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKY----GRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRA 65 Query: 429 MDGVELDGRPLRLSLAAQNPPAG 497 DG E DGR +R+ P G Sbjct: 66 RDGYEFDGRRIRVEFTRGVGPRG 88
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/75 (34%), Positives = 39/75 (52%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G L V L AF + ++ + +T + RGF FV F +DA AA+ M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 432 DGVELDGRPLRLSLA 476 + EL GR +R++LA Sbjct: 68 NESELFGRTIRVNLA 82 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/47 (46%), Positives = 29/47 (61%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D T++ RGFAFV AE+AA A+ N + L GRT+RVN + R Sbjct: 40 DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 86
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 45.4 bits (106), Expect = 1e-04 Identities = 26/75 (34%), Positives = 39/75 (52%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G L V L AF + ++ + +T + RGF FV F +DA AA+ M Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67 Query: 432 DGVELDGRPLRLSLA 476 + EL GR +R++LA Sbjct: 68 NESELFGRTIRVNLA 82 Score = 42.4 bits (98), Expect = 0.001 Identities = 22/47 (46%), Positives = 29/47 (61%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D T++ RGFAFV AE+AA A+ N + L GRT+RVN + R Sbjct: 40 DYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 86
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 45.4 bits (106), Expect = 1e-04 Identities = 40/158 (25%), Positives = 64/158 (40%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++Y + T +S+G+ F + AA+A G LG RT+ V++ + G+ Sbjct: 163 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA---GQLTPALLH 219 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G V DAL A ++ +D G+ +GF + Sbjct: 220 SRCLCVDRLPPGFNDV-----------DALCRALSAVHSPTFCQLACGQD-GQLKGFAVL 267 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 + T + A+ A Q DG+ L G LR+S A PP S Sbjct: 268 EYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 305
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 45.1 bits (105), Expect = 2e-04 Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 2/143 (1%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV E+A KA++ G ++ G + V E Sbjct: 773 SMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISE-----RATKPAVTLARKKQVPR 827 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD-TGRSRGFGFVSFHTIQDA 410 T K+ N+ + + ++ F L R+ + TG RGFGFV F T QDA Sbjct: 828 KQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDA 887 Query: 411 KAALQAM-DGVELDGRPLRLSLA 476 K A A+ L GR L L A Sbjct: 888 KRAFNALCHSTHLYGRRLVLEWA 910 Score = 33.5 bits (75), Expect = 0.55 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 D +T + +GFAF+T E A KA +G + GR + V Sbjct: 436 DSLTKKPKGFAFITFMFPEHAVKAYSEVDGQVFQGRMLHV 475 Score = 30.8 bits (68), Expect = 3.6 Identities = 34/165 (20%), Positives = 60/165 (36%), Gaps = 7/165 (4%) Frame = +3 Query: 60 GFAFVTMATAEEAAKAVQMFNGALLGGRTVRV----NFPEVPRGGEXXXXXXXXXXXXXX 227 G+ FV + EE +A++ N +GGR + V N P + Sbjct: 334 GYIFVDFSNEEEVKQALKC-NREYMGGRYIEVFREKNVPTTKGAPKNTTKSWQGRILGEN 392 Query: 228 XXDDG---TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 398 ++ + +++ NL + + L+ F L + T + +GF F++F Sbjct: 393 EEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMF 452 Query: 399 IQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 533 + A A +DG GR L + + A S S K Sbjct: 453 PEHAVKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYK 497
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 45.1 bits (105), Expect = 2e-04 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHT 398 D+ ++ L + L+T PG ARV + D R S G+GFV F T Sbjct: 531 DEAGSTLFLKGLNFTTTTPHLQTVLSHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKT 590 Query: 399 IQDAKAALQAMDGVELDGRPLRLSLA 476 + A AL+A++G E+DG+ L + A Sbjct: 591 KEAATKALKALEGFEIDGKSLEVKFA 616 Score = 41.6 bits (96), Expect = 0.002 Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 5/146 (3%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S G+ FV T E A KA++ G + G+++ V F + RG E Sbjct: 580 SMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKFAQ--RGAEDDRETKKGGDAEGGKT 637 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARV---IFERDTGR--SRGFGFVSFHT 398 + KV NL + ++ F L R+ TG +RGF F+ F T Sbjct: 638 K--STKVLVKNLPFEATKKDVRELFSAYGQLKSLRLPRKAVPTSTGAQSTRGFAFLEFTT 695 Query: 399 IQDAKAALQAMDGVELDGRPLRLSLA 476 +A A++A+ L GR L L A Sbjct: 696 HTEAARAMEALKHTHLLGRHLVLQWA 721 Score = 36.6 bits (83), Expect = 0.065 Identities = 20/75 (26%), Positives = 36/75 (48%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T +++ NL + +++L + F + + + TG G F+ FH +DA AA Sbjct: 220 TSRLFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAY 279 Query: 423 QAMDGVELDGRPLRL 467 +A+D GR L + Sbjct: 280 KALDKTIFQGRLLHV 294 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Frame = +3 Query: 21 SXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGA-LLGGRTVRVNF 161 S I D R FAFV AEEA K + F+G GG V+V+F Sbjct: 52 STTITDTKLVPKRRFAFVGYKDAEEAQKVKEWFDGTYAFGGGKVKVDF 99
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 44.7 bits (104), Expect = 2e-04 Identities = 32/143 (22%), Positives = 61/143 (42%) Frame = +3 Query: 48 DRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXX 227 D + + FV M T ++ A+Q NG L ++V + R Sbjct: 37 DVVKNYGFVHMETEQQGRDAIQNLNGYTLNEFAIKVEAAKSRRAPNTP------------ 84 Query: 228 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 407 T K++ GNL RA ++ F+ +V ++ R +GFV + D Sbjct: 85 -----TTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RNYGFVHLDCVGD 131 Query: 408 AKAALQAMDGVELDGRPLRLSLA 476 + A++ ++G +DG+PL++ ++ Sbjct: 132 VQDAIKELNGRVVDGQPLKVQVS 154 Score = 41.2 bits (95), Expect = 0.003 Identities = 27/91 (29%), Positives = 48/91 (52%) Frame = +3 Query: 240 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 419 GT+K++ GNL +A L+ FE +V V+ + +GFV T Q + A Sbjct: 5 GTFKLFIGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDA 56 Query: 420 LQAMDGVELDGRPLRLSLAAQNPPAGSTPST 512 +Q ++G L+ +++ AA++ A +TP+T Sbjct: 57 IQNLNGYTLNEFAIKVE-AAKSRRAPNTPTT 86
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 44.7 bits (104), Expect = 2e-04 Identities = 31/102 (30%), Positives = 50/102 (49%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 DG +++ N+ + R LKT FE + G+V I + G S+GFGFV+ QDA+ Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFE-KFGVVSDVEIIFNERG-SKGFGFVTMERPQDAER 207 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 542 A Q + G ++GR + ++ A + T + N L Sbjct: 208 ARQELHGSMIEGRKIEVNCATARVHSKKVKPTGGILDQMNPL 249 Score = 35.8 bits (81), Expect = 0.11 Identities = 15/35 (42%), Positives = 24/35 (68%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 S+GF FVTM ++A +A Q +G+++ GR + VN Sbjct: 191 SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVN 225
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/97 (21%), Positives = 53/97 (54%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 VY G++ + + + ++ +++F+ TGRS+G+ F+ F ++ + +A++ + Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 542 +G +L R L+ ++ + +G + Q QQ+ N++ Sbjct: 80 NGYQLGSRFLKCGYSSNSDISG---VSQQQQQQYNNI 113 Score = 36.6 bits (83), Expect = 0.065 Identities = 16/45 (35%), Positives = 27/45 (60%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 +++D T RS+G+AF+ E +A AV+ NG LG R ++ + Sbjct: 49 MMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 93
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQDAKA 416 V+ NL + + L AF+ G + A+V + D+ S GFGFV F + + A+ Sbjct: 607 VFVKNLNFKTTSRVLTDAFKALDGFLVAQVKMKPDSKNKGKFLSMGFGFVEFSSKEAAEI 666 Query: 417 ALQAMDGVELDGRPLRLSLA 476 A +AMDG LDG L+L ++ Sbjct: 667 AQKAMDGHVLDGHKLQLKIS 686 Score = 37.4 bits (85), Expect = 0.038 Identities = 34/141 (24%), Positives = 56/141 (39%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV ++ E A A + +G +L G +++ + E Sbjct: 650 SMGFGFVEFSSKEAAEIAQKAMDGHVLDGHKLQLKISNRGQDEETTETKKAIDS------ 703 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 K+ NL + ++ F L RV ++ SRGF F + + ++A+ Sbjct: 704 -----KILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAE 757 Query: 414 AALQAMDGVELDGRPLRLSLA 476 A+ A+ G L GR L L A Sbjct: 758 HAMSALQGTHLLGRRLVLQYA 778 Score = 33.5 bits (75), Expect = 0.55 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T +++ NL + + + + F L + TG+ +GF V F ++A AA Sbjct: 300 TGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAY 359 Query: 423 QAMDGVELDGRPLRL 467 +A DG GR L + Sbjct: 360 EAQDGKIFQGRLLHI 374 Score = 30.4 bits (67), Expect = 4.6 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +3 Query: 39 KITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 K SRGFAF +A+EA A+ G L GR + + + + Sbjct: 737 KFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRLVLQYAQ 779
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 44.7 bits (104), Expect = 2e-04 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 9/93 (9%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L LK F G+ G + ++ + T +SRGF F++F DAK A + Sbjct: 9 KLFIGGLNRETNEKMLKAVF-GKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67 Query: 429 MDGVELDGRPLRLSLA---------AQNPPAGS 500 M+G L G+ +++ A + PPA S Sbjct: 68 MNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASS 100 Score = 36.2 bits (82), Expect = 0.085 Identities = 17/57 (29%), Positives = 28/57 (49%) Frame = +3 Query: 3 RHEATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVP 173 +H ++ T +SRGFAF+T +A A + NG L G+ ++V + P Sbjct: 30 KHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/69 (34%), Positives = 42/69 (60%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 74 RPH-KVDGR 81 Score = 40.0 bits (92), Expect = 0.006 Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 6/165 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXX 194 ++ D T RSRGF FVT AT EE A+ + GR V V+ + R G Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT 102 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 K++ G + L+ FE + ++ +R +G+ RG Sbjct: 103 ----------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 146 Query: 375 FGFVSF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGST 503 F FV+F H D K +Q V +R +L+ Q + S+ Sbjct: 147 FAFVTFDDHDSVD-KIVIQKYHTVNGHNCEVRKALSKQEMASASS 190
