>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  311 bits (157), Expect = 9e-82
 Identities = 303/351 (86%), Gaps = 3/351 (0%)
 Strand = Plus / Plus

                                                                            
Query: 5        aatggcaactactctgaaaagattggcctcaagaagttgcttgacgacaatgacatcccg 64
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 10883755 aatggcaactactctgaaaagattggcctcaagaagtggcttgacgacaatgacatcccc 10883814

                                                                            
Query: 65       ggcttggtggagcagtactcggggaagctcgtcgaaaccgtctgggagcaggtagaccaa 124
                |||||||| || ||||| || | |||||||  ||| ||||| ||||||||| |||| || 
Sbjct: 10883815 ggcttggttgatcagtattccgcgaagctctacgataccgtgtgggagcagatagatcag 10883874

                                                                            
Query: 125      ttggctgtacaatacaaccttactgatttcactagtggattcaagcacttcttgatcacc 184
                || || || || ||||||||||| ||||||||||| ||||||  ||| |||||||||| |
Sbjct: 10883875 ttagcagtgcagtacaaccttaccgatttcactagcggattccggcatttcttgatcagc 10883934

                                                                            
Query: 185      caatcagt---cccatctggtgccaagagcaaggagctcatcacctctggaccgcacccc 241
                ||||||||   |||||||||||| ||| |||||||||||||||| || ||||| ||||| 
Sbjct: 10883935 caatcagttgacccatctggtgcaaagggcaaggagctcatcacatccggaccacacccg 10883994

                                                                            
Query: 242      tactcgctaaagctgcaggccattacgctgcgtgtgaagaagagggagtggctggagatc 301
                |||||| | ||||| ||||  ||| ||  || ||||||||| ||||||||| |||| || 
Sbjct: 10883995 tactcgatgaagctacaggttattgcgaagcatgtgaagaacagggagtggatggacatt 10884054

                                                                   
Query: 302      tacaaggagctggactcattcttcagggagctgttaatcacaagggaggat 352
                |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 10884055 tacagggagctggactcattctttagggagctgttaatcacaagggaggat 10884105

>dbj|AP005413.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0055N24
          Length = 142702

 Score =  311 bits (157), Expect = 9e-82
 Identities = 303/351 (86%), Gaps = 3/351 (0%)
 Strand = Plus / Plus

                                                                          
Query: 5      aatggcaactactctgaaaagattggcctcaagaagttgcttgacgacaatgacatcccg 64
              ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| 
Sbjct: 110121 aatggcaactactctgaaaagattggcctcaagaagtggcttgacgacaatgacatcccc 110180

                                                                          
Query: 65     ggcttggtggagcagtactcggggaagctcgtcgaaaccgtctgggagcaggtagaccaa 124
              |||||||| || ||||| || | |||||||  ||| ||||| ||||||||| |||| || 
Sbjct: 110181 ggcttggttgatcagtattccgcgaagctctacgataccgtgtgggagcagatagatcag 110240

                                                                          
Query: 125    ttggctgtacaatacaaccttactgatttcactagtggattcaagcacttcttgatcacc 184
              || || || || ||||||||||| ||||||||||| ||||||  ||| |||||||||| |
Sbjct: 110241 ttagcagtgcagtacaaccttaccgatttcactagcggattccggcatttcttgatcagc 110300

                                                                          
Query: 185    caatcagt---cccatctggtgccaagagcaaggagctcatcacctctggaccgcacccc 241
              ||||||||   |||||||||||| ||| |||||||||||||||| || ||||| ||||| 
Sbjct: 110301 caatcagttgacccatctggtgcaaagggcaaggagctcatcacatccggaccacacccg 110360

                                                                          
Query: 242    tactcgctaaagctgcaggccattacgctgcgtgtgaagaagagggagtggctggagatc 301
              |||||| | ||||| ||||  ||| ||  || ||||||||| ||||||||| |||| || 
Sbjct: 110361 tactcgatgaagctacaggttattgcgaagcatgtgaagaacagggagtggatggacatt 110420

