ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25k17 |
|---|---|
| Clone Library Name | barley_pub |
>XYNB_PRUPE (P83344) Putative beta-D-xylosidase (EC 3.2.1.-) (PpAz152)| (Fragment) Length = 461 Score = 109 bits (272), Expect = 7e-24 Identities = 66/181 (36%), Positives = 91/181 (50%), Gaps = 1/181 (0%) Frame = +3 Query: 3 MTDMRMRADPATGYPGRSYRFYQGNAVYKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAG 182 MTDM MRADPA GYPGR+YRFY G V+ FG GLSY+ F+ LA T P T+L A Sbjct: 280 MTDMAMRADPARGYPGRTYRFYIGPVVFPFGLGLSYTTFAHNLAHGPTLVSVPLTSLKAT 339 Query: 183 LTATPSADGGASYAVEEIGADGCEQLK-FPAVVEVQNHGPLDGKHSVLMFLRWPNATGGR 359 +T + + C L V+V+N G +DG H++L+F P+ Sbjct: 340 ANSTMLS------KTVRVSHPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPPDGKWAS 393 Query: 360 PVSQLIGFRTQHLKAGEKASLTFDVRPCEHFSRAREDGKKVIDAGSHFLKVGKDEHEISF 539 QL+GF H+ G + + V C+H S G + I G H L++G H +S Sbjct: 394 S-KQLMGFHKIHIATGSEKRVRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHVSL 452 Query: 540 E 542 + Sbjct: 453 Q 453
>BGLX_ECOLI (P33363) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 765 Score = 52.8 bits (125), Expect = 7e-07 Identities = 54/176 (30%), Positives = 75/176 (42%), Gaps = 6/176 (3%) Frame = +3 Query: 24 ADPATGYPGRSYRFYQGNAVYKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAGLTATPSA 203 AD Y R + G A+Y FGYGLSY+ F+ VS AP T Sbjct: 621 ADKPNKYTSRYFDEANG-ALYPFGYGLSYTTFT----VSDVKLSAP----------TMKR 665 Query: 204 DGGASYAVEEIGADGCEQLKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGF 383 DG K A V+V N G +G V M+L+ A+ RPV QL GF Sbjct: 666 DG-----------------KVTASVQVTNTGKREGATVVQMYLQDVTASMSRPVKQLKGF 708 Query: 384 RTQHLKAGEKASLTF--DVRPCEHFSRA----REDGKKVIDAGSHFLKVGKDEHEI 533 LK GE +++F D+ + +++ E GK + G+ +V K E E+ Sbjct: 709 EKITLKPGETQTVSFPIDIEALKFWNQQMKYDAEPGKFNVFIGTDSARVKKGEFEL 764
>BGLX_SALTY (Q56078) Periplasmic beta-glucosidase precursor (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) (T-cell inhibitor) Length = 765 Score = 47.0 bits (110), Expect = 4e-05 Identities = 38/118 (32%), Positives = 52/118 (44%) Frame = +3 Query: 81 VYKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAGLTATPSADGGASYAVEEIGADGCEQL 260 +Y FGYGLSY+ F+ VS +P T DG Sbjct: 639 LYPFGYGLSYTTFT----VSDVTLSSP----------TMQRDG----------------- 667 Query: 261 KFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAGEKASLTFDV 434 K A VEV N G +G + M+L+ A+ RPV QL GF LK GE+ +++F + Sbjct: 668 KVTASVEVTNTGKREGATVIQMYLQDVTASMSRPVKQLKGFEKITLKPGERKTVSFPI 725
>BGLS_KLUMA (P07337) Beta-glucosidase precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 845 Score = 45.4 bits (106), Expect = 1e-04 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 5/164 (3%) Frame = +3 Query: 57 YRFY---QGNAVYKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAGLTATPSADGGASYAV 227 YR+Y Q + FGYGLSY+ F ++ + V Sbjct: 700 YRYYEKLQRKVAFPFGYGLSYTTFELDIS---------------------------DFKV 732 Query: 228 EEIGADGCEQLKFPAVVEVQNHGP-LDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKA 404 + K V+V+N G G V ++ N+ RPV +L GF HL+ Sbjct: 733 TDD--------KIDISVDVKNTGDKFAGSEVVQVYFSALNSKVSRPVKELKGFEKVHLEP 784 Query: 405 GEKASLTFDVRPCEHFSRARED-GKKVIDAGSHFLKVGKDEHEI 533 GEK ++ ++ + S E+ GK ++AG + + VG +I Sbjct: 785 GEKKTVNIELELKDAISYFNEELGKWHVEAGEYLVSVGTSSDDI 828
>BGLB_CLOTM (P14002) Thermostable beta-glucosidase B (EC 3.2.1.21)| (Gentiobiase) (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 754 Score = 41.6 bits (96), Expect = 0.002 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 5/179 (2%) Frame = +3 Query: 57 YRFYQGNAV---YKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAGLTATPSADGGASYAV 227 YR+Y + + FG+GLSY+KF + + K N + ++ Sbjct: 529 YRYYDTKGIEPLFPFGHGLSYTKF--EYSDISVDKKDVSDNSIINVS------------- 573 Query: 228 EEIGADGCEQLKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAG 407 V+V+N G + GK V ++++ ++ RP +L GF L G Sbjct: 574 ----------------VKVKNVGKMAGKEIVQLYVKDVKSSVRRPEKELKGFEKVFLNPG 617 Query: 408 EKASLTF--DVRPCEHFSRAREDGKKVIDAGSHFLKVGKDEHEISFEA*TRSSILVLAR 578 E+ ++TF D R +++ +D +++G + +G+ +I + R + V R Sbjct: 618 EEKTVTFTLDKRAFAYYNTQIKDWH--VESGEFLILIGRSSRDIVLKESVRVNSTVKIR 674
>FOXN1_HUMAN (O15353) Forkhead box protein N1 (Transcription factor winged-helix| nude) Length = 648 Score = 37.7 bits (86), Expect = 0.024 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Frame = +3 Query: 207 GGASYAVEEIGADGCEQLKFPAVVEVQNHGPLDGK----HSVLMFLRWPNA-TGGRPVSQ 371 GG SY + +G+ + + H PL K +S+L+F+ N+ TG PVS+ Sbjct: 237 GGGSYPIPYLGSSHYQYQRMAPQASTDGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSE 296 Query: 372 LIGFRTQH 395 + F T+H Sbjct: 297 IYNFMTEH 304
>BGLS_BUTFI (P16084) Beta-glucosidase A (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 830 Score = 37.4 bits (85), Expect = 0.032 Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Frame = +3 Query: 84 YKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAGLTATPSADGGASYAVEEIG-ADGCEQL 260 Y FGYGLSY+ F LL A P + A +E+G +D Sbjct: 308 YPFGYGLSYTTF-----------------LLEDYKAEPF----VASAADEVGKSDSDLAD 346 Query: 261 KFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGF-RTQHLKAGEKASLT 425 A V V N G + GK V ++ P G+P L G+ +T+ L+ GE +T Sbjct: 347 AIVASVTVTNIGKIPGKEVVQLYYSAPQGKLGKPAKVLGGYAKTRLLQPGESQRVT 402
>FOXN1_MOUSE (Q61575) Forkhead box protein N1 (Transcription factor winged-helix| nude) (Hepatocyte nuclear factor 3 forkhead homolog 11) (HNF-3/forkhead homolog 11) (HFH-11) Length = 648 Score = 37.4 bits (85), Expect = 0.032 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 5/68 (7%) Frame = +3 Query: 207 GGASYAVEEIGADGCEQLKFPAVVEVQNHGPLDGK----HSVLMFLRWPNA-TGGRPVSQ 371 GG SY V +G+ + + H PL K +S+L+F+ N+ TG PVS+ Sbjct: 237 GGGSYPVPYLGSPHYPYQRIAPQANAEGHQPLFPKPIYSYSILIFMALKNSKTGSLPVSE 296 Query: 372 LIGFRTQH 395 + F T+H Sbjct: 297 IYNFMTEH 304
>BGLS_RUMAL (P15885) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)| (Beta-D-glucoside glucohydrolase) Length = 947 Score = 35.4 bits (80), Expect = 0.12 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = +3 Query: 210 GASYAVEEIGADGCEQLKFPAVV-EVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGF- 383 G SY EI A+G + + +V+N G GK V ++L PN G+ L GF Sbjct: 271 GLSYTQFEISAEGRKTDDGVVITAKVKNIGSAAGKEVVQVYLEAPNCKLGKAARVLCGFE 330 Query: 384 RTQHLKAGEKASLTFDV 434 +T+ L E+ +LT +V Sbjct: 331 KTKVLAPNEEQTLTIEV 347
>ZFX_HUMAN (P17010) Zinc finger X-chromosomal protein| Length = 805 Score = 32.7 bits (73), Expect = 0.78 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = -2 Query: 188 GQAGEQIRAWCFVAGPGDS*LAGELGVTEAVAELVHGVALVEAVAPARV 42 G E I+ + F A PG+ L G + + E+ E HGV L++ + RV Sbjct: 245 GTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRV 293
>ILF3_BRARE (Q6NXA4) Interleukin enhancer-binding factor 3 homolog| Length = 833 Score = 32.3 bits (72), Expect = 1.0 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +2 Query: 326 VPPVAQRDGRASGEPADWVPNPASQGRREGQ 418 +PP+ G SG P+D +PNP +GR G+ Sbjct: 606 MPPMHTGFGMVSGPPSDMMPNPRGRGRGRGR 636
>ZFX_MOUSE (P17012) Zinc finger X-chromosomal protein| Length = 839 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -2 Query: 188 GQAGEQIRAWCFVAGPGDS*LAGELGVTEAVAELVHGVALVEAVAPARV 42 G E I+ + F A PG+ L G + + E+ E HGV L++ RV Sbjct: 240 GTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENEHGVELLDPNNSIRV 288
>ZFX_BOVIN (O62836) Zinc finger X-chromosomal protein| Length = 800 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/49 (34%), Positives = 25/49 (51%) Frame = -2 Query: 188 GQAGEQIRAWCFVAGPGDS*LAGELGVTEAVAELVHGVALVEAVAPARV 42 G E I+ + F A PG+ L G + + E+ E HGV L++ RV Sbjct: 240 GTCPEVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNNSIRV 288
>BGL2_SACFI (P22507) Beta-glucosidase 2 precursor (EC 3.2.1.21) (Gentiobiase)| (Cellobiase) (Beta-D-glucoside glucohydrolase) Length = 880 Score = 31.6 bits (70), Expect = 1.7 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Frame = +3 Query: 237 GADGCEQLKFPAVVEVQNHGPLDGKHSVLMFLRWPNATGGRPVSQLIGFRTQHLKAGEKA 416 G D ++ + V+VQN G K ++L+ P QL GF L GEK Sbjct: 774 GNDALWEVAYKVEVDVQNLGNSTDKFVPQLYLKHPEDGKFETPVQLRGFEKVELSPGEKK 833 Query: 417 SLTFDV--RPCEHFSRAREDGKKVIDAGSHFLKVGKDEHEI 533 ++ F++ R + R+ ++++G++ +G ++I Sbjct: 834 TVEFELLRRDLSVWDTTRQSW--IVESGTYEALIGVAVNDI 872
>ZFY_PANTR (Q6B4Z5) Zinc finger Y-chromosomal protein| Length = 801 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 176 EQIRAWCFVAGPGDS*LAGELGVTEAVAELVHGVALVEAVAPARV 42 E I+ + F A PG+ L G + + E+ E HGV L++ + RV Sbjct: 245 EVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRV 289
>ZFY_HUMAN (P08048) Zinc finger Y-chromosomal protein| Length = 801 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 176 EQIRAWCFVAGPGDS*LAGELGVTEAVAELVHGVALVEAVAPARV 42 E I+ + F A PG+ L G + + E+ E HGV L++ + RV Sbjct: 245 EVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRV 289
>ZFY_GORGO (Q52V16) Zinc finger Y-chromosomal protein| Length = 801 Score = 31.6 bits (70), Expect = 1.7 Identities = 16/45 (35%), Positives = 25/45 (55%) Frame = -2 Query: 176 EQIRAWCFVAGPGDS*LAGELGVTEAVAELVHGVALVEAVAPARV 42 E I+ + F A PG+ L G + + E+ E HGV L++ + RV Sbjct: 245 EVIKVYIFKADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRV 289
>ZN516_MOUSE (Q7TSH3) Zinc finger protein 516| Length = 1157 Score = 30.4 bits (67), Expect = 3.9 Identities = 18/40 (45%), Positives = 22/40 (55%) Frame = +2 Query: 287 EPRSPGREALCADVPPVAQRDGRASGEPADWVPNPASQGR 406 +P SPG AD P +A+ SGE A VP PAS G+ Sbjct: 556 QPSSPGSACAIADSPGLAEEVVDDSGEEA--VPEPASGGQ 593
>DONS_MOUSE (Q9QXP4) Downstream neighbor of Son protein (Protein 3SG)| Length = 560 Score = 30.0 bits (66), Expect = 5.0 Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 18/137 (13%) Frame = -3 Query: 508 LRKCEPASITFLPSSLALLKCSHGLTSNVRLAFSPALRCWVRNPISWLTGRPPVALGHRR 329 ++ C +T LP S+ K S L R AF AL W+ SWL P + + Sbjct: 182 VQHCRATEVT-LPQSIQDPKLSTAL----RCAFQQALVYWLHPAFSWLPLFPRIGADRKM 236 Query: 328 NISTECFPS--------RGPWFCTSTTAGNL----------SCSHPSAPISSTA*LAPPS 203 T + + W + T+ NL CS+ + A LA S Sbjct: 237 AAKTSPWSADETLQHALMSDWSVSFTSLYNLLKTKLCPYFYVCSYQFTVLFRAAGLAGSS 296 Query: 202 ALGVAVRPASRFVRGAL 152 + + P +R +R A+ Sbjct: 297 VITALISPTTRGLREAM 313
>FRS3_HUMAN (O43559) Fibroblast growth factor receptor substrate 3 (FGFR| substrate 3) (Suc1-associated neurotrophic factor target 2) (SNT-2) (FGFR signalling adaptor SNT2) Length = 491 Score = 30.0 bits (66), Expect = 5.0 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Frame = -3 Query: 358 RPPVALGHRRNISTECFPSRGPWFCTSTTAGNLSCSHPSAPISST-A*LAPPSALGVAVR 182 +PP ALG+ + + P GP F S HPS ST A +AP V Sbjct: 134 QPPNALGYTVSSFSNGCPGEGPRFSAPRRLSTSSLRHPSLGEESTHALIAPDEQSHTYVN 193 Query: 181 -PAS----RFVRGALLPVPE 137 PAS R R L P+PE Sbjct: 194 TPASEDDHRRGRHCLQPLPE 213
>THIC_CORDI (P61424) Thiamine biosynthesis protein thiC| Length = 599 Score = 30.0 bits (66), Expect = 5.0 Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +2 Query: 302 GREALCADVPPVAQRDGRASGEPADWVPNP--ASQGRREGQPHVRRQAM 442 GRE AD AQR G AS E P P A QG+R Q H RQ + Sbjct: 89 GRERNLADDGRSAQRRGAASLEWKGVKPTPRRAKQGKRVTQMHYARQGI 137
>QACA_STAAU (P0A0J9) Antiseptic resistance protein| Length = 514 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +3 Query: 81 VYKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAGLTATPSADGGASYAVEE 233 +Y FG+ LSYS + L + G G + + TP++ G + AVEE Sbjct: 357 MYFFGHPLSYSTMALALILVGAGMASLAVASALIMLETPTSKAGNAAAVEE 407
>QACA_STAAM (P0A0J8) Antiseptic resistance protein| Length = 514 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/51 (33%), Positives = 26/51 (50%) Frame = +3 Query: 81 VYKFGYGLSYSKFSRQLAVSGTGNKAPRTNLLAGLTATPSADGGASYAVEE 233 +Y FG+ LSYS + L + G G + + TP++ G + AVEE Sbjct: 357 MYFFGHPLSYSTMALALILVGAGMASLAVASALIMLETPTSKAGNAAAVEE 407
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 29.6 bits (65), Expect = 6.6 Identities = 22/71 (30%), Positives = 25/71 (35%) Frame = +2 Query: 302 GREALCADVPPVAQRDGRASGEPADWVPNPASQGRREGQPHVRRQAMRAL*QGEGGWQEG 481 GR D PP R P P SQ + P +R+A G Q Sbjct: 2351 GRAPSAPDKPPRTPRKQATPSRVLPTKPKPNSQNKPRPPPSEQRKA------EPGHTQRK 2404 Query: 482 DRCRLTFPQGR 514 DR FPQGR Sbjct: 2405 DRLGKAFPQGR 2415
>CIC_MOUSE (Q924A2) Protein capicua homolog| Length = 1606 Score = 29.6 bits (65), Expect = 6.6 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Frame = -3 Query: 445 SHGLTSNVRLAFS---PALRCWVRNPISWLTGRPPVALGHRRNISTECFPSRGPWFCTST 275 S+G TS+V L F+ P+ +V+ +S G+ P+ + +S P P CT++ Sbjct: 1029 SYGPTSSVALGFTSLGPSGPAFVQPLLS--AGQAPLLAPGQVGVSPVPSPQLPP-ACTAS 1085 Query: 274 TAGNLSCSHPSAPISSTA*LAPPS 203 ++ +P +P ++A L PPS Sbjct: 1086 GGPVITAFYPGSPAPTSAPLGPPS 1109
>YHF0_YEAST (P38721) Hypothetical 79.0 kDa protein in CBP2 5'region| Length = 697 Score = 29.3 bits (64), Expect = 8.6 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%) Frame = +3 Query: 165 TNLLAGLTATPSADGGASYAVEEIGADG-CEQLKFPAVVEVQNHGPLDGKHSVLMFL--- 332 TN T T S + A E+ DG E +F V ++ N P K S ++ L Sbjct: 283 TNSSTNATTTESTNASAK---EDANKDGNAEDNRFHPVTDI-NKEPYKRKGSQMVLLERK 338 Query: 333 ----RWPNATGGRPVSQLIGFRTQHLK 401 ++PN + V Q +GFR+ +K Sbjct: 339 KLKAQFPNTSENMNVLQFLGFRSDEIK 365
>Y4UE_RHISN (Q53198) Putative transposase y4uE| Length = 359 Score = 29.3 bits (64), Expect = 8.6 Identities = 16/36 (44%), Positives = 20/36 (55%) Frame = -1 Query: 414 PSRRP*DAGFGTQSAGSPDARPSRWATGGTSAQSAS 307 P R+P A G SAG PD +P R GG A+ A+ Sbjct: 325 PPRQP-AAQTGASSAGWPDRQPHRNRAGGAGAEEAA 359
>Y3672_STRCO (P40180) Putative glycosyl transferase SCO3672 (EC 2.-.-.-)| Length = 411 Score = 29.3 bits (64), Expect = 8.6 Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 12/88 (13%) Frame = +2 Query: 302 GREALCADVPPVAQRDGRASGEPADWVPNPASQG-------RREGQPHVRRQA-----MR 445 G ALCA V V GR G+ A WV A+ G R G +RR A +R Sbjct: 283 GGAALCAVVVGVLAHTGRVGGQAALWVAGGAAAGVLGLLRVRVYGPARLRRGAGVRAPVR 342 Query: 446 AL*QGEGGWQEGDRCRLTFPQGRKRRAR 529 +G W R P+ RRAR Sbjct: 343 RAGRGARAWAVVRR-----PRTAMRRAR 365
>TRI36_HUMAN (Q9NQ86) Tripartite motif protein 36 (Zinc-binding protein Rbcc728)| (RING finger protein 98) Length = 728 Score = 29.3 bits (64), Expect = 8.6 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 4/82 (4%) Frame = -3 Query: 424 VRLAFSPALRCWVRNPISWLTGRPPVALGHRRNISTECFPSRGPWFCTSTTAGNLSCSHP 245 V +A S L+ W+R+P ++ R GH CF S P+ T T G P Sbjct: 589 VGVASSDKLQEWLRSPRDAVSPRYEQDSGHDSGSEDACFDSSQPF--TLVTIGMQKFFIP 646 Query: 244 SAPISS----TA*LAPPSALGV 191 +P SS L P+++G+ Sbjct: 647 KSPTSSNEPENRVLPMPTSIGI 668 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,366,223 Number of Sequences: 219361 Number of extensions: 1664653 Number of successful extensions: 5760 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 5536 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5755 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
