ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd26a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT018632.1| Zea mays clone EL01N0503G08.d mRNA sequence 42 2.0
2gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, co... 42 2.0
3gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc fin... 42 2.0
4dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.0
5emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment ... 40 8.1

>gb|BT018632.1| Zea mays clone EL01N0503G08.d mRNA sequence
          Length = 1714

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 572 tgatttatcagaaactgggga 592
           |||||||||||||||||||||
Sbjct: 847 tgatttatcagaaactgggga 827



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>gb|AC000353.27| Homo sapiens Chromosome 11q13 BAC Clone 18h3, complete sequence
          Length = 233089

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 551    gagagcagctgggctgcgggt 571
              |||||||||||||||||||||
Sbjct: 142053 gagagcagctgggctgcgggt 142073



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>gb|AY220877.1| Homo sapiens requiem, apoptosis response zinc finger gene (REQ) gene,
             complete cds
          Length = 20369

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 551   gagagcagctgggctgcgggt 571
             |||||||||||||||||||||
Sbjct: 20282 gagagcagctgggctgcgggt 20302



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>dbj|AP000944.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867O8, complete
             sequence
          Length = 219246

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 551   gagagcagctgggctgcgggt 571
             |||||||||||||||||||||
Sbjct: 94968 gagagcagctgggctgcgggt 94988



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>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24
          Length = 314250

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   tccattgatcagtccgacgc 280
             ||||||||||||||||||||
Sbjct: 10970 tccattgatcagtccgacgc 10951



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tccattgatcagtccgacgc 140
             ||||||||||||||||||||
Sbjct: 10970 tccattgatcagtccgacgc 10951


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,235,766
Number of Sequences: 3902068
Number of extensions: 3235766
Number of successful extensions: 60206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60190
Number of HSP's gapped (non-prelim): 16
length of query: 594
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 571
effective length of database: 17,143,297,704
effective search space: 9788822988984
effective search space used: 9788822988984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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