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/69 (34%), Positives = 42/69 (60%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 74 RPH-KVDGR 81 Score = 41.2 bits (95), Expect = 0.003 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 6/171 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXX 194 ++ D T RSRGF FVT AT EE A+ + GR V V+ + R G Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT 102 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 K++ G + L+ FE + ++ +R +G+ RG Sbjct: 103 ----------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 146 Query: 375 FGFVSF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 521 F FV+F H D K +Q V +R +L+ Q + S+ +S Sbjct: 147 FAFVTFDDHDSVD-KIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRS 196
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/69 (34%), Positives = 42/69 (60%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 74 RPH-KVDGR 81 Score = 40.8 bits (94), Expect = 0.003 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 6/171 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXX 194 ++ D T RSRGF FVT AT EE A+ + GR V V+ + R G Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT 102 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 K++ G + L+ FE + ++ +R +G+ RG Sbjct: 103 ----------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 146 Query: 375 FGFVSF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 521 F FV+F H D K +Q V +R +L Q + S+ +S Sbjct: 147 FAFVTFDDHDSVD-KIVIQKYHTVNGHNCEVRKALCKQEMASASSSQRGRS 196
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 44.3 bits (103), Expect = 3e-04 Identities = 24/69 (34%), Positives = 42/69 (60%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L++ FE L V+ + +T RSRGFGFV++ T+++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 73 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 74 RPH-KVDGR 81 Score = 41.2 bits (95), Expect = 0.003 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 6/171 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXX 194 ++ D T RSRGF FVT AT EE A+ + GR V V+ + R G Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT 102 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 K++ G + L+ FE + ++ +R +G+ RG Sbjct: 103 ----------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 146 Query: 375 FGFVSF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 521 F FV+F H D K +Q V +R +L+ Q + S+ +S Sbjct: 147 FAFVTFDDHDSVD-KIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRS 196
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 43.9 bits (102), Expect = 4e-04 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAAERA 68 Query: 429 MDGVE--LDGRPLRLSLA 476 +DGR ++LA Sbjct: 69 CKDPNPIIDGRKANVNLA 86 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 +I D+ T +SRG+ FVTMA A +A + N ++ GR VN Sbjct: 42 VITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVN 84
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 43.9 bits (102), Expect = 4e-04 Identities = 41/143 (28%), Positives = 54/143 (37%), Gaps = 2/143 (1%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 S GF FV E+A KA++ G + G + V E Sbjct: 765 SMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE-----RATKPALTSTRKKQVPK 819 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD-TGRSRGFGFVSFHTIQDA 410 T K+ N+ + ++ F L R+ + TG RGFGFV F T QDA Sbjct: 820 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 879 Query: 411 KAALQAM-DGVELDGRPLRLSLA 476 K A A+ L GR L L A Sbjct: 880 KKAFNALCHSTHLYGRRLVLEWA 902 Score = 33.9 bits (76), Expect = 0.42 Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 15/175 (8%) Frame = +3 Query: 60 GFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE----VPRGGEXXXXXXXXXXXXXX 227 G+ FV +++ EE KA++ N +GGR + V F E RG Sbjct: 333 GYVFVDLSSEEEVKKALKC-NRDYMGGRYIEV-FREKQAPTARGPPKSTTPWQGRTLGEN 390 Query: 228 XXDDG---TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHT 398 ++ + +++ NL + + L+ F L + T + +GF FV+F Sbjct: 391 EEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMF 450 Query: 399 IQDAKAALQAMDGVELDGRPLRL--------SLAAQNPPAGSTPSTAQSQQEKNS 539 + A A +DG GR L + + N P S ++ + NS Sbjct: 451 PEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKKKKEAMDKANS 505 Score = 33.5 bits (75), Expect = 0.55 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR---SRGFGFVSFHTIQDAKAAL 422 ++ NL + + LK F + + +++ S GFGFV + + A+ AL Sbjct: 724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 783 Query: 423 QAMDGVELDGRPL--RLSLAAQNPPAGST 503 + + G +DG L R+S A P ST Sbjct: 784 KQLQGHTVDGHKLEVRISERATKPALTST 812 Score = 33.5 bits (75), Expect = 0.55 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 D +T + +GFAFVT E A KA +G + GR + V Sbjct: 434 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473 Score = 30.0 bits (66), Expect = 6.1 Identities = 17/53 (32%), Positives = 29/53 (54%) Frame = +3 Query: 264 NLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 NL G++ + + F L + F +D G+ R FGF+ F + ++A+AAL Sbjct: 8 NLPNGMKEERFRQLFAAFGTLTDCSLKFTKD-GKFRKFGFIGFKSEEEAQAAL 59
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 2/78 (2%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + +L+ FEG + A VI +R TG+SRG+GFV T+ D AA +A Sbjct: 33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFV---TMADRAAADRA 89 Query: 429 MDGVE--LDGRPLRLSLA 476 +DGR ++LA Sbjct: 90 CKDPNPIIDGRKANVNLA 107 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/44 (40%), Positives = 26/44 (59%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 +I D+ T +SRG+ FVTMA A +A + N ++ GR VN Sbjct: 63 VITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVN 105
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 43.5 bits (101), Expect = 5e-04 Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 1/115 (0%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGA-LLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXX 227 RSRGF FVT A +Q NG L GRT+ P PR Sbjct: 46 RSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTIDPK-PCNPR-------------TLQK 89 Query: 228 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 392 G YKV+ G L V L+T F + ++++++ +SRGFGF+SF Sbjct: 90 PKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSF 144 Score = 41.2 bits (95), Expect = 0.003 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 4/79 (5%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 +D K++ G L W + L F ++ V+ ++GRSRGFGFV+F + Sbjct: 3 EDERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVN 62 Query: 414 AALQ----AMDGVELDGRP 458 LQ +DG +D +P Sbjct: 63 HVLQNGPHTLDGRTIDPKP 81
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 43.5 bits (101), Expect = 5e-04 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 2/140 (1%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXX 233 ++G+ FV ++ AA A+ + NG L+ NFP Sbjct: 105 NQGYCFVDFPSSTHAANAL-LKNGMLIP------NFPNKKLKLNWATSSYSNSNNSLNNV 157 Query: 234 DDGTY-KVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQD 407 G ++ G+L V L F + A+++ ++ TG S+G+GFV F + Sbjct: 158 KSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDE 217 Query: 408 AKAALQAMDGVELDGRPLRL 467 + AL M GV L+GR +++ Sbjct: 218 QQLALSEMQGVFLNGRAIKV 237
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 11/100 (11%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFE-----------GQPGLVGARVIFERDTGRSRGFG 380 D +Y L V D L F+ GQP + + +++TG+ +G Sbjct: 357 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMI---HIYLDKETGKPKGDA 413 Query: 381 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 VS+ AKAA++ DG + G L++SLA + PP S Sbjct: 414 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 453
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 43.5 bits (101), Expect = 5e-04 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 11/100 (11%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFE-----------GQPGLVGARVIFERDTGRSRGFG 380 D +Y L V D L F+ GQP + + +++TG+ +G Sbjct: 356 DSDNSAIYVQGLNDNVTLDDLADFFKQCGVVKMNKRTGQPMI---HIYLDKETGKPKGDA 412 Query: 381 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 VS+ AKAA++ DG + G L++SLA + PP S Sbjct: 413 TVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 452
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 43.1 bits (100), Expect = 7e-04 Identities = 24/69 (34%), Positives = 41/69 (59%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L++ FE L V+ + +T RSRGFGFV++ T++ AA+ A Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNA 73 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 74 RPH-KVDGR 81 Score = 40.0 bits (92), Expect = 0.006 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 6/171 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXX 194 ++ D T RSRGF FVT AT E+ A+ + GR V V+ + R G Sbjct: 44 VMRDPNTKRSRGFGFVTYATVEKVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLT 102 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 K++ G + L+ FE + ++ +R +G+ RG Sbjct: 103 ----------------VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 146 Query: 375 FGFVSF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQS 521 F FV+F H D K +Q V +R +L+ Q + S+ +S Sbjct: 147 FAFVTFDDHNSVD-KIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRS 196
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +V+ N+ + ++ A+K + G V +F+ G+SRG G V F + K AL+ Sbjct: 92 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 151 Query: 429 MDGVELDGRPLRL 467 M+ +L GRPL + Sbjct: 152 MNKYDLSGRPLNI 164 Score = 35.4 bits (80), Expect = 0.14 Identities = 20/75 (26%), Positives = 40/75 (53%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ NL + + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFESAESAEKACRI 572 Query: 429 MDGVELDGRPLRLSL 473 M+G+++ GR + + L Sbjct: 573 MNGIKISGREIDVRL 587 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ NL + V LK F G V I E G+SRG G V+F +A A+ Sbjct: 226 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284 Query: 432 DGVELDGRPLRLSLAAQNPP 491 +G L RP+ + + ++ P Sbjct: 285 NGQFLFDRPMHVKMDDKSVP 304 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 +SRG VT A EA +A+ MFNG L R + V + Sbjct: 262 KSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDD 300
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)| Length = 600 Score = 43.1 bits (100), Expect = 7e-04 Identities = 23/73 (31%), Positives = 39/73 (53%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +V+ N+ + ++ A+K + G V +F+ G+SRG G V F + K AL+ Sbjct: 101 RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALET 160 Query: 429 MDGVELDGRPLRL 467 M+ +L GRPL + Sbjct: 161 MNKYDLSGRPLNI 173 Score = 34.3 bits (77), Expect = 0.32 Identities = 20/75 (26%), Positives = 40/75 (53%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ NL + + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN--GKSKGCGTVRFDSPESAEKACRI 581 Query: 429 MDGVELDGRPLRLSL 473 M+G+++ GR + + L Sbjct: 582 MNGIKISGREIDVRL 596 Score = 33.9 bits (76), Expect = 0.42 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ NL + V LK F G V I E G+SRG G V+F +A A+ Sbjct: 235 IFVANLDFKVGWKKLKEVFS-IAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293 Query: 432 DGVELDGRPLRLSLAAQNPP 491 +G L RP+ + + ++ P Sbjct: 294 NGQFLFDRPMHVKMDDKSVP 313 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 +SRG VT A EA +A+ MFNG L R + V + Sbjct: 271 KSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDD 309
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXX 200 ++ D T RSRGF FVT A K + + L +T+ +V FP + Sbjct: 52 VMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL-DSKTIDPKVAFPRRAQPKMVTR-- 108 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 T K++ G L + +K FE + A ++F++ T R RGFG Sbjct: 109 --------------TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFG 154 Query: 381 FVSF 392 FV+F Sbjct: 155 FVTF 158 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 392 K++ G L W D+L+ F + V+ + T RSRGFGFV+F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic| region Length = 403 Score = 42.7 bits (99), Expect = 0.001 Identities = 31/139 (22%), Positives = 61/139 (43%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +++GF ++ E+ KAV + + L GR + + + E Sbjct: 181 KNKGFCYMFFKNVEQM-KAVLELSESHLNGRNMLI------KDSENYSGRPDKDDLVAMS 233 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDA 410 + + ++ GNL + V D L+ F+ +V R+ D+G+ +GF F+ F + + Sbjct: 234 KNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGS 293 Query: 411 KAALQAMDGVELDGRPLRL 467 L+ ++ GRPLR+ Sbjct: 294 TNELKDKSCRKIAGRPLRM 312
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 42.7 bits (99), Expect = 0.001 Identities = 24/75 (32%), Positives = 39/75 (52%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G L V L AF + ++ + ++ R RGF F+ + +DA AA+ M Sbjct: 8 IYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNM 67 Query: 432 DGVELDGRPLRLSLA 476 + EL GR +R++LA Sbjct: 68 NDSELCGRTIRVNLA 82 Score = 39.7 bits (91), Expect = 0.008 Identities = 20/47 (42%), Positives = 28/47 (59%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR 176 D + R RGFAF+ +E+AA A+ N + L GRT+RVN + R Sbjct: 40 DYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVR 86
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 42.7 bits (99), Expect = 0.001 Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXX 200 ++ D T RSRGF FVT A K + + L +T+ +V FP + Sbjct: 52 VMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHEL-DSKTIDPKVAFPRRAQPKMVTR-- 108 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 T K++ G L + +K FE + A ++F++ T R RGFG Sbjct: 109 --------------TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFG 154 Query: 381 FVSF 392 FV+F Sbjct: 155 FVTF 158 Score = 35.8 bits (81), Expect = 0.11 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF 392 K++ G L W D+L+ F + V+ + T RSRGFGFV+F Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTF 69
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.7 bits (99), Expect = 0.001 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXX 200 ++ D +T RSRGF FVT K + L +T+ +V FP + Sbjct: 51 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL-DSKTIDPKVAFPRRAQPKMVTR-- 107 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 T K++ G L + +K FE + A ++F++ T R RGFG Sbjct: 108 --------------TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFG 153 Query: 381 FVSFHT 398 FV+F + Sbjct: 154 FVTFES 159 Score = 33.1 bits (74), Expect = 0.72 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 392 K++ G L W + L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 42.4 bits (98), Expect = 0.001 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +3 Query: 336 RVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTP 506 +++ + T RSRGF F+ F + DA+ A A G+E+DGR +R+ + TP Sbjct: 135 QMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYSITQRAHTPTP 191 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 ++ D T RSRGF F+ +A A G + GR +RV++ Sbjct: 136 MVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDY 180
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 42.4 bits (98), Expect = 0.001 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K+ NL +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 106 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 164 Query: 429 MDGVELDGRPLRLSLA-----AQNPPAGS 500 +GV LDGRP+ + L AQ PA S Sbjct: 165 YNGVPLDGRPMNIQLVTSQIDAQRRPAQS 193
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.4 bits (98), Expect = 0.001 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXX 200 ++ D +T RSRGF FVT K + L +T+ +V FP + Sbjct: 51 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL-DSKTIDPKVAFPRRAQPKMVTR-- 107 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 T K++ G L + +K FE + A ++F++ T R RGFG Sbjct: 108 --------------TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG 153 Query: 381 FVSFHT 398 FV+F + Sbjct: 154 FVTFES 159 Score = 33.1 bits (74), Expect = 0.72 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 392 K++ G L W + L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 42.4 bits (98), Expect = 0.001 Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 2/126 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTV--RVNFPEVPRGGEXXXXX 200 ++ D +T RSRGF FVT K + L +T+ +V FP + Sbjct: 51 VMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHEL-DSKTIDPKVAFPRRAQPKMVTR-- 107 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 T K++ G L + +K FE + A ++F++ T R RGFG Sbjct: 108 --------------TKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFG 153 Query: 381 FVSFHT 398 FV+F + Sbjct: 154 FVTFES 159 Score = 33.1 bits (74), Expect = 0.72 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERD--TGRSRGFGFVSF 392 K++ G L W + L+ F GQ G V ++ RD T RSRGFGFV+F Sbjct: 21 KMFIGGLSWQTTQEGLREYF-GQFGEVKECLVM-RDPLTKRSRGFGFVTF 68
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 42.4 bits (98), Expect = 0.001 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L W LK F +V + + +TGRSRGFGF+ F +DA + + Sbjct: 69 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDAASVEKV 125 Query: 429 MDGVE--LDGR 455 +D E LDGR Sbjct: 126 LDQKEHRLDGR 136
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/96 (28%), Positives = 45/96 (46%) Frame = +3 Query: 168 VPRGGEXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIF 347 +PRGG + K++ G L + D+L+ FE L V+ Sbjct: 1 MPRGGMDDHWPSSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMR 60 Query: 348 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 455 + T RSRGFGFV++ +++ A++ A ++DGR Sbjct: 61 DPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGR 95
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 42.4 bits (98), Expect = 0.001 Identities = 27/96 (28%), Positives = 45/96 (46%) Frame = +3 Query: 168 VPRGGEXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIF 347 +PRGG + K++ G L + D+L+ FE L V+ Sbjct: 1 MPRGGMDDHWPSSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMR 60 Query: 348 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGR 455 + T RSRGFGFV++ +++ A++ A ++DGR Sbjct: 61 DPQTKRSRGFGFVTYSCVEEVDASMSARPH-KVDGR 95 Score = 39.3 bits (90), Expect = 0.010 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 6/164 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVR----VNFPEVPRGGEXXX 194 ++ D T RSRGF FVT + EE ++ + GR V V+ + R G Sbjct: 58 VMRDPQTKRSRGFGFVTYSCVEEVDASMSA-RPHKVDGRVVEPKRAVSREDSARPGAHLT 116 Query: 195 XXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 K++ G + L+ FEG + V+ +R +G+ RG Sbjct: 117 VK----------------KIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRG 160 Query: 375 FGFVSF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 F FV+F H D K +Q + L ++ +L+ Q S Sbjct: 161 FAFVTFDDHDTVD-KIVVQKYHTINLHNCEVKKALSKQEMQTAS 203