                                                                 
Query: 302    tacaaggagctggactcattcttcagggagctgttaatcacaagggaggat 352
              |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 110421 tacagggagctggactcattctttagggagctgttaatcacaagggaggat 110471

>gb|AC022775.16| Mus musculus chromosome 15, clone RP23-71O17, complete sequence
          Length = 223532

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    ccaatcagtcccatctggtgc 204
              |||||||||||||||||||||
Sbjct: 198936 ccaatcagtcccatctggtgc 198916

>gb|AC160559.5| Mus musculus BAC clone RP24-404N24 from chromosome 10, complete
             sequence
          Length = 157670

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 201   gtgccaagagcaaggagctca 221
             |||||||||||||||||||||
Sbjct: 86132 gtgccaagagcaaggagctca 86112

>gb|AC096670.1| Homo sapiens BAC clone RP11-438K19 from 2, complete sequence
          Length = 181497

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 211   caaggagctcatcacctctgg 231
             |||||||||||||||||||||
Sbjct: 42661 caaggagctcatcacctctgg 42681

>gb|AC168058.4| Mus musculus BAC clone RP24-134D11 from chromosome 10, complete
             sequence
          Length = 199406

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 201   gtgccaagagcaaggagctca 221
             |||||||||||||||||||||
Sbjct: 29561 gtgccaagagcaaggagctca 29581

>ref|XM_511935.1| PREDICTED: Pan troglodytes LOC455187 (LOC455187), mRNA
          Length = 3393

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 189 tgccaagagcaaggagctca 208

>gb|AF287967.1| Homo sapiens homeobox B7 (HOXB7) gene, partial cds; and homeobox B6
             (HOXB6), homeobox B5 (HOXB5), homeobox B4 (HOXB4), and
             homeobox B3 (HOXB3) genes, complete cds
          Length = 59339

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   tgccaagagcaaggagctca 221
             ||||||||||||||||||||
Sbjct: 55652 tgccaagagcaaggagctca 55671

>ref|NM_002146.4| Homo sapiens homeobox B3 (HOXB3), mRNA
          Length = 3627

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tgccaagagcaaggagctca 221
            ||||||||||||||||||||
Sbjct: 1047 tgccaagagcaaggagctca 1066

>ref|NM_010458.1| Mus musculus homeo box B3 (Hoxb3), mRNA
          Length = 1890

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 669 tgccaagagcaaggagctca 688

>gb|AC131756.3| Mus musculus BAC clone RP24-199J23 from chromosome 19, complete sequence
          Length = 175604

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 279    agaagagggagtggctggag 298
              ||||||||||||||||||||
Sbjct: 110295 agaagagggagtggctggag 110276

>gb|S35738.1|S35738S1 Hox-2.7=upstream reading frame of type II transcript {type II
           alternative transcript} [mice, mRNA, 1968 nt, segment 1
           of 2]
          Length = 1968

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 747 tgccaagagcaaggagctca 766

>emb|X66177.1|MMHOX27 M.musculus mRNA for Hox 2.7 protein
          Length = 1890

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 669 tgccaagagcaaggagctca 688

>ref|XM_503779.1| Yarrowia lipolytica CLIB122, YALI0E10417g predicted mRNA
          Length = 4038

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tgccaagagcaaggagctca 221
            ||||||||||||||||||||
Sbjct: 1920 tgccaagagcaaggagctca 1939

>emb|X16667.1|HSHOX2G Human HOX2G mRNA from the Hox2 locus
          Length = 1935

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 552 tgccaagagcaaggagctca 571

>gb|AC163742.4| Mus musculus BAC clone RP23-383K19 from chromosome 14, complete
             sequence
          Length = 199109

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 173   ttcttgatcacccaatcagt 192
             ||||||||||||||||||||
Sbjct: 86816 ttcttgatcacccaatcagt 86797

>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    tggtgccaagagcaaggagc 218
              ||||||||||||||||||||
Sbjct: 121722 tggtgccaagagcaaggagc 121741

>gb|AC160984.3| Mus musculus BAC clone RP23-260C12 from chromosome 14, complete
            sequence
          Length = 206110

