ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25i22 |
|---|---|
| Clone Library Name | barley_pub |
>RIR1_HCMVA (P16782) Ribonucleoside-diphosphate reductase large chain (EC| 1.17.4.1) (Ribonucleotide reductase) Length = 906 Score = 33.1 bits (74), Expect = 0.27 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -1 Query: 319 TRRRSELPVQRSLGFEAL*WGKLCLQVVFEAQKWWHSGSF**L-PLH 182 TRR +L V R L EA+ WG L + A +WW + L PLH Sbjct: 625 TRRYFDLSVLRELVTEAVVWGNARLDALMSASEWWVESALEKLRPLH 671
>CENPB_SHEEP (P49451) Major centromere autoantigen B (Centromere protein B)| (CENP-B) (Fragment) Length = 239 Score = 31.2 bits (69), Expect = 1.0 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREED 116 +E EEEG+G +E ++G E+E+ G E+ Sbjct: 54 EEEEEEEGEGEEEEEEDGEEEEEAGEGEE 82
>CENPB_MOUSE (P27790) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 599 Score = 30.8 bits (68), Expect = 1.3 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGR-EEDGHTE 128 +E EEEG+G +E +E +E+GG EE+G E Sbjct: 416 EEEEEEEGEGEEEEEEEEEGEEEGGEGEEEGEEE 449
>GMHB_HELPJ (Q9ZKY8) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 174 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 312 EDLSFQCNGVWDLRHYDGENCACR 241 ++L F +G++ RH ENCACR Sbjct: 81 KELGFNLDGIYFCRHAPEENCACR 104
>GMHB_HELPY (O25531) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 173 Score = 30.0 bits (66), Expect = 2.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 312 EDLSFQCNGVWDLRHYDGENCACR 241 ++L F +G++ RH ENCACR Sbjct: 80 KELGFNLDGIYFCRHAPEENCACR 103
>KR415_HUMAN (Q9BYQ5) Keratin-associated protein 4-15 (Keratin-associated| protein 4.15) (Ultrahigh sulfur keratin-associated protein 4.15) (Fragment) Length = 193 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -1 Query: 412 CICHPCRPQFCSALVFQQPQCWWQCTPSHLQT 317 C+ CRPQ C ++ Q C C PS QT Sbjct: 29 CVSSCCRPQCCQSVCCQPTCCRPSCCPSCCQT 60
>TRME_CHLTR (O84704) Probable tRNA modification GTPase trmE| Length = 444 Score = 29.6 bits (65), Expect = 2.9 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +1 Query: 202 MSRCATISAPRTPPASTVFPIIVPQIPDSVALEAQIFSGS 321 M R TI+A TPP I+ PD++++ +IFSG+ Sbjct: 1 MLRNDTITAIATPPGEGSIAIVRVSGPDAISISDRIFSGN 40
>NFL_XENLA (P35616) Neurofilament triplet L protein (Neurofilament light| polypeptide) (NF-L) Length = 543 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREE 113 +E+ EEEG+G +E+ +EG E E+ EE Sbjct: 467 EEAAEEEGEGGEEAEEEGEEGEEAKEEE 494
>PAQR9_MOUSE (Q6TCG2) Progestin and adipoQ receptor family member 9 (Progestin| and adipoQ receptor family member IX) Length = 375 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 5/55 (9%) Frame = +1 Query: 199 RMSRCATISAPRTPPASTVFPII-VPQIPDSVALEAQIFSG----SANATECTAT 348 R S A+ SAPR+P A+T P++ ++PD +E I SG A EC A+ Sbjct: 21 RRSHPASASAPRSPSAATTKPLLRWDEVPDDF-VECFILSGYRRLPCTAQECