ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25k16 |
|---|---|
| Clone Library Name | barley_pub |
>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer| of yellow 3) Length = 2006 Score = 31.6 bits (70), Expect = 1.2 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Frame = +2 Query: 233 SSTT*ESHTACTSASTAGMNIASGASQTAGWEGEVQ*TWTQNWH*TILGNGRR--HRALR 406 SS+ ES +ST+ + ++GAS AG E E + + + G R HR R Sbjct: 1648 SSSDTESGDESDFSSTSSCSSSTGASSGAGSEDEDGNECSSSVRLSTCGVCLRSQHRNAR 1707 Query: 407 QPDVSATNCFSCLVRCHPVVADLYP 481 + C++C R HP D+ P Sbjct: 1708 DMPEAFIRCYTCRKRVHPSCVDMPP 1732
>SYI_GLUOX (Q5FRI6) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 960 Score = 31.2 bits (69), Expect = 1.6 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -2 Query: 304 PGGDVHAGSRCARARRVTLLSC*RWRLLPRVGKNSSLPQHC 182 PG H G + RA C W++LP VG+N+ P C Sbjct: 913 PGDTAHGGPQVERAPGHKCARC--WKVLPEVGENTEHPALC 951
>RECA_CHLTR (P48287) Protein recA (Recombinase A)| Length = 352 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Frame = -2 Query: 466 DHRMAPHQT---GKTVRR*NIRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSL 311 +H + P+ G + I P+C S+A +A+ G+V V+ S+ P L Sbjct: 97 EHALDPNYAALIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSEL 156 Query: 310 RGPGGDVHAG 281 G GDVH G Sbjct: 157 EGEIGDVHVG 166
>RECA_CHLMU (Q9PLS6) Protein recA (Recombinase A)| Length = 354 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%) Frame = -2 Query: 466 DHRMAPHQT---GKTVRR*NIRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSL 311 +H + P+ G + I P+C S+A +A+ G+V V+ S+ P L Sbjct: 97 EHALDPNYAALIGANINDLMISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSEL 156 Query: 310 RGPGGDVHAG 281 G GDVH G Sbjct: 157 EGEIGDVHVG 166
>RECA_CHLCV (Q821E6) Protein recA (Recombinase A)| Length = 350 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -2 Query: 415 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 281 I P+C S+A +A+ G+V V+ S+ P L G GDVH G Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVG 166
>RECA_CHLAB (Q5L4P3) Protein recA (Recombinase A)| Length = 349 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -2 Query: 415 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 281 I P+C S+A +A+ G+V V+ S+ P L G GDVH G Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVG 166
>RECA_CHLPN (Q9Z7E4) Protein recA (Recombinase A)| Length = 353 Score = 30.0 bits (66), Expect = 3.5 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = -2 Query: 415 IRLPEC-----SMAPAVAKDGSVPVLGPGSLYLSFPPGSLRGPGGDVHAG 281 I P+C S+A +A+ G+V V+ S+ P L G GDVH G Sbjct: 117 ISQPDCGEDALSIAELLARSGAVDVIVIDSVAALVPKSELEGDIGDVHVG 166
>RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1073 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +3 Query: 198 EEFLPTRGNKRHRQQLKRVTRRARAHRL 281 + FLP R RQ L +TRRA+ HRL Sbjct: 413 DNFLPVNKGGRPRQHLLSLTRRAQKHRL 440
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +1 Query: 244 LRESHGVHERIDCRHEHRLRGLSNCRVGRRGTMNL 348 L E HGV DC HR + CR R GT + Sbjct: 2488 LAEQHGVWTARDCELVHRNGSHARCRCSRTGTFGV 2522
>COIA1_HUMAN (P39060) Collagen alpha-1(XVIII) chain precursor [Contains:| Endostatin] Length = 1516 Score = 24.3 bits (51), Expect(2) = 6.9 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%) Frame = -2 Query: 403 ECSMAPAVAKDGSVPVLG----PGSLYLSFPPGSLRGPGGDVHAG 281 E S + V + +V LG PGS +S GS+R PGG V G Sbjct: 472 EDSRSEEVEEQTTVASLGAQTLPGSDSVSTWDGSVRTPGGRVKEG 516 Score = 23.1 bits (48), Expect(2) = 6.9 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = -3 Query: 171 RAGPPTRTRQQSPPHLQCHGMPL 103 RAGPP PP L C PL Sbjct: 533 RAGPPGSPCLPGPPGLPCPVSPL 555
>OPPD_LACLC (P50980) Oligopeptide transport ATP-binding protein oppD| Length = 338 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 370 HPWQRPAPSSTPAA*CFSDELFFLFGAVPS 459 HP+ R S P+A SD+L+ + G+VPS Sbjct: 250 HPYTRSLLRSNPSAETVSDDLYVIPGSVPS 279
>OPPD_LACLA (Q07733) Oligopeptide transport ATP-binding protein oppD| Length = 338 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +1 Query: 370 HPWQRPAPSSTPAA*CFSDELFFLFGAVPS 459 HP+ R S P+A SD+L+ + G+VPS Sbjct: 250 HPYTRSLLRSNPSAETVSDDLYVIPGSVPS 279
>Y2298_ANASP (O52750) Hypothetical UPF0052 protein alr2298| Length = 456 Score = 28.9 bits (63), Expect = 7.8 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 8/81 (9%) Frame = -2 Query: 484 LWIQVGDHRMA------PHQTGKTVRR*NIRL--PECSMAPAVAKDGSVPVLGPGSLYLS 329 LW ++ D R P GK V+ I P A K+ ++GPGSLY S Sbjct: 265 LWAELADGRRIEGESSIPKAGGKIVKIGCIPANPPALPAAIKAIKEADYIIIGPGSLYTS 324 Query: 328 FPPGSLRGPGGDVHAGSRCAR 266 P L D A S+ R Sbjct: 325 LIPNLLVSDIADAIAQSQAPR 345 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,459,048 Number of Sequences: 219361 Number of extensions: 1694823 Number of successful extensions: 5243 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5034 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5241 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3465624120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
