ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25j24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, com... 44 0.48
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
3gb|AC106874.4| Homo sapiens BAC clone RP11-390E19 from 2, comple... 44 0.48
4dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.48
5gb|AC124027.2| Mus musculus chromosome X clone RP21-282L18 map q... 42 1.9
6gb|AC124026.2| Mus musculus chromosome X clone RP21-564N13 map q... 42 1.9
7gb|AC124020.2| Mus musculus chromosome X clone RP21-564N13 map q... 42 1.9
8emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chr... 42 1.9
9gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, comple... 42 1.9
10emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in... 42 1.9
11emb|X75939.1|ISMVCP Iris severe mosaic potyvirus gene for coat p... 42 1.9
12emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chro... 42 1.9
13gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, com... 40 7.5
14gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 7.5
15gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome... 40 7.5
16gb|AC110880.10| Mus musculus chromosome 7, clone RP24-456G3, com... 40 7.5
17gb|BT014752.1| Arabidopsis thaliana At2g07681 mRNA, complete cds 40 7.5
18gb|AC110092.4| Mus musculus BAC clone RP24-94E17 from chromosome... 40 7.5
19gb|AC142504.2| Mus musculus BAC clone RP24-132F22 from chromosom... 40 7.5
20gb|AC154670.2| Mus musculus BAC clone RP24-293L9 from chromosome... 40 7.5
21emb|CR936442.13| Zebrafish DNA sequence from clone DKEY-266F7 in... 40 7.5
22emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 i... 40 7.5
23gb|AC145941.2| Pan troglodytes BAC clone RP43-40O7 from 7, compl... 40 7.5
24gb|AC012061.4| Homo sapiens BAC clone CTD-2052D1 from 7, complet... 40 7.5
25gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's H... 40 7.5
26gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence 40 7.5
27emb|AL138837.12| Human DNA sequence from clone RP1-149P10 on chr... 40 7.5
28emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chrom... 40 7.5
29ref|XM_791418.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
30ref|XM_789412.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.5
31gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome... 40 7.5
32gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, comp... 40 7.5
33gb|AE014177.1| Mus musculus piebald deletion region section 5 of... 40 7.5
34gb|AC117452.2| Homo sapiens 3 BAC RP11-341J3 (Roswell Park Cance... 40 7.5
35gb|AC115285.2| Homo sapiens chromosome 1 clone RP4-580O19, compl... 40 7.5
36gb|AC119729.5| Homo sapiens 3 BAC RP11-36I16 (Roswell Park Cance... 40 7.5
37dbj|AK125841.1| Homo sapiens cDNA FLJ43853 fis, clone TESTI40068... 40 7.5
38gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Ca... 40 7.5
39gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomi... 40 7.5
40gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genom... 40 7.5
41gb|AC019077.9| Homo sapiens BAC clone RP11-323J4 from 4, complet... 40 7.5
42gb|AC155719.11| Mus musculus 6 BAC RP24-236K6 (Roswell Park Canc... 40 7.5
43emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in... 40 7.5
44gb|AC078961.23| Homo sapiens 4 BAC RP11-486H4 (Roswell Park Canc... 40 7.5
45gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosom... 40 7.5
46gb|AC159741.2| Mus musculus BAC clone RP23-178B21 from chromosom... 40 7.5
47gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cance... 40 7.5
48gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Can... 40 7.5
49gb|AC147288.4| Pan troglodytes BAC clone RP43-74L22 from chromos... 40 7.5
50gb|AC017035.6| Homo sapiens BAC clone RP11-310J20 from 2, comple... 40 7.5
51gb|AC007282.4| Homo sapiens BAC clone RP11-484N9 from 2, complet... 40 7.5
52gb|AC146754.3| Ornithorhynchus anatinus clone OA_Bb-256M12, comp... 40 7.5
53gb|AC020591.7| Homo sapiens BAC clone RP11-150O15 from 2, comple... 40 7.5
54ref|XM_231550.3| PREDICTED: Rattus norvegicus RNA binding motif ... 40 7.5
55emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 i... 40 7.5
56emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, c... 40 7.5
57emb|BX248097.7| Zebrafish DNA sequence from clone CH211-232M8 in... 40 7.5
58gb|AC121887.4| Mus musculus BAC clone RP24-142B15 from 5, comple... 40 7.5
59emb|BX897712.12| Zebrafish DNA sequence from clone CH211-146A9 i... 40 7.5
60emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome 40 7.5
61gb|AC114602.16| Mus musculus chromosome 8, clone RP23-339B16, co... 40 7.5
62emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in ... 40 7.5
63emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 ... 40 7.5
64gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome... 40 7.5
65emb|AL731767.18| Mouse DNA sequence from clone RP23-338L13 on ch... 40 7.5
66emb|AL691498.15| Mouse DNA sequence from clone RP23-16B21 on chr... 40 7.5
67emb|AL606824.13| Mouse DNA sequence from clone RP23-9G13 on chro... 40 7.5 
>gb|AC113320.7| Mus musculus chromosome 6, clone RP23-445E16, complete sequence
          Length = 267708

