ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25k10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 172 5e-40
2dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic D... 172 5e-40
3dbj|AK067622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 5e-40
4emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 1.3
5gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, comple... 42 1.3
6emb|AL390335.3|CNS06C7O Human chromosome 14 DNA sequence BAC R-7... 42 1.3
7ref|XM_536149.2| PREDICTED: Canis familiaris similar to flavin c... 40 5.2
8emb|AJ549085.1|AGA549085 Anopheles gambiae mRNA for thioredoxin ... 40 5.2
9gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.2
10ref|XM_310514.2| Anopheles gambiae str. PEST ENSANGP00000017329 ... 40 5.2
11dbj|AK115145.1| Ciona intestinalis cDNA, clone:cieg034n15, full ... 40 5.2 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  172 bits (87), Expect = 5e-40
 Identities = 273/335 (81%)
 Strand = Plus / Minus

                                                                            
Query: 43       ggtgtgagcggcctagcagcctgcaagcacgcgttagacaaggggttcagcccggtggta 102
                |||||||||||||||||||| ||||||||| |  | ||||| || |||| |||  | || 
Sbjct: 21387272 ggtgtgagcggcctagcagcatgcaagcactcactggacaaaggattcaacccaatcgtg 21387213

                                                                            
Query: 103      ttcgaggccgatgacaccatcggaggagtgtgggcgcataccttggagtcaacgaggctt 162
                ||||| || || ||||||||||| || || ||||| || |||||||||||||| ||||| 
Sbjct: 21387212 ttcgaagcagacgacaccatcggtggcgtctgggcacacaccttggagtcaacaaggctc 21387153

                                                                            
Query: 163      caggcgccaacgacatcgttccggttctcggacctggcgtggccggcgggcgtgaccgcg 222
                ||||| ||||| ||  | ||| ||||||| |||||||| ||||| ||    ||||| | |
Sbjct: 21387152 caggcaccaaccacggcattcaggttctcagacctggcatggccagcaactgtgacagag 21387093

                                                                            
Query: 223      acgtacccaggccaccgtcaagtcatggagtacctcaggttgtatgcacgtgagtttgac 282
                | ||||||| ||||  |  | |||||||||||||| ||||  |||||  | |||||||| 
Sbjct: 21387092 aagtacccaagccataggaaggtcatggagtacctgaggtcatatgccagcgagtttgat 21387033

                                                                            
Query: 283      ctcttaaagtgtatcaagttcaatagccaggtgcttggagttgaatactttggtgcaaac 342
                ||| | ||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 21387032 ctcctcaagtgcatcaggttcaatagccaggtgcttggagttgaataccttggtgcaacc 21386973

                                                   
Query: 343      gaggaagagattatggggtgggagcattggtctgg 377
                |||| |||||| |||  ||||||||| ||||||||
Sbjct: 21386972 gagggagagataatgcagtgggagcactggtctgg 21386938
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>dbj|AP005679.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OJ1210_A07
          Length = 131394

 Score =  172 bits (87), Expect = 5e-40
 Identities = 273/335 (81%)
 Strand = Plus / Minus

                                                                        
Query: 43   ggtgtgagcggcctagcagcctgcaagcacgcgttagacaaggggttcagcccggtggta 102
            |||||||||||||||||||| ||||||||| |  | ||||| || |||| |||  | || 
Sbjct: 4377 ggtgtgagcggcctagcagcatgcaagcactcactggacaaaggattcaacccaatcgtg 4318

                                                                        
Query: 103  ttcgaggccgatgacaccatcggaggagtgtgggcgcataccttggagtcaacgaggctt 162
            ||||| || || ||||||||||| || || ||||| || |||||||||||||| ||||| 
Sbjct: 4317 ttcgaagcagacgacaccatcggtggcgtctgggcacacaccttggagtcaacaaggctc 4258

                                                                        
Query: 163  caggcgccaacgacatcgttccggttctcggacctggcgtggccggcgggcgtgaccgcg 222
            ||||| ||||| ||  | ||| ||||||| |||||||| ||||| ||    ||||| | |
Sbjct: 4257 caggcaccaaccacggcattcaggttctcagacctggcatggccagcaactgtgacagag 4198

                                                                        
Query: 223  acgtacccaggccaccgtcaagtcatggagtacctcaggttgtatgcacgtgagtttgac 282
            | ||||||| ||||  |  | |||||||||||||| ||||  |||||  | |||||||| 
Sbjct: 4197 aagtacccaagccataggaaggtcatggagtacctgaggtcatatgccagcgagtttgat 4138

                                                                        
Query: 283  ctcttaaagtgtatcaagttcaatagccaggtgcttggagttgaatactttggtgcaaac 342
            ||| | ||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 4137 ctcctcaagtgcatcaggttcaatagccaggtgcttggagttgaataccttggtgcaacc 4078

