ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25k16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_517811.1| PREDICTED: Pan troglodytes hypothetical protein XP_517811 (LOC461926), mRNA Length = 1506 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 1299 tttggttttctttcctttgggt 1278
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 386 cggcgccatcgagcactccggc 407 |||||||||||||||||||||| Sbjct: 291759 cggcgccatcgagcactccggc 291738
>ref|NM_194283.3| Homo sapiens DnaJ homology subfamily A member 5 (DNAJA5), transcript variant 1, mRNA Length = 6218 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 1751 tttggttttctttcctttgggt 1730
>ref|NM_001012339.2| Homo sapiens DnaJ homology subfamily A member 5 (DNAJA5), transcript variant 2, mRNA Length = 6083 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 1616 tttggttttctttcctttgggt 1595
>dbj|AK127749.1| Homo sapiens cDNA FLJ45849 fis, clone OCBBF2014745 Length = 2725 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 1181 tttggttttctttcctttgggt 1160
>emb|CR610463.1| full-length cDNA clone CS0DJ002YC08 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human) Length = 1388 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 709 tttggttttctttcctttgggt 688
>gb|AC008795.7| Homo sapiens chromosome 5 clone CTD-2052F19, complete sequence Length = 113750 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 53475 tttggttttctttcctttgggt 53496
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 16 gccgccgccgcgggcgcggtcg 37 |||||||||||||||||||||| Sbjct: 2896892 gccgccgccgcgggcgcggtcg 2896871
>gb|AY177688.1| Homo sapiens GS3 protein mRNA, complete cds Length = 2322 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 1625 tttggttttctttcctttgggt 1604
>gb|BC050472.1| Homo sapiens DnaJ homology subfamily A member 5, mRNA (cDNA clone IMAGE:6471558), partial cds Length = 1622 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 916 tttggttttctttcctttgggt 895
>gb|AY258422.1| Homo sapiens DnaJ domain protein mRNA, complete cds Length = 2315 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgggt 95 |||||||||||||||||||||| Sbjct: 1619 tttggttttctttcctttgggt 1598
>emb|CR626857.1| Rice Cluster I (RC-I), uncultured archeon clone 3D10 complete sequence Length = 36858 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 368 accatccttggcaacggccggc 389 |||||||||||||||||||||| Sbjct: 8487 accatccttggcaacggccggc 8508
>gb|AC097447.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0042K08, complete sequence Length = 117839 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 gccggtgccggcatgccgccgccgc 26 |||||||||||| |||||||||||| Sbjct: 38271 gccggtgccggcttgccgccgccgc 38295
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 gccggtgccggcatgccgccgccgc 26 |||||||||||| |||||||||||| Sbjct: 3923503 gccggtgccggcttgccgccgccgc 3923527
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 gccggtgccggcatgccgccgccgc 26 |||||||||||| |||||||||||| Sbjct: 3923424 gccggtgccggcttgccgccgccgc 3923448
>gb|AC102101.7| Mus musculus chromosome 15, clone RP23-74N15, complete sequence Length = 191261 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 75543 tttggttttctttcctttgg 75524
>ref|XM_976393.1| PREDICTED: Mus musculus RIKEN cDNA 4930461P20 gene, transcript variant 2 (4930461P20Rik), mRNA Length = 2011 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 1506 tttggttttctttcctttgg 1487
>ref|XM_976430.1| PREDICTED: Mus musculus RIKEN cDNA 4930461P20 gene, transcript variant 3 (4930461P20Rik), mRNA Length = 1897 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 1389 tttggttttctttcctttgg 1370
>ref|XM_127961.7| PREDICTED: Mus musculus RIKEN cDNA 4930461P20 gene (4930461P20Rik), mRNA Length = 2137 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 1629 tttggttttctttcctttgg 1610
>ref|XM_906184.2| PREDICTED: Mus musculus RIKEN cDNA 4930461P20 gene (4930461P20Rik), mRNA Length = 2139 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 1629 tttggttttctttcctttgg 1610
>gb|AC113244.19| Mus musculus chromosome 19, clone RP23-172E2, complete sequence Length = 224351 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 ctgtttttcctgtttggtgc 449 |||||||||||||||||||| Sbjct: 136434 ctgtttttcctgtttggtgc 136453
>emb|CR792425.6| Zebrafish DNA sequence from clone DKEY-81N9 in linkage group 2, complete sequence Length = 168311 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 gttttcttgtttcaaacttc 59 |||||||||||||||||||| Sbjct: 24160 gttttcttgtttcaaacttc 24141
>emb|AJ786317.1| Streptomyces fradiae putative neomycin biosynthetic gene cluster, strain ATCC 10745 Length = 42149 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 gccgccgcgggcgcggtcgg 38 |||||||||||||||||||| Sbjct: 12469 gccgccgcgggcgcggtcgg 12488
>emb|AJ843080.1| Streptomyces fradiae neomycin biosynthetic gene cluster, strain MCIMB 8233 Length = 30837 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gccgccgcgggcgcggtcgg 38 |||||||||||||||||||| Sbjct: 8223 gccgccgcgggcgcggtcgg 8204
>gb|AC093024.7| Homo sapiens 12 BAC RP11-12L19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 32393 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tggttttctttcctttgggt 95 |||||||||||||||||||| Sbjct: 25848 tggttttctttcctttgggt 25867
>gb|AE014238.1| Streptococcus agalactiae 2603V/R section 48 of 100 of the complete genome Length = 21317 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ttttcttgtttcaaacttcc 60 |||||||||||||||||||| Sbjct: 18589 ttttcttgtttcaaacttcc 18608