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 24     tacataatatatttgtgtatat 45
              ||||||||||||||||||||||
Sbjct: 208918 tacataatatatttgtgtatat 208897
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 23       atacataatatatttgtgtatatgaa 48
                |||||||||||| |||||||||||||
Sbjct: 12053277 atacataatataattgtgtatatgaa 12053302
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>gb|AC106874.4| Homo sapiens BAC clone RP11-390E19 from 2, complete sequence
          Length = 121348

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 24     tacataatatatttgtgtatatgaac 49
              |||||||||||| |||||||||||||
Sbjct: 118125 tacataatatatatgtgtatatgaac 118100
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>dbj|AP005422.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0441A12
          Length = 185437

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 23     atacataatatatttgtgtatatgaa 48
              |||||||||||| |||||||||||||
Sbjct: 157757 atacataatataattgtgtatatgaa 157782
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>gb|AC124027.2| Mus musculus chromosome X clone RP21-282L18 map qA7.2, complete
             sequence
          Length = 147432

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 396   gcatatatggagagcatatct 416
             |||||||||||||||||||||
Sbjct: 50143 gcatatatggagagcatatct 50163
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>gb|AC124026.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete
             sequence
          Length = 178239

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 396   gcatatatggagagcatatct 416
             |||||||||||||||||||||
Sbjct: 23513 gcatatatggagagcatatct 23533
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>gb|AC124020.2| Mus musculus chromosome X clone RP21-564N13 map qA7.2, complete
             sequence
          Length = 155466

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 396   gcatatatggagagcatatct 416
             |||||||||||||||||||||
Sbjct: 15569 gcatatatggagagcatatct 15589
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>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a
             phospholipase A2, group XIIA (Pla2g12) pseudogene,
             complete sequence
          Length = 200646

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 21    acatacataatatatttgtgtatat 45
             |||||||||||||||| ||||||||
Sbjct: 95319 acatacataatatattcgtgtatat 95295
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>gb|AC009496.3| Homo sapiens BAC clone RP11-500G18 from 2, complete sequence
          Length = 96843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 21    acatacataatatatttgtgtatat 45
             ||||||||||||||| |||||||||
Sbjct: 67778 acatacataatatatatgtgtatat 67802
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>emb|BX548066.3| Zebrafish DNA sequence from clone CH211-226F1 in linkage group 20,
             complete sequence
          Length = 185926

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 25    acataatatatttgtgtatat 45
             |||||||||||||||||||||
Sbjct: 91150 acataatatatttgtgtatat 91170
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>emb|X75939.1|ISMVCP Iris severe mosaic potyvirus gene for coat protein
          Length = 2510

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 19   aaacatacataatatatttgt 39
            |||||||||||||||||||||
Sbjct: 2218 aaacatacataatatatttgt 2198
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>emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chromosome X, complete
              sequence
          Length = 160065

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 396    gcatatatggagagcatatct 416
              |||||||||||||||||||||
Sbjct: 151511 gcatatatggagagcatatct 151531
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>gb|AC138355.17| Mus musculus chromosome 8, clone RP24-281G1, complete sequence
          Length = 154808

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 411    atatctacagaagagaaaaa 430
              ||||||||||||||||||||
Sbjct: 129872 atatctacagaagagaaaaa 129891
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 240     cccctgctttgttcgatttggtag 263
               ||||||||||||||||| ||||||
Sbjct: 2657217 cccctgctttgttcgatgtggtag 2657240
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>gb|AC159266.3| Mus musculus BAC clone RP24-64D24 from chromosome 8, complete sequence
          Length = 212727

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   ctccccctcccctgctttgt 251
             ||||||||||||||||||||
Sbjct: 35884 ctccccctcccctgctttgt 35865
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>gb|AC110880.10| Mus musculus chromosome 7, clone RP24-456G3, complete sequence
          Length = 162685

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    acaaattcagaaatcaacac 86
             ||||||||||||||||||||
Sbjct: 72586 acaaattcagaaatcaacac 72567
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>gb|BT014752.1| Arabidopsis thaliana At2g07681 mRNA, complete cds
          Length = 1201

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 233 tccccctcccctgctttgtt 252
           ||||||||||||||||||||
Sbjct: 273 tccccctcccctgctttgtt 254
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>gb|AC110092.4| Mus musculus BAC clone RP24-94E17 from chromosome 14, complete sequence
          Length = 184368

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 510   ttgtttttgggtttgttcattttt 533
             ||||||||||||||||||| ||||
Sbjct: 11347 ttgtttttgggtttgttcagtttt 11324
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>gb|AC142504.2| Mus musculus BAC clone RP24-132F22 from chromosome 9, complete sequence
          Length = 174426

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   ggcggtgcaggacacagcca 342
             ||||||||||||||||||||
Sbjct: 15719 ggcggtgcaggacacagcca 15700
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>gb|AC154670.2| Mus musculus BAC clone RP24-293L9 from chromosome 14, complete sequence
          Length = 163908

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 510    ttgtttttgggtttgttcattttt 533
              ||||||||||||||||||| ||||
Sbjct: 138512 ttgtttttgggtttgttcagtttt 138489
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>emb|CR936442.13| Zebrafish DNA sequence from clone DKEY-266F7 in linkage group 19,
            complete sequence
          Length = 244065

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  acagaagagaaaaaactcga 436
            ||||||||||||||||||||
Sbjct: 2481 acagaagagaaaaaactcga 2462
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>emb|CR356243.16| Zebrafish DNA sequence from clone CH211-209O4 in linkage group 6,
              complete sequence
          Length = 216472

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     cataatatatttgtgtatat 45
              ||||||||||||||||||||
Sbjct: 192509 cataatatatttgtgtatat 192528
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>gb|AC145941.2| Pan troglodytes BAC clone RP43-40O7 from 7, complete sequence
          Length = 172479

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ataatatatttgtgtatatg 46
             ||||||||||||||||||||
Sbjct: 58097 ataatatatttgtgtatatg 58078
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>gb|AC012061.4| Homo sapiens BAC clone CTD-2052D1 from 7, complete sequence
          Length = 81670

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ataatatatttgtgtatatg 46
             ||||||||||||||||||||
Sbjct: 72408 ataatatatttgtgtatatg 72389
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>gb|AC096035.6| Rattus norvegicus 4 BAC CH230-16M16 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 228433

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    catacataatatatttgtgtatat 45
             |||| |||||||||||||||||||
Sbjct: 71415 cataaataatatatttgtgtatat 71438
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>gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence
          Length = 226331

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 197  tgtatgtgttatattaccaa 216
            ||||||||||||||||||||
Sbjct: 1271 tgtatgtgttatattaccaa 1290
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>emb|AL138837.12| Human DNA sequence from clone RP1-149P10 on chromosome 1 Contains the
             5' end of a variant of the PHC2 gene for polyhomeotic-like
             2 (Drosophila) and the 5' end of the ZNF31 gene for zinc
             finger protein 31 (KOX 29), complete sequence
          Length = 98873

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   tctacagaagagaaaaaact 433
             ||||||||||||||||||||
Sbjct: 81749 tctacagaagagaaaaaact 81730
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>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3
             Contains a gene for a novel protein similar to a
             glycosyltransferase, the gene for protein translocation
             complex beta (SEC61B), a novel gene for a protein similar
             to cytokeratin 8 (KRT8)and a CpG island, complete sequence
          Length = 197169

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    atacataatatatttgtgtatatg 46
             ||||||||||||| ||||||||||
Sbjct: 11660 atacataatatatatgtgtatatg 11637
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>ref|XM_791418.1| PREDICTED: Strongylocentrotus purpuratus similar to Low-density
            lipoprotein receptor-related protein 2 precursor
            (Megalin) (Glycoprotein 330) (gp330) (LOC591871), mRNA
          Length = 4542

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  tgttttgctccccctcccct 244
            ||||||||||||||||||||
Sbjct: 4417 tgttttgctccccctcccct 4398
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>ref|XM_789412.1| PREDICTED: Strongylocentrotus purpuratus similar to low density
            lipoprotein receptor-related protein 2 (LOC589778), mRNA
          Length = 4548

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 225  tgttttgctccccctcccct 244
            ||||||||||||||||||||
Sbjct: 4519 tgttttgctccccctcccct 4500
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>gb|AC152411.5| Mus musculus BAC clone RP24-87M19 from chromosome 10, complete sequence
          Length = 204973

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     catacataatatatttgtgt 41
              ||||||||||||||||||||
Sbjct: 108497 catacataatatatttgtgt 108478
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>gb|AC091960.4| Homo sapiens chromosome 5 clone RP11-450M19, complete sequence
          Length = 172689

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 515    tttgggtttgttcatttttc 534
              ||||||||||||||||||||
Sbjct: 147013 tttgggtttgttcatttttc 147032
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>gb|AE014177.1| Mus musculus piebald deletion region section 5 of 11 of the
           complete sequence
          Length = 400029

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 510 ttgtttttgggtttgttcattttt 533
           ||||||||||||||||||| ||||
Sbjct: 174 ttgtttttgggtttgttcagtttt 197
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>gb|AC117452.2| Homo sapiens 3 BAC RP11-341J3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193285

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 511    tgtttttgggtttgttcatttttc 534
              |||||||| |||||||||||||||
Sbjct: 152994 tgtttttgtgtttgttcatttttc 153017
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>gb|AC115285.2| Homo sapiens chromosome 1 clone RP4-580O19, complete sequence
          Length = 124786

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 414 tctacagaagagaaaaaact 433
           ||||||||||||||||||||
Sbjct: 242 tctacagaagagaaaaaact 223
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>gb|AC119729.5| Homo sapiens 3 BAC RP11-36I16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125847

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 511   tgtttttgggtttgttcatttttc 534
             |||||||| |||||||||||||||
Sbjct: 12072 tgtttttgtgtttgttcatttttc 12095
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>dbj|AK125841.1| Homo sapiens cDNA FLJ43853 fis, clone TESTI4006819, moderately
           similar to Alpha enolase (EC 4.2.1.11)
          Length = 4435

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 30  atatatttgtgtatatgaac 49
           ||||||||||||||||||||
Sbjct: 116 atatatttgtgtatatgaac 135
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>gb|AC153370.13| Mus musculus 10 BAC RP23-281M13 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 213550

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   ttttgggtttgttcattttt 533
             ||||||||||||||||||||
Sbjct: 33227 ttttgggtttgttcattttt 33246
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>gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomic sequence, complete
             sequence
          Length = 94302

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   tccccctcccctgctttgtt 252
             ||||||||||||||||||||
Sbjct: 67768 tccccctcccctgctttgtt 67749