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  ttcttgatcacccaatcagt 192
            ||||||||||||||||||||
Sbjct: 2590 ttcttgatcacccaatcagt 2609

>gb|AC103702.3| Homo sapiens chromosome 17, clone RP11-357H14, complete sequence
          Length = 187386

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    tgccaagagcaaggagctca 221
              ||||||||||||||||||||
Sbjct: 137213 tgccaagagcaaggagctca 137232

>dbj|AK027609.1| Homo sapiens cDNA FLJ14703 fis, clone NT2RP3000512, highly similar to
            Human HOX2G mRNA from the Hox2 locus
          Length = 2641

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tgccaagagcaaggagctca 221
            ||||||||||||||||||||
Sbjct: 1085 tgccaagagcaaggagctca 1104

>gb|AC116664.1| Papio hamadryas, clone RP41-57E23, complete sequence
          Length = 175388

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    tgccaagagcaaggagctca 221
              ||||||||||||||||||||
Sbjct: 166716 tgccaagagcaaggagctca 166735

>gb|S35628.1|S35628S1 Hox-2.7=homeobox containing [mice, mRNA, 1890 nt, segment 1 of 2]
          Length = 1890

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 669 tgccaagagcaaggagctca 688

>gb|AC021021.9| Homo sapiens BAC clone RP11-557N1 from 2, complete sequence
          Length = 169202

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   ggagctggactcattcttca 326
             ||||||||||||||||||||
Sbjct: 88004 ggagctggactcattcttca 87985

>gb|AC011194.15|AC011194 Mus musculus chromosome 11, clone RP23-196F5, complete sequence
          Length = 181320

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    tgccaagagcaaggagctca 221
              ||||||||||||||||||||
Sbjct: 140220 tgccaagagcaaggagctca 140239

>gb|AC009789.21|AC009789 Homo sapiens chromosome 17, clone RP11-361K8, complete sequence
          Length = 168215

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    tgccaagagcaaggagctca 221
              ||||||||||||||||||||
Sbjct: 141092 tgccaagagcaaggagctca 141111

>ref|XM_220893.3| PREDICTED: Rattus norvegicus homeo box B3 (predicted)
           (Hoxb3_predicted), mRNA
          Length = 1850

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 641 tgccaagagcaaggagctca 660

>dbj|AB056577.1| Mesocricetus auratus mRNA for homeobox B3, complete cds
          Length = 1275

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 tgccaagagcaaggagctca 221
           ||||||||||||||||||||
Sbjct: 189 tgccaagagcaaggagctca 208

>gb|U59298.1|HSU59298 Human hox homeobox transcription factor (HOXB3) mRNA, complete cds
          Length = 3103

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tgccaagagcaaggagctca 221
            ||||||||||||||||||||
Sbjct: 1638 tgccaagagcaaggagctca 1657

>emb|AL021707.2|HS508I15 Human DNA sequence from clone RP3-508I15 on chromosome 22q12-13,
             complete sequence
          Length = 131353

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 188   tcagtcccatctggtgccaagagc 211
             |||||||||||||||| |||||||
Sbjct: 88398 tcagtcccatctggtgacaagagc 88375

>gb|U02278.1|MMU02278 Mus musculus homeobox containing protein (Hox-B3 [2.7]) gene,
            complete cds
          Length = 3981

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tgccaagagcaaggagctca 221
            ||||||||||||||||||||
Sbjct: 1378 tgccaagagcaaggagctca 1397

>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 202     tgccaagagcaaggagctca 221
               ||||||||||||||||||||
Sbjct: 1292632 tgccaagagcaaggagctca 1292651

>emb|AL606824.13| Mouse DNA sequence from clone RP23-9G13 on chromosome 11, complete
             sequence
          Length = 247743

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   tgccaagagcaaggagctca 221
             ||||||||||||||||||||
Sbjct: 39477 tgccaagagcaaggagctca 39496


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,749,037
Number of Sequences: 3902068
Number of extensions: 2749037
Number of successful extensions: 47889
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47803
Number of HSP's gapped (non-prelim): 84
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)