                                               
Query: 343  gaggaagagattatggggtgggagcattggtctgg 377
            |||| |||||| |||  ||||||||| ||||||||
Sbjct: 4077 gagggagagataatgcagtgggagcactggtctgg 4043
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>dbj|AK067622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A19, full
           insert sequence
          Length = 1856

 Score =  172 bits (87), Expect = 5e-40
 Identities = 273/335 (81%)
 Strand = Plus / Plus

                                                                       
Query: 43  ggtgtgagcggcctagcagcctgcaagcacgcgttagacaaggggttcagcccggtggta 102
           |||||||||||||||||||| ||||||||| |  | ||||| || |||| |||  | || 
Sbjct: 60  ggtgtgagcggcctagcagcatgcaagcactcactggacaaaggattcaacccaatcgtg 119

                                                                       
Query: 103 ttcgaggccgatgacaccatcggaggagtgtgggcgcataccttggagtcaacgaggctt 162
           ||||| || || ||||||||||| || || ||||| || |||||||||||||| ||||| 
Sbjct: 120 ttcgaagcagacgacaccatcggtggcgtctgggcacacaccttggagtcaacaaggctc 179

                                                                       
Query: 163 caggcgccaacgacatcgttccggttctcggacctggcgtggccggcgggcgtgaccgcg 222
           ||||| ||||| ||  | ||| ||||||| |||||||| ||||| ||    ||||| | |
Sbjct: 180 caggcaccaaccacggcattcaggttctcagacctggcatggccagcaactgtgacggag 239

                                                                       
Query: 223 acgtacccaggccaccgtcaagtcatggagtacctcaggttgtatgcacgtgagtttgac 282
           | ||||||| ||||  |  | |||||||||||||| ||||  |||||  | |||||||| 
Sbjct: 240 aagtacccaagccataggaaggtcatggagtacctgaggtcatatgccagcgagtttgat 299

                                                                       
Query: 283 ctcttaaagtgtatcaagttcaatagccaggtgcttggagttgaatactttggtgcaaac 342
           ||| | ||||| |||| ||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 300 ctcctcaagtgcatcaggttcaatagccaggtgcttggagttgaataccttggtgcaacc 359

                                              
Query: 343 gaggaagagattatggggtgggagcattggtctgg 377
           |||| |||||| |||  ||||||||| ||||||||
Sbjct: 360 gagggagagataatgcagtgggagcactggtctgg 394
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>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              7/17
          Length = 348813

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 317    ttggagttgaatactttggtg 337
              |||||||||||||||||||||
Sbjct: 188546 ttggagttgaatactttggtg 188566
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>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 346   gaagagattatggggtgggag 366
             |||||||||||||||||||||
Sbjct: 34832 gaagagattatggggtgggag 34812
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>emb|AL390335.3|CNS06C7O Human chromosome 14 DNA sequence BAC R-757K12 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176505

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 311    aggtgcttggagttgaatact 331
              |||||||||||||||||||||
Sbjct: 135028 aggtgcttggagttgaatact 135048
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>ref|XM_536149.2| PREDICTED: Canis familiaris similar to flavin containing
           monooxygenase 5 (LOC478994), mRNA
          Length = 1727

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 245 tcatggagtacctcaggttgtatg 268
           ||||||||||||||||| ||||||
Sbjct: 263 tcatggagtacctcaggatgtatg 286
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>emb|AJ549085.1|AGA549085 Anopheles gambiae mRNA for thioredoxin reductase (trxR gene),
           splice variant 2
          Length = 2219

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 acgtacccaggccaccgtca 242
           ||||||||||||||||||||
Sbjct: 698 acgtacccaggccaccgtca 717
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     cggcgggcgtgaccgcgacg 225
               ||||||||||||||||||||
Sbjct: 3174721 cggcgggcgtgaccgcgacg 3174702
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>ref|XM_310514.2| Anopheles gambiae str. PEST ENSANGP00000017329
           (ENSANGG00000014840), partial mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 223 acgtacccaggccaccgtca 242
           ||||||||||||||||||||
Sbjct: 69  acgtacccaggccaccgtca 88
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>dbj|AK115145.1| Ciona intestinalis cDNA, clone:cieg034n15, full insert sequence
          Length = 2004

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 171 aacgacatcgttccggttct 190
           ||||||||||||||||||||
Sbjct: 386 aacgacatcgttccggttct 405


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,253,775
Number of Sequences: 3902068
Number of extensions: 2253775
Number of successful extensions: 35882
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35808
Number of HSP's gapped (non-prelim): 71
length of query: 389
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 367
effective length of database: 17,147,199,772
effective search space: 6293022316324
effective search space used: 6293022316324
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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