>gb|AY831460.1| Pseudomonas putida strain GJ31 nahINLOMKJX gene cluster, complete sequence Length = 5943 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 381 acggccggcgccatcgagca 400 |||||||||||||||||||| Sbjct: 2914 acggccggcgccatcgagca 2933
>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6 Length = 233050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 ttttcttgtttcaaacttcc 60 |||||||||||||||||||| Sbjct: 150262 ttttcttgtttcaaacttcc 150281
>gb|AC087113.11| Mus Musculus Strain C57BL6/J Chromosome 15 BAC, RP23-99A15, Complete Sequence, complete sequence Length = 223882 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 23384 tttggttttctttcctttgg 23365
>gb|AC127020.16| Medicago truncatula clone mth2-9p1, complete sequence Length = 127642 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 atgaacctggacccaaaact 359 |||||||||||||||||||| Sbjct: 51619 atgaacctggacccaaaact 51600
>dbj|AB211959.1| Streptomyces fradiae orf6, neoU, neoT, neoS, neoR, neoA, neoB, neoC, neoD, neoE, neoF, neoG, neoH, neoI, neoJ, neoK, neoL, neoM, neoN, neoO, neoP, neoQ, orf1, orf2, orf3, orf4, orf5 genes, complete and partial cds Length = 39237 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gccgccgcgggcgcggtcgg 38 |||||||||||||||||||| Sbjct: 12040 gccgccgcgggcgcggtcgg 12021
>gb|AF492384.1| Rattus norvegicus putative regulation protein GS3 mRNA, complete cds Length = 1175 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 638 tttggttttctttcctttgg 619
>gb|AC008842.6| Homo sapiens chromosome 5 clone CTD-2155H8, complete sequence Length = 125238 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 gtgggaaggagaggtacaatgaac 345 |||||||||||||||| ||||||| Sbjct: 105118 gtgggaaggagaggtagaatgaac 105095
>dbj|AK020688.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched library, clone:9930116P15 product:hypothetical Cytochrome c family heme-binding site/Zinc finger, C2H2 type containing protein, full insert sequence Length = 955 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 449 tttggttttctttcctttgg 430
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aagtgtggtggtgactgctg 144 |||||||||||||||||||| Sbjct: 34351388 aagtgtggtggtgactgctg 34351369
>gb|AC010165.10|AC010165 Homo sapiens chromosome 5 clone RP11-17J3, complete sequence Length = 168909 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 gtgggaaggagaggtacaatgaac 345 |||||||||||||||| ||||||| Sbjct: 7440 gtgggaaggagaggtagaatgaac 7463
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 cgccgccgcgggcgcggtcg 37 |||||||||||||||||||| Sbjct: 3347876 cgccgccgcgggcgcggtcg 3347857
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 aagtgtggtggtgactgctg 144 |||||||||||||||||||| Sbjct: 33732 aagtgtggtggtgactgctg 33713
>gb|AF246323.1|AF246323 Acidithiobacillus ferroxidans pyruvate kinase gene, partial sequence Length = 1677 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 actgccggcatgaacatcgc 297 |||||||||||||||||||| Sbjct: 684 actgccggcatgaacatcgc 703
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 tgccgccgccgcgggcgcgg 34 |||||||||||||||||||| Sbjct: 757731 tgccgccgccgcgggcgcgg 757712
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gccgccgcgggcgcggtcgg 38 |||||||||||||||||||| Sbjct: 3411889 gccgccgcgggcgcggtcgg 3411870
>gb|BC086587.1| Rattus norvegicus putative regulation protein GS3, mRNA (cDNA clone MGC:105321 IMAGE:7309461), complete cds Length = 1255 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tttggttttctttcctttgg 93 |||||||||||||||||||| Sbjct: 715 tttggttttctttcctttgg 696
>emb|AL133247.1|CNS01DUK BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 11B22 of library CITB_978_SKB from chromosome 2 of Homo sapiens (Human) Length = 189316 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 tggtggtgactgctgcctgg 149 |||||||||||||||||||| Sbjct: 98209 tggtggtgactgctgcctgg 98190
>emb|CT027588.10| Mouse DNA sequence from clone RP23-461P14 on chromosome 9, complete sequence Length = 182404 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cctggacccaaaactggcac 364 |||||||||||||||||||| Sbjct: 75774 cctggacccaaaactggcac 75755
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 gcgacgaactgtttttcctg 441 |||||||||||||||||||| Sbjct: 1375584 gcgacgaactgtttttcctg 1375565
>emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene cluster, strain DSM 40063 Length = 50466 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 gccgccgcgggcgcggtcgg 38 |||||||||||||||||||| Sbjct: 16769 gccgccgcgggcgcggtcgg 16750
>gb|DQ294599.1| Spiromyces aspiralis isolate AFTOL-ID-185 RNA polymerase II largest subunit (RPB1) gene, partial cds Length = 3067 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tcctttgggtcgtgttaaag 105 |||||||||||||||||||| Sbjct: 1796 tcctttgggtcgtgttaaag 1777
>dbj|AB047857.1| Homo sapiens SRD5A2 gene for steroid 5 alpha-reductase type II, partial cds Length = 6224 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tggtggtgactgctgcctgg 149 |||||||||||||||||||| Sbjct: 1077 tggtggtgactgctgcctgg 1096 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,618,960 Number of Sequences: 3902068 Number of extensions: 4618960 Number of successful extensions: 97197 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96068 Number of HSP's gapped (non-prelim): 1129 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