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 430 Score = 42.0 bits (97), Expect = 0.002 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 V+ GNL + V A++ F ++ R++ ++ TG +GFG+V F AL+ + Sbjct: 289 VFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALK-L 347 Query: 432 DGVELDGRPLRL 467 + EL GR LR+ Sbjct: 348 NNSELMGRKLRV 359
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 428 Score = 42.0 bits (97), Expect = 0.002 Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 7/164 (4%) Frame = +3 Query: 66 AFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDGT 245 A+V AAKA+Q + G +RV+ + Sbjct: 244 AYVVFKEERAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS----------------- 286 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 V+ GNL + V AL+ F +V R++ TG RGFG+V F AL+ Sbjct: 287 --VFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 344 Query: 426 AMDGVELDGRPLRL-------SLAAQNPPAGSTPSTAQSQQEKN 536 ++ EL GR LR+ L QN ++S+Q N Sbjct: 345 -LNNSELMGRKLRVMRSVNKEKLKQQNSNPSVKKDGSKSKQRLN 387
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/45 (37%), Positives = 30/45 (66%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 I+ D T++ +G+ FV+M +EAA A++ NG +G R ++V+F Sbjct: 433 IVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 477 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/77 (25%), Positives = 38/77 (49%) Frame = +3 Query: 240 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 419 G Y ++ NL AL F + +++ + T + +G+GFVS +A A Sbjct: 400 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 459 Query: 420 LQAMDGVELDGRPLRLS 470 ++A++G + R L++S Sbjct: 460 IRALNGYTMGNRVLQVS 476 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = +3 Query: 360 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 494 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 244
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 96 RPH-KVDGR 103
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 96 RPH-KVDGR 103
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L W LK F +V + + +TGRSRGFGF+ F +D+ + + Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILF---KDSSSVEKV 132 Query: 429 MDGVE--LDGR 455 +D E LDGR Sbjct: 133 LDQKEHRLDGR 143
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/69 (34%), Positives = 39/69 (56%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + D+L+ FE L V+ + T RSRGFGFV++ +++ AA+ A Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCA 95 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 96 RPH-KVDGR 103
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)| Length = 375 Score = 41.6 bits (96), Expect = 0.002 Identities = 35/134 (26%), Positives = 53/134 (39%) Frame = +3 Query: 66 AFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDDGT 245 A+V AAKA+Q + G +RV+ + Sbjct: 250 AYVVFKDESAAAKALQRNGAQIAEGFRIRVDLASETASRDKRS----------------- 292 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 V+ GNL + + AL+ F +V R++ TG RGFG+V F AL+ Sbjct: 293 --VFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALK 350 Query: 426 AMDGVELDGRPLRL 467 ++ EL GR LR+ Sbjct: 351 -LNNSELMGRKLRV 363
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 41.6 bits (96), Expect = 0.002 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 2/146 (1%) Frame = +3 Query: 36 DKITDRS--RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXX 209 D IT + RG V E A+ F+GAL R + V P Sbjct: 152 DIITSKGHHRGMGTVEFTKNESVQDAISKFDGALFMDRKLMVRQDNPPPEAAKEFSKKAT 211 Query: 210 XXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVS 389 D ++V+ NL + + +LK F+ ++ A V + + G SRGFG V Sbjct: 212 REEI-----DNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVI 265 Query: 390 FHTIQDAKAALQAMDGVELDGRPLRL 467 + T + A+ +G+E++GR L + Sbjct: 266 YPTEDEMIRAIDTFNGMEVEGRVLEV 291
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 41.6 bits (96), Expect = 0.002 Identities = 17/45 (37%), Positives = 30/45 (66%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 I+ D T++ +G+ FV+M +EAA A++ NG +G R ++V+F Sbjct: 469 IVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSF 513 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/77 (25%), Positives = 38/77 (49%) Frame = +3 Query: 240 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 419 G Y ++ NL AL F + +++ + T + +G+GFVS +A A Sbjct: 436 GAYPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMA 495 Query: 420 LQAMDGVELDGRPLRLS 470 ++A++G + R L++S Sbjct: 496 IRALNGYTMGNRVLQVS 512 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = +3 Query: 360 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPA 494 G+S G+GFV++ QDA+ A+ ++G+ L + +++S A + A Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDA 280
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 41.2 bits (95), Expect = 0.003 Identities = 39/158 (24%), Positives = 63/158 (39%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++Y + T S+G+ F + AA+A G LG RT+ V++ + G+ Sbjct: 163 LVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA---GQLTPALLH 219 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 G V DAL+ A ++ +D G+ +GF + Sbjct: 220 SRCLCVDHLPPGFSDV-----------DALRRALSVVYTPTFCQLACGQD-GQLKGFAVL 267 Query: 387 SFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGS 500 + T + A+AA + DG L LR+S A PP S Sbjct: 268 EYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRS 305
>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) Length = 931 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Frame = +3 Query: 255 YAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD 434 + L RA LK F +VGA+V+ + +R +GFV+ T ++A + + Sbjct: 431 WVSGLSSTTRATDLKNLFSRYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 490 Query: 435 GVELDGRPLRLSLAAQNPPAGSTPS--TAQSQQEKNS 539 EL G+ + + A P P S++EK S Sbjct: 491 KTELHGKMISVEKAKSEPAGKRVPDRRDGDSKKEKTS 527 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 +R + FVTM+TAEEA K + + L G+ + V Sbjct: 468 ARCYGFVTMSTAEEATKCINHLHKTELHGKMISV 501
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 40.8 bits (94), Expect = 0.003 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Frame = +3 Query: 9 EATMSXIIYDKITDRS--RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 E + I+Y D++ RGFAFV E+ +A M LL GR P Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY----ESHRAAAMARRKLLPGRIQLWGHPIAVDWA 216 Query: 183 EXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDT 359 E +Y NL + ++ F +PG V ER Sbjct: 217 EPEVEVDEDTMSSVKI-------LYVRNLMLSTSEEMIEKEFNNIKPGAV------ER-V 262 Query: 360 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 + R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 263 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 40.8 bits (94), Expect = 0.003 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Frame = +3 Query: 9 EATMSXIIYDKITDRS--RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 E + I+Y D++ RGFAFV E+ +A M LL GR P Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY----ESHRAAAMARRRLLPGRIQLWGHPIAVDWA 216 Query: 183 EXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDT 359 E +Y NL + ++ F +PG V ER Sbjct: 217 EPEVEVDEDTMSSVKI-------LYVRNLMLSTSEEMIEKEFNSIKPGAV------ER-V 262 Query: 360 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 + R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 263 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 40.8 bits (94), Expect = 0.003 Identities = 27/75 (36%), Positives = 39/75 (52%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K+ NL +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 105 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQ 163 Query: 429 MDGVELDGRPLRLSL 473 +GV LDGRP+ + L Sbjct: 164 YNGVPLDGRPMNIQL 178
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/91 (24%), Positives = 49/91 (53%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ GN+ V + ++ F+ + ++++R+TG +G+G++ F + + ALQ + Sbjct: 66 IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ-L 124 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 +G EL G+ + +S N P + +Q+Q Sbjct: 125 NGGELKGKKIAVSRKRTNIPGFNRHYNSQNQ 155
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 40.8 bits (94), Expect = 0.003 Identities = 28/77 (36%), Positives = 39/77 (50%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K+ NL +GV ++ F L A V ++R +GRS G V F DA A++ Sbjct: 76 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQ 134 Query: 429 MDGVELDGRPLRLSLAA 479 GV LDGRP+ + L A Sbjct: 135 YKGVPLDGRPMDIQLVA 151
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 40.8 bits (94), Expect = 0.003 Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 3/159 (1%) Frame = +3 Query: 9 EATMSXIIYDKITDRS--RGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGG 182 E + I+Y D++ RGFAFV E+ +A M LL GR P Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEY----ESHRAAAMARRRLLPGRIQLWGHPIAVDWA 216 Query: 183 EXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIFERDT 359 E +Y NL + ++ F +PG V ER Sbjct: 217 EPEVEVDEDTMSSVKI-------LYVRNLMLSTSEEMIEKEFNSIKPGAV------ER-V 262 Query: 360 GRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 + R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 263 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/84 (25%), Positives = 42/84 (50%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y GN+ +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 432 DGVELDGRPLRLSLAAQNPPAGST 503 D GR +++ N P ST Sbjct: 232 DESLFRGRQIKVIPKRTNRPGIST 255