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   tccccctcccctgctttgtt 252
             ||||||||||||||||||||
Sbjct: 18135 tccccctcccctgctttgtt 18154
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>gb|AC007143.5| Arabidopsis thaliana chromosome 2 BAC T17H1 genomic sequence, complete
             sequence
          Length = 75812

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   tccccctcccctgctttgtt 252
             ||||||||||||||||||||
Sbjct: 33601 tccccctcccctgctttgtt 33582
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>gb|AC019077.9| Homo sapiens BAC clone RP11-323J4 from 4, complete sequence
          Length = 190437

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cttttaatagtgtaaagagg 195
              ||||||||||||||||||||
Sbjct: 182047 cttttaatagtgtaaagagg 182066
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>gb|AC155719.11| Mus musculus 6 BAC RP24-236K6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 179419

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 353   cttcttccactccgatgaatccag 376
             |||||||||||||||||| |||||
Sbjct: 38339 cttcttccactccgatgactccag 38362
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>emb|BX936429.8| Zebrafish DNA sequence from clone DKEY-224E22 in linkage group 18,
             complete sequence
          Length = 158832

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    gaacttgtacttaggtacaa 70
             ||||||||||||||||||||
Sbjct: 28920 gaacttgtacttaggtacaa 28901
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>gb|AC078961.23| Homo sapiens 4 BAC RP11-486H4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 179762

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   cttttaatagtgtaaagagg 195
             ||||||||||||||||||||
Sbjct: 42076 cttttaatagtgtaaagagg 42057
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>gb|AC126267.3| Mus musculus BAC clone RP23-191M12 from chromosome 9, complete sequence
          Length = 218974

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    catgcacaaacatacataatatat 35
             |||||||| |||||||||||||||
Sbjct: 94580 catgcacacacatacataatatat 94603
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>gb|AC159741.2| Mus musculus BAC clone RP23-178B21 from chromosome 9, complete sequence
          Length = 185878

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   ggcggtgcaggacacagcca 342
             ||||||||||||||||||||
Sbjct: 53731 ggcggtgcaggacacagcca 53750
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>gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 232002

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 353    cttcttccactccgatgaatccag 376
              |||||||||||||||||| |||||
Sbjct: 228626 cttcttccactccgatgactccag 228649
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>gb|AC158599.7| Mus musculus 10 BAC RP23-122O12 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 191825

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 514   ttttgggtttgttcattttt 533
             ||||||||||||||||||||
Sbjct: 70567 ttttgggtttgttcattttt 70548
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>gb|AC147288.4| Pan troglodytes BAC clone RP43-74L22 from chromosome 7, complete
             sequence
          Length = 140079

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ataatatatttgtgtatatg 46
             ||||||||||||||||||||
Sbjct: 57994 ataatatatttgtgtatatg 57975
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>gb|AC017035.6| Homo sapiens BAC clone RP11-310J20 from 2, complete sequence
          Length = 154867

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   catatctacagaagagaaaa 429
             ||||||||||||||||||||
Sbjct: 39026 catatctacagaagagaaaa 39007
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>gb|AC007282.4| Homo sapiens BAC clone RP11-484N9 from 2, complete sequence
          Length = 182632

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   atatatttgtgtatatgaac 49
            ||||||||||||||||||||
Sbjct: 1303 atatatttgtgtatatgaac 1322
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>gb|AC146754.3| Ornithorhynchus anatinus clone OA_Bb-256M12, complete sequence
          Length = 45326

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 291   gttccctcatgcactttctaatgc 314
             |||||||||||||||||| |||||
Sbjct: 40079 gttccctcatgcactttcaaatgc 40102
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>gb|AC020591.7| Homo sapiens BAC clone RP11-150O15 from 2, complete sequence
          Length = 59623

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 509   cttgtttttgggtttgttcatttttcta 536
             |||||||||||||||||| |||| ||||
Sbjct: 37703 cttgtttttgggtttgttgatttctcta 37676
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>ref|XM_231550.3| PREDICTED: Rattus norvegicus RNA binding motif protein 28 (predicted)
            (Rbm28_predicted), mRNA
          Length = 2984