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA-binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 305 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/84 (25%), Positives = 42/84 (50%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y GN+ +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 173 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 231 Query: 432 DGVELDGRPLRLSLAAQNPPAGST 503 D GR +++ N P ST Sbjct: 232 DESLFRGRQIKVIPKRTNRPGIST 255
>SAFB2_HUMAN (Q14151) Scaffold attachment factor B2| Length = 953 Score = 40.4 bits (93), Expect = 0.004 Identities = 27/94 (28%), Positives = 44/94 (46%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ L RA LK F +VGA+V+ + +R +GFV+ T +A + + Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 468 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEK 533 EL GR + + A+N PAG S + + K Sbjct: 469 HRTELHGRMISVE-KAKNEPAGKKLSDRKECEVK 501
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PolyA binding protein II) (PABII) (Polyadenylate-binding nuclear protein 1) (Nuclear poly(A)-binding protein 1) Length = 301 Score = 40.4 bits (93), Expect = 0.004 Identities = 21/84 (25%), Positives = 42/84 (50%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y GN+ +G A+ L+ F G + ++ ++ +G +GF ++ F + + +L A+ Sbjct: 169 IYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-AL 227 Query: 432 DGVELDGRPLRLSLAAQNPPAGST 503 D GR +++ N P ST Sbjct: 228 DESLFRGRQIKVIPKRTNRPGIST 251
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 749 Score = 40.4 bits (93), Expect = 0.004 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 11/180 (6%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEE---AAKAVQMFNGALLGGRTVRV---NFPEVPRGGEX 188 ++ +K + RGF +VT + E+ A K + F G + + N + R E Sbjct: 34 VVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKIDVTVAKKKLRNKSKETRKNEN 93 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 D ++ NL + D LK F G V I ++ G+ Sbjct: 94 AESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFT-HYGTVLEVNIPKKPDGKM 152 Query: 369 RGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAA-----QNPPAGSTPSTAQSQQEK 533 RGF FV F + +A AL+ + E+ GR + + A ++ S P +S K Sbjct: 153 RGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRK 212 Score = 38.9 bits (89), Expect = 0.013 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 V+ NL + +AL + L RV+ DT S+G F F T + A+ L A Sbjct: 326 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAA 385 Query: 432 D------GVELDGRPLRLSLAAQNPPA 494 G++LDGR L++ LA A Sbjct: 386 SPEAEGGGLKLDGRQLKVDLAVTRDEA 412 Score = 34.7 bits (78), Expect = 0.25 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ-- 425 ++ G L R+D L+ F + V+ E+ + RGFG+V+F ++D + AL+ Sbjct: 5 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEI 64 Query: 426 -AMDGVELD 449 +G ++D Sbjct: 65 TTFEGCKID 73 Score = 30.4 bits (67), Expect = 4.6 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +3 Query: 6 HEATMSXIIYDKITD-RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNF 161 H T+ + K D + RGFAFV EA KA++ N + GRTV V++ Sbjct: 135 HYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAVDW 187
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24| Length = 369 Score = 40.0 bits (92), Expect = 0.006 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 1/126 (0%) Frame = +3 Query: 51 RSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXX 230 +++GFA+V AT + A+Q AL G + + + Sbjct: 163 QNKGFAYVDFATEDALKLALQCSEKALNGRNILIKSNTDFSGRPSKPANTLSKTASIQSS 222 Query: 231 XDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVG-ARVIFERDTGRSRGFGFVSFHTIQD 407 + + ++ GNL + LK F GQ G + R++ DTG+ +GFGFV F I Sbjct: 223 KKEPSSILFVGNLDFETTDADLKEHF-GQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDT 281 Query: 408 AKAALQ 425 A++ Sbjct: 282 CMKAME 287
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL-- 422 K++ G L W + L++ F +V ++ ++ T +SRGFGFV F L Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 423 --QAMDGVELDGRP 458 +DG +D +P Sbjct: 71 RPHTLDGRNIDPKP 84 Score = 37.4 bits (85), Expect = 0.038 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 1/168 (0%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ DK T++SRGF FV V L GR + P PRG + Sbjct: 41 IMKDKTTNQSRGFGFVKFKDPN-CVGTVLASRPHTLDGRNIDPK-PCTPRGMQPERTRPK 98 Query: 207 XXXXXXXXXDDG-TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 383 D + K++ G + L+ F+ + +I++ + R RGFGF Sbjct: 99 EGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158 Query: 384 VSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 ++F Q A+ M ++ G+ + + A P + Q Sbjct: 159 ITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQ 205
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL-- 422 K++ G L W + L++ F +V ++ ++ T +SRGFGFV F L Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 423 --QAMDGVELDGRP 458 +DG +D +P Sbjct: 71 RPHTLDGRNIDPKP 84 Score = 37.7 bits (86), Expect = 0.029 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 1/168 (0%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 I+ DK T++SRGF FV V L GR + P PRG + Sbjct: 41 IMKDKTTNQSRGFGFVKFKDPN-CVGTVLASRPHTLDGRNIDPK-PCTPRGMQPERTRPK 98 Query: 207 XXXXXXXXXDDG-TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 383 D+ + K++ G + L+ F+ + +I++ + R RGFGF Sbjct: 99 EGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGF 158 Query: 384 VSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 ++F Q A+ M ++ G+ + + A P + Q Sbjct: 159 ITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQ 205
>SAFB1_HUMAN (Q15424) Scaffold attachment factor B (Scaffold attachment factor| B1) (SAF-B) (HSP27 estrogen response element-TATA box-binding protein) (HSP27 ERE-TATA-binding protein) Length = 915 Score = 40.0 bits (92), Expect = 0.006 Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Frame = +3 Query: 255 YAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMD 434 + L RA LK F +VGA+V+ + +R +GFV+ T ++A + + Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468 Query: 435 GVELDGRPLRLSLAAQNPPAGSTPS---TAQSQQEKNS 539 EL G+ + + A+N P G S + ++EK+S Sbjct: 469 KTELHGKMISVE-KAKNEPVGKKTSDKRDSDGKKEKSS 505 Score = 30.4 bits (67), Expect = 4.6 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRV 155 +R + FVTM+TAEEA K + + L G+ + V Sbjct: 446 ARCYGFVTMSTAEEATKCINHLHKTELHGKMISV 479
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.0 bits (92), Expect = 0.006 Identities = 41/169 (24%), Positives = 63/169 (37%), Gaps = 2/169 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRG--GEXXXXX 200 I+ DK T++SRGF FV V L GR + P PRG E Sbjct: 41 IMKDKTTNQSRGFGFVKFKDPN-CVGTVLASRPHTLDGRNIDPK-PCTPRGMQPERSRPR 98 Query: 201 XXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFG 380 + + K++ G + LK F + +I++ + R RGFG Sbjct: 99 EGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFG 158 Query: 381 FVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQ 527 F++F Q A+ M ++ G+ + + A TP S Q Sbjct: 159 FITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQ 206 Score = 40.0 bits (92), Expect = 0.006 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL-- 422 K++ G L W + L++ F +V ++ ++ T +SRGFGFV F L Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70 Query: 423 --QAMDGVELDGRP 458 +DG +D +P Sbjct: 71 RPHTLDGRNIDPKP 84
>RBP56_HUMAN (Q92804) TATA-binding protein-associated factor 2N (RNA-binding| protein 56) (TAFII68) (TAF(II)68) Length = 592 Score = 40.0 bits (92), Expect = 0.006 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 9/88 (10%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGAR---------VIFERDTGRSRGFGFVSFHTIQ 404 ++ LG GV D + F+ Q G++ + ++DTG+ +G VSF Sbjct: 236 IFVQGLGEGVSTDQVGEFFK-QIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPP 294 Query: 405 DAKAALQAMDGVELDGRPLRLSLAAQNP 488 AKAA+ DG E G +++S A + P Sbjct: 295 SAKAAIDWFDGKEFHGNIIKVSFATRRP 322
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 39.7 bits (91), Expect = 0.008 Identities = 18/50 (36%), Positives = 33/50 (66%) Frame = +3 Query: 324 LVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSL 473 +V A+V ++ T S+ FGFVS+ A+AA+Q+M+G ++ + L++ L Sbjct: 427 VVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 476
>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7| Length = 267 Score = 39.7 bits (91), Expect = 0.008 Identities = 27/84 (32%), Positives = 38/84 (45%) Frame = +3 Query: 237 DGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKA 416 D KVY GNLG G L+ AF L + GF FV F +DA+ Sbjct: 37 DSETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAED 91 Query: 417 ALQAMDGVELDGRPLRLSLAAQNP 488 A++ +DG + G +R+ L+ P Sbjct: 92 AVRGLDGKVICGSRVRVELSTGMP 115
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor| 9G8) Length = 238 Score = 39.7 bits (91), Expect = 0.008 Identities = 27/83 (32%), Positives = 38/83 (45%) Frame = +3 Query: 240 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 419 G KVY GNLG G L+ AF L + GF FV F +DA+ A Sbjct: 9 GETKVYVGNLGTGAGKGELERAFSYYGPLRTVWI-----ARNPPGFAFVEFEDPRDAEDA 63 Query: 420 LQAMDGVELDGRPLRLSLAAQNP 488 ++ +DG + G +R+ L+ P Sbjct: 64 VRGLDGKVICGSRVRVELSTGMP 86
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 39.7 bits (91), Expect = 0.008 Identities = 34/128 (26%), Positives = 53/128 (41%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEX 188 E T ++ D T RSRGF FVT + E A++ ++ G+TV VPR + Sbjct: 48 EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ-RPHIIDGKTVDPK-RAVPRDDKN 105 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 T ++Y + D L F + + +I ++ T + Sbjct: 106 RSESNVS-----------TKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 154 Query: 369 RGFGFVSF 392 RGFGFV+F Sbjct: 155 RGFGFVTF 162 Score = 32.7 bits (73), Expect = 0.94 Identities = 24/99 (24%), Positives = 44/99 (44%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L D ++ + + V+ + T RSRGFGFV+F + AA++ Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83 Query: 429 MDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLT 545 + +DG+ + P + P +++ E N T Sbjct: 84 RPHI-IDGKTV--------DPKRAVPRDDKNRSESNVST 113
>SAFB2_MOUSE (Q80YR5) Scaffold attachment factor B2| Length = 991 Score = 39.7 bits (91), Expect = 0.008 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ L RA LK+ F ++GA+V+ + +R +GFV+ T +A + + Sbjct: 453 LWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCISHL 512 Query: 432 DGVELDGRPLRLSLAAQNP-PAGSTPSTAQSQQEK 533 EL GR + + A P S+ A Q+EK Sbjct: 513 HRTELHGRMISVEKAKNEPSEKKSSDRRACDQKEK 547
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 39.7 bits (91), Expect = 0.008 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 7/163 (4%) Frame = +3 Query: 9 EATMSXIIYDKITDRS--RGFAFVTMATAEEAAKAVQ-MFNGAL-LGGRTVRVNF--PEV 170 E + I+Y D++ RGFAFV + AA A + + G + L G + V++ PEV Sbjct: 161 EGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEV 220 Query: 171 PRGGEXXXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEG-QPGLVGARVIF 347 + +Y NL + ++ F +PG V Sbjct: 221 EVDEDTMSSVKI---------------LYVRNLMLSTSEEMIEKEFNNIKPGAV------ 259 Query: 348 ERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 ER + R + FV F +DA A++A++G LDG P+ ++LA Sbjct: 260 ER-VKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 39.7 bits (91), Expect = 0.008 Identities = 28/97 (28%), Positives = 46/97 (47%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 V+ NL + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 204 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGIVTFEQSIEAVQAISMF 262 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 542 +G L RP+ + + + P G + QQ + L Sbjct: 263 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 299 Score = 36.2 bits (82), Expect = 0.085 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRG 179 I+ DK +SRG VT + EA +A+ MFNG LL R + V E +P+G Sbjct: 233 ILEDK-DGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 284 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/74 (27%), Positives = 36/74 (48%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y+ + N+ + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 69 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 128 Query: 426 AMDGVELDGRPLRL 467 ++ L GRPL++ Sbjct: 129 VLNKHSLSGRPLKV 142 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ NL + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 652 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 709 Query: 429 MDGVELDGRPL 461 M+G++L GR + Sbjct: 710 MNGMKLSGREI 720
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 39.3 bits (90), Expect = 0.010 Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGR-----SRGFGFVSFHTIQD 407 T ++ NL + +L AF G V AR+ + D S GFGF F T Sbjct: 591 TATLFIKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQ 650 Query: 408 AKAALQAMDGVELDGRPL 461 A+AAL M+G LD L Sbjct: 651 AQAALAVMNGYTLDRHTL 668 Score = 37.4 bits (85), Expect = 0.038 Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 2/143 (1%) Frame = +3 Query: 54 SRGFAFVTMATAEEAAKAVQMFNGALLGGRT--VRVNFPEVPRGGEXXXXXXXXXXXXXX 227 S GF F T +A A+ + NG L T VR + + E Sbjct: 637 SMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDTAKKIAARR 696 Query: 228 XXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQD 407 K+ NL + +++ F L RV + D +RGFGF F + ++ Sbjct: 697 T------KIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDRS-ARGFGFADFVSARE 749 Query: 408 AKAALQAMDGVELDGRPLRLSLA 476 A+ A+ A+ L GR L L A Sbjct: 750 AENAMDALKNTHLLGRRLVLEFA 772 Score = 30.0 bits (66), Expect = 6.1 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ NL + + L+ F + V F+ S+GF +V + A A + Sbjct: 296 RLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRN 355 Query: 429 MDGVELDGRPLRLSLAAQ 482 +DG GR L + A+Q Sbjct: 356 LDGKIFQGRLLHILPASQ 373
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = +3 Query: 312 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 311 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 364
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = +3 Query: 312 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 304 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 357
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 39.3 bits (90), Expect = 0.010 Identities = 21/57 (36%), Positives = 32/57 (56%) Frame = +3 Query: 312 GQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 GQP + + +R+TG+ +G VSF AKAA+ DG E G P+++S A + Sbjct: 318 GQPMI---NLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATR 371
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 69 Query: 429 MDGVELDGRPLRLSLAAQNPPAG 497 +DGR + A +G Sbjct: 70 RPH-SIDGRVVEPKRAVAREESG 91 Score = 37.0 bits (84), Expect = 0.050 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ D + RSRGF FVT ++ E A+ ++ G RV P+ E Sbjct: 40 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG----RVVEPKRAVAREESGKPGA 95 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 K++ G + L+ FE + +I +R +G+ RGFGFV Sbjct: 96 HVTVK---------KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 146 Query: 387 SF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 +F H D K LQ + +R +L+ Q Sbjct: 147 TFDDHDPVD-KIVLQKYHTINGHNAEVRKALSRQ 179
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 38.9 bits (89), Expect = 0.013 Identities = 24/83 (28%), Positives = 42/83 (50%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L+ +E L V+ + + RSRGFGFV+F ++ + AA+ A Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA 81 Query: 429 MDGVELDGRPLRLSLAAQNPPAG 497 +DGR + A +G Sbjct: 82 RPH-SIDGRVVEPKRAVAREESG 103 Score = 37.0 bits (84), Expect = 0.050 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 2/154 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ D + RSRGF FVT ++ E A+ ++ G RV P+ E Sbjct: 52 VMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDG----RVVEPKRAVAREESGKPGA 107 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 K++ G + L+ FE + +I +R +G+ RGFGFV Sbjct: 108 HVTVK---------KLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFV 158 Query: 387 SF--HTIQDAKAALQAMDGVELDGRPLRLSLAAQ 482 +F H D K LQ + +R +L+ Q Sbjct: 159 TFDDHDPVD-KIVLQKYHTINGHNAEVRKALSRQ 191
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog| Length = 342 Score = 38.9 bits (89), Expect = 0.013 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-A 416 K++ G L + ++LK FE +V V+ + T RSRGFGF+++ H + DA+ A Sbjct: 18 KLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNA 77 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGST 503 +DG ++ + P AG+T Sbjct: 78 RPHKVDGRVVEPKRAVPRTEIGRPEAGAT 106
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 38.9 bits (89), Expect = 0.013 Identities = 28/97 (28%), Positives = 46/97 (47%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 V+ NL + V LK F +V A ++ ++D G+SRG G V+F +A A+ Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMF 263 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSL 542 +G L RP+ + + + P G + QQ + L Sbjct: 264 NGQLLFDRPMHVKMDERALPKGDFFPPERPQQLPHGL 300 Score = 35.4 bits (80), Expect = 0.14 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE--VPRG 179 I+ DK +SRG VT + EA +A+ MFNG LL R + V E +P+G Sbjct: 234 ILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKG 285 Score = 34.7 bits (78), Expect = 0.25 Identities = 20/74 (27%), Positives = 36/74 (48%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y+ + N+ + V+ +LK + + G V + G+SRG V F + K A + Sbjct: 70 YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAAE 129 Query: 426 AMDGVELDGRPLRL 467 ++ L GRPL++ Sbjct: 130 VLNKHSLSGRPLKV 143 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ NL + LK F ++ A + E G+S+G G V F + + A+ A + Sbjct: 653 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN--GKSKGCGVVKFESPEVAERACRM 710 Query: 429 MDGVELDGRPL 461 M+G++L GR + Sbjct: 711 MNGMKLSGREI 721
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1| protein) (Protein P11) Length = 385 Score = 38.5 bits (88), Expect = 0.017 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 1/154 (0%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ D T RSRGF F+T + + A Q + GRTV VPR Sbjct: 55 VMKDPKTKRSRGFGFITYSQSYMIDNA-QNARPHKIDGRTVEPK-RAVPRQEIDSPNAGA 112 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 K++ G L + L+ F+ +V ++ ++DTG+ RGF F+ Sbjct: 113 TVK-----------KLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161 Query: 387 SFHTIQDA-KAALQAMDGVELDGRPLRLSLAAQN 485 F K LQ ++ ++ ++A Q+ Sbjct: 162 EFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQD 195 Score = 38.1 bits (87), Expect = 0.022 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSF---HTIQDAK-A 416 K++ G L + D LK FE +V V+ + T RSRGFGF+++ + I +A+ A Sbjct: 25 KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNA 84 Query: 417 ALQAMDGVELDGRPLRLSLAAQNPPAGST 503 +DG ++ + +P AG+T Sbjct: 85 RPHKIDGRTVEPKRAVPRQEIDSPNAGAT 113