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 22   catacataatatatttgtgtatat 45
            |||| |||||||||||||||||||
Sbjct: 2626 cataaataatatatttgtgtatat 2603
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>emb|BX276117.5| Zebrafish DNA sequence from clone CH211-112K18 in linkage group 17,
              complete sequence
          Length = 181677

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 417    acagaagagaaaaaactcga 436
              ||||||||||||||||||||
Sbjct: 171611 acagaagagaaaaaactcga 171592
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>emb|BX005079.6| Zebrafish DNA sequence from clone CH211-176D9, complete sequence
          Length = 157845

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 17     acaaacatacataatatatt 36
              ||||||||||||||||||||
Sbjct: 107869 acaaacatacataatatatt 107888
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>emb|BX248097.7| Zebrafish DNA sequence from clone CH211-232M8 in linkage group 14,
             complete sequence
          Length = 171333

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    atacataatatatttgtgtatatg 46
             ||||||||||||| ||||||||||
Sbjct: 48464 atacataatatatatgtgtatatg 48441
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>gb|AC121887.4| Mus musculus BAC clone RP24-142B15 from 5, complete sequence
          Length = 234919

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 46    gaactgaacttgtacttaggtaca 69
             |||||||| |||||||||||||||
Sbjct: 60019 gaactgaatttgtacttaggtaca 59996
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>emb|BX897712.12| Zebrafish DNA sequence from clone CH211-146A9 in linkage group 4,
             complete sequence
          Length = 119220

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    tacataatatatttgtgtat 43
             ||||||||||||||||||||
Sbjct: 85033 tacataatatatttgtgtat 85014
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>emb|Y08501.2|MIATGENA Arabidopsis thaliana mitochondrial genome
          Length = 366924

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    tccccctcccctgctttgtt 252
              ||||||||||||||||||||
Sbjct: 240841 tccccctcccctgctttgtt 240860
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>gb|AC114602.16| Mus musculus chromosome 8, clone RP23-339B16, complete sequence
          Length = 196024

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    atatctacagaagagaaaaa 430
              ||||||||||||||||||||
Sbjct: 185866 atatctacagaagagaaaaa 185847
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>emb|BX927414.24| Zebrafish DNA sequence from clone DKEYP-5A5 in linkage group 10, complete
              sequence
          Length = 126112

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 13     atgcacaaacatacataatatatt 36
              ||||||| ||||||||||||||||
Sbjct: 111761 atgcacacacatacataatatatt 111738
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>emb|CR548631.18| Zebrafish DNA sequence from clone CH211-117I20 in linkage group 6,
             complete sequence
          Length = 169904

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    cataatatatttgtgtatat 45
             ||||||||||||||||||||
Sbjct: 31045 cataatatatttgtgtatat 31064
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>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence
          Length = 212724

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 232    ctccccctcccctgctttgt 251
              ||||||||||||||||||||
Sbjct: 210346 ctccccctcccctgctttgt 210327
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>emb|AL731767.18| Mouse DNA sequence from clone RP23-338L13 on chromosome 2, complete
             sequence
          Length = 135926

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    ataatatatttgtgtatatg 46
             ||||||||||||||||||||
Sbjct: 16794 ataatatatttgtgtatatg 16813
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>emb|AL691498.15| Mouse DNA sequence from clone RP23-16B21 on chromosome 2, complete
             sequence
          Length = 122757

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    aatatatttgtgtatatgaa 48
             ||||||||||||||||||||
Sbjct: 26156 aatatatttgtgtatatgaa 26175
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>emb|AL606824.13| Mouse DNA sequence from clone RP23-9G13 on chromosome 11, complete
              sequence
          Length = 247743

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    ccaggggcaccaagagttgg 498
              ||||||||||||||||||||
Sbjct: 109395 ccaggggcaccaagagttgg 109414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,732,547
Number of Sequences: 3902068
Number of extensions: 6732547
Number of successful extensions: 153986
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153733
Number of HSP's gapped (non-prelim): 253
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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