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 38.5 bits (88), Expect = 0.017 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 1/146 (0%) Frame = +3 Query: 63 FAFVTMATAEEAAKAVQMFNG-ALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDD 239 FAFV M A +A++ +G L GR + V PR Sbjct: 37 FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR-PR-------------------PL 76 Query: 240 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 419 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA Sbjct: 77 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAA 128 Query: 420 LQAMDGVELDGRPLRLSLAAQNPPAG 497 + ++G E+ G+ + + L+ + G Sbjct: 129 IAQLNGKEVKGKRINVELSTKGQKKG 154
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 38.5 bits (88), Expect = 0.017 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 1/146 (0%) Frame = +3 Query: 63 FAFVTMATAEEAAKAVQMFNG-ALLGGRTVRVNFPEVPRGGEXXXXXXXXXXXXXXXXDD 239 FAFV M A +A++ +G L GR + V PR Sbjct: 37 FAFVHMRENAGAVRAIEALHGHELRPGRALVVEMSR-PR-------------------PL 76 Query: 240 GTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAA 419 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA Sbjct: 77 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAA 128 Query: 420 LQAMDGVELDGRPLRLSLAAQNPPAG 497 + ++G E+ G+ + + L+ + G Sbjct: 129 IAQLNGKEVKGKRINVELSTKGQKKG 154
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 38.5 bits (88), Expect = 0.017 Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 6/174 (3%) Frame = +3 Query: 33 YDKI--TDRSRGFAFVTMATAEEAAKAVQMFNGALLG--GRTVRVNFPEVPRGGEXXXXX 200 Y K+ D GFAFV M +A A++ + G GR +RV + + RGG+ Sbjct: 25 YGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGG 84 Query: 201 XXXXXXXXXXXDDGTYKVY--AGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRG 374 + + A N R L+ FE +V R+ R Sbjct: 85 GSRRSSSSMRPSKTLFVINFDADN----TRTRDLEKHFEPYGKIVNVRI--------RRN 132 Query: 375 FGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKN 536 F F+ + +DA AL A + +L + + + A ++ A + + +++++ Sbjct: 133 FAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNGHSPERRRDRS 186
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 38.1 bits (87), Expect = 0.022 Identities = 18/41 (43%), Positives = 25/41 (60%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 D T++ RGFAFV E+A A+ N + + GRT+RVN Sbjct: 4 DYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVN 44 Score = 37.4 bits (85), Expect = 0.038 Identities = 16/40 (40%), Positives = 27/40 (67%) Frame = +3 Query: 357 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRLSLA 476 T + RGF FV F ++DA +A+ M+ E+ GR +R+++A Sbjct: 7 TEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 38.1 bits (87), Expect = 0.022 Identities = 37/159 (23%), Positives = 61/159 (38%), Gaps = 1/159 (0%) Frame = +3 Query: 9 EATMSXIIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEX 188 + T ++ D + RSRGF FVT + E A+ + G RV P+ E Sbjct: 34 QLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDG----RVVEPKRAVAREE 89 Query: 189 XXXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRS 368 K++ G + L+ FE + +I ++ +G+ Sbjct: 90 SAKPGAHVTVK---------KLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKK 140 Query: 369 RGFGFVSFHTIQDA-KAALQAMDGVELDGRPLRLSLAAQ 482 RGFGFV+F+ K LQ + +R +L+ Q Sbjct: 141 RGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSKQ 179 Score = 38.1 bits (87), Expect = 0.022 Identities = 22/69 (31%), Positives = 37/69 (53%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L+ +E L V+ + + RSRGFGFV+F + + AA+ A Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSA 69 Query: 429 MDGVELDGR 455 +DGR Sbjct: 70 RPHT-IDGR 77
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/85 (23%), Positives = 42/85 (49%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA+ Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAI 129 Query: 423 QAMDGVELDGRPLRLSLAAQNPPAG 497 ++G E+ G+ + + L+ + G Sbjct: 130 AQLNGKEVKGKRINVELSTKGQKKG 154
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 38.1 bits (87), Expect = 0.022 Identities = 20/85 (23%), Positives = 42/85 (49%) Frame = +3 Query: 243 TYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAAL 422 T+K++ GN+ + L++ FE + ++ V+ + + FV DAKAA+ Sbjct: 78 TWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAI 129 Query: 423 QAMDGVELDGRPLRLSLAAQNPPAG 497 ++G E+ G+ + + L+ + G Sbjct: 130 AQLNGKEVKGKRINVELSTKGQKKG 154
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 37.7 bits (86), Expect = 0.029 Identities = 17/79 (21%), Positives = 38/79 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 V+ GN+ + V + F + +++ + +TG +G+GF F + A++ + Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68 Query: 432 DGVELDGRPLRLSLAAQNP 488 + EL R +R+ + +P Sbjct: 69 NNSELGPRKIRVEFPSNDP 87 Score = 34.7 bits (78), Expect = 0.25 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFP 164 ++ D T +G+ F +E A AV+ N + LG R +RV FP Sbjct: 38 LVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEFP 83
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein homolog) Length = 247 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y Y GNL + + F+ + R++ ++DT + +GF +V F + K AL Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 426 AMDGVELDGRPLRLSLA 476 DG L R LR+ +A Sbjct: 99 TYDGALLGDRSLRVDIA 115 Score = 35.4 bits (80), Expect = 0.14 Identities = 17/47 (36%), Positives = 30/47 (63%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 ++ DK TD+ +GF +V + +A+ ++GALLG R++RV+ E Sbjct: 71 LVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 116
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)| (Williams-Beuren syndrome chromosome region 1 protein) Length = 247 Score = 37.7 bits (86), Expect = 0.029 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 Y Y GNL + + F+ + R++ ++DT + +GF +V F + K AL Sbjct: 41 YTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL- 98 Query: 426 AMDGVELDGRPLRLSLA 476 DG L R LR+ +A Sbjct: 99 TYDGALLGDRSLRVDIA 115 Score = 35.4 bits (80), Expect = 0.14 Identities = 17/47 (36%), Positives = 30/47 (63%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPE 167 ++ DK TD+ +GF +V + +A+ ++GALLG R++RV+ E Sbjct: 71 LVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 116
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 37.7 bits (86), Expect = 0.029 Identities = 24/76 (31%), Positives = 36/76 (47%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L L+ FE L V+ T RSR FGFV++ +++A AA+ A Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAA 67 Query: 429 MDGVELDGRPLRLSLA 476 +DG + L A Sbjct: 68 SPHA-VDGNTVELKRA 82 Score = 36.2 bits (82), Expect = 0.085 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 2/135 (1%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ + T RSR F FVT + EEA A+ A+ G N E+ R Sbjct: 38 VVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDG------NTVELKRAVSREDSARP 91 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 K++ G L V L F + A +I ++ +G+ RGFGFV Sbjct: 92 GAHAKVK-------KLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFV 144 Query: 387 SF--HTIQDAKAALQ 425 F H D A ++ Sbjct: 145 YFQNHDAADKAAVVK 159
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 37.7 bits (86), Expect = 0.029 Identities = 22/71 (30%), Positives = 37/71 (52%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 +Y G+L G+ LK+ FE ++ RV + TG S+G+GFV F + AK + M Sbjct: 47 LYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETM 106 Query: 432 DGVELDGRPLR 464 + + R ++ Sbjct: 107 NNYLMGERIIK 117
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 37.7 bits (86), Expect = 0.029 Identities = 22/72 (30%), Positives = 36/72 (50%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 V+ GNL VR + L F L + +R+ G+ + FGFV F + A+ + Sbjct: 12 VFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALL 70 Query: 432 DGVELDGRPLRL 467 +G+ L GRP+ + Sbjct: 71 NGIRLYGRPINV 82
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 265 Score = 37.4 bits (85), Expect = 0.038 Identities = 22/98 (22%), Positives = 47/98 (47%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ GNL V + L F ++ ++ ++D G+ + F FV+F A+ + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKLKQFAFVNFKHEVSVPYAMNLL 70 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQQEKNSLT 545 +G++L GRP+++ + + A S + Q +L+ Sbjct: 71 NGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLS 108
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 37.4 bits (85), Expect = 0.038 Identities = 40/152 (26%), Positives = 52/152 (34%), Gaps = 12/152 (7%) Frame = +3 Query: 48 DRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPR------------GGEXX 191 D G+ FV + +A AV NG L G V V PR GG Sbjct: 32 DLKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGY 91 Query: 192 XXXXXXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSR 371 Y++ NL LK F Q G V + T Sbjct: 92 SSRRTSGRDKYGPPVRTEYRLIVENLSSRCSWQDLKD-FMRQAGEVTYADAHKERTNE-- 148 Query: 372 GFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 467 G + F + D K AL +DG E++GR +RL Sbjct: 149 --GVIEFRSYSDMKRALDKLDGTEINGRNIRL 178 Score = 35.0 bits (79), Expect = 0.19 Identities = 21/68 (30%), Positives = 32/68 (47%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +VY G L + VR ++ F G L+ + G+GFV F +DA A+ Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLL--------EVDLKNGYGFVEFEDSRDADDAVYE 54 Query: 429 MDGVELDG 452 ++G EL G Sbjct: 55 LNGKELCG 62
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 37.4 bits (85), Expect = 0.038 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 +K++ G L W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 95 WKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLF---KESESVDK 151 Query: 426 AMDGVE 443 MD E Sbjct: 152 VMDQKE 157 Score = 32.7 bits (73), Expect = 0.94 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQM----FNGALLGGRTVRVNFPEVPRGGEXXXXXX 203 D IT RSRGF FV +E K + NG ++ + + + P Sbjct: 129 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP---------- 178 Query: 204 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 383 K++ G L + ++ F G + + + T + RGF F Sbjct: 179 -------------VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF 225 Query: 384 VSFHTIQDAKAALQ 425 ++F + K ++ Sbjct: 226 ITFKEEEPVKKIME 239
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 37.4 bits (85), Expect = 0.038 Identities = 22/69 (31%), Positives = 39/69 (56%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 K++ G L + ++L+ FE L V+ + ++ RSRGFGFV++ + + AA+ A Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTA 74 Query: 429 MDGVELDGR 455 ++DGR Sbjct: 75 RPH-KVDGR 82
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 37.4 bits (85), Expect = 0.038 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ DK T +S+GF F+ AV FNG + GRT+RV+ Sbjct: 67 LVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVD 110 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/72 (20%), Positives = 37/72 (51%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ G L + + + F +V ++ ++ TG+S+GF F+ + + A+ Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97 Query: 432 DGVELDGRPLRL 467 +G+++ GR +R+ Sbjct: 98 NGIKIKGRTIRV 109
>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4| Length = 489 Score = 37.4 bits (85), Expect = 0.038 Identities = 41/157 (26%), Positives = 56/157 (35%), Gaps = 12/157 (7%) Frame = +3 Query: 33 YDKI--TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 Y KI D G+ FV +A AV NG L G V V PR Sbjct: 25 YGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRS 84 Query: 207 XXXXXXXXXDD------GTYKVYAGNLG----WGVRADALKTAFEGQPGLVGARVIFERD 356 D Y++ NL W D ++ A G + Sbjct: 85 GYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQA--------GEVTYADAH 136 Query: 357 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 467 GR + G + F + D K AL+ +DG E++GR +RL Sbjct: 137 KGR-KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing| factor SRP75) (SRP001LB) Length = 494 Score = 37.4 bits (85), Expect = 0.038 Identities = 41/157 (26%), Positives = 56/157 (35%), Gaps = 12/157 (7%) Frame = +3 Query: 33 YDKI--TDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 Y KI D G+ FV +A AV NG L G V V PR Sbjct: 25 YGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRS 84 Query: 207 XXXXXXXXXDD------GTYKVYAGNLG----WGVRADALKTAFEGQPGLVGARVIFERD 356 D Y++ NL W D ++ A G + Sbjct: 85 GYGYRRSGRDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQA--------GEVTYADAH 136 Query: 357 TGRSRGFGFVSFHTIQDAKAALQAMDGVELDGRPLRL 467 GR + G + F + D K AL+ +DG E++GR +RL Sbjct: 137 KGR-KNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 37.0 bits (84), Expect = 0.050 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVN 158 ++ DK T +S+GF F+ AV FNG + GRT+RV+ Sbjct: 67 LVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVD 110 Score = 34.7 bits (78), Expect = 0.25 Identities = 15/72 (20%), Positives = 37/72 (51%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ G L + + + F +V ++ ++ TG+S+GF F+ + + A+ Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97 Query: 432 DGVELDGRPLRL 467 +G+++ GR +R+ Sbjct: 98 NGIKIKGRTIRV 109
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 37.0 bits (84), Expect = 0.050 Identities = 24/68 (35%), Positives = 33/68 (48%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +VY G L +GVR L+ F+G RD G+GFV F +DA A+ Sbjct: 4 RVYVGGLPYGVRERDLERFFKGYGR--------TRDILIKNGYGFVEFEDYRDADDAVYE 55 Query: 429 MDGVELDG 452 ++G EL G Sbjct: 56 LNGKELLG 63
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.0 bits (84), Expect = 0.050 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 +K++ G L W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---KESESVDK 153 Query: 426 AMDGVE 443 MD E Sbjct: 154 VMDQKE 159 Score = 32.7 bits (73), Expect = 0.94 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQM----FNGALLGGRTVRVNFPEVPRGGEXXXXXX 203 D IT RSRGF FV +E K + NG ++ + + + P Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP---------- 180 Query: 204 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 383 K++ G L + ++ F G + + + T + RGF F Sbjct: 181 -------------VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF 227 Query: 384 VSFHTIQDAKAALQ 425 ++F + K ++ Sbjct: 228 ITFKEEEPVKKIME 241
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 37.0 bits (84), Expect = 0.050 Identities = 22/66 (33%), Positives = 34/66 (51%) Frame = +3 Query: 246 YKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQ 425 +K++ G L W LK F +V + + TGRSRGFGFV F +++++ + Sbjct: 97 WKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLF---KESESVDK 153 Query: 426 AMDGVE 443 MD E Sbjct: 154 VMDQKE 159 Score = 32.7 bits (73), Expect = 0.94 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 4/134 (2%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQM----FNGALLGGRTVRVNFPEVPRGGEXXXXXX 203 D IT RSRGF FV +E K + NG ++ + + + P Sbjct: 131 DPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEP---------- 180 Query: 204 XXXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGF 383 K++ G L + ++ F G + + + T + RGF F Sbjct: 181 -------------VKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCF 227 Query: 384 VSFHTIQDAKAALQ 425 ++F + K ++ Sbjct: 228 ITFKEEEPVKKIME 241
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) (U1-70K) Length = 427 Score = 37.0 bits (84), Expect = 0.050 Identities = 16/68 (23%), Positives = 34/68 (50%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ L + +K FE + ++ ++ T + +G+ F+ + +D KAA + Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQA 199 Query: 432 DGVELDGR 455 DG ++DGR Sbjct: 200 DGQKIDGR 207
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 36.6 bits (83), Expect = 0.065 Identities = 22/72 (30%), Positives = 35/72 (48%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+ T +V NL R L+ F + + ++ TG+S+GF F+SFH +DA Sbjct: 237 DNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294 Query: 414 AALQAMDGVELD 449 A+ + G D Sbjct: 295 RAIAGVSGFGYD 306 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNG 125 DK T +S+GFAF++ E+AA+A+ +G Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 36.6 bits (83), Expect = 0.065 Identities = 22/72 (30%), Positives = 35/72 (48%) Frame = +3 Query: 234 DDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAK 413 D+ T +V NL R L+ F + + ++ TG+S+GF F+SFH +DA Sbjct: 237 DNATIRVT--NLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAA 294 Query: 414 AALQAMDGVELD 449 A+ + G D Sbjct: 295 RAIAGVSGFGYD 306 Score = 31.2 bits (69), Expect = 2.7 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +3 Query: 36 DKITDRSRGFAFVTMATAEEAAKAVQMFNG 125 DK T +S+GFAF++ E+AA+A+ +G Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSG 302
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 36.6 bits (83), Expect = 0.065 Identities = 19/83 (22%), Positives = 40/83 (48%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ G + + L+ F + +++ +R G S+G+GFV+F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 429 MDGVELDGRPLRLSLAAQNPPAG 497 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 36.6 bits (83), Expect = 0.065 Identities = 19/83 (22%), Positives = 40/83 (48%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ G + + L+ F + +++ +R G S+G+GFV+F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQE 92 Query: 429 MDGVELDGRPLRLSLAAQNPPAG 497 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)| Length = 262 Score = 36.6 bits (83), Expect = 0.065 Identities = 22/91 (24%), Positives = 44/91 (48%) Frame = +3 Query: 252 VYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQAM 431 ++ GNL V + L F ++ ++ ++D G+ + F FV+F A+ + Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNLL 70 Query: 432 DGVELDGRPLRLSLAAQNPPAGSTPSTAQSQ 524 +G++L GRP+++ A + A S + Q Sbjct: 71 NGIKLFGRPIKIQFRAGSSHASQEVSLSYPQ 101
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D| Length = 471 Score = 36.6 bits (83), Expect = 0.065 Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 10/179 (5%) Frame = +3 Query: 27 IIYDKITDRSRGFAFVTMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRGGEXXXXXXX 206 ++ D T RSRGF F+T + +A Q ++ G+TV +PR Sbjct: 63 VMRDAATKRSRGFGFITYTKSLMVDRA-QENRPHIIDGKTVEAK-RALPRPERESRETNI 120 Query: 207 XXXXXXXXXDDGTYKVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFV 386 K++ G L + L+ F +V +++ ++ TG+ RGF FV Sbjct: 121 SVK-----------KLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFV 169 Query: 387 SFHTIQDAKAAL----QAMDGVELDGRP--LRLSLAAQNPPAGST----PSTAQSQQEK 533 F A+ A+ V +D + L + P G PS Q QQ++ Sbjct: 170 EFDDYDAVDKAILKKQHAIKYVHVDVKKSIYNLDKKEKQQPGGLANAIKPSLNQQQQQQ 228
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 36.6 bits (83), Expect = 0.065 Identities = 18/83 (21%), Positives = 41/83 (49%) Frame = +3 Query: 249 KVYAGNLGWGVRADALKTAFEGQPGLVGARVIFERDTGRSRGFGFVSFHTIQDAKAALQA 428 +++ G + + + L+ F + +++ +R G S+G+GF++F T +DA+ LQ Sbjct: 34 RIFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFITFETQEDAQKILQE 92 Query: 429 MDGVELDGRPLRLSLAAQNPPAG 497 + + + L + A + G Sbjct: 93 AEKLNYKDKKLNIGPAIRKQQVG 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,035,842 Number of Sequences: 219361 Number of extensions: 2059087 Number of successful extensions: 8197 Number of sequences better than 10.0: 359 Number of HSP's better than 10.0 without gapping: 6891 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8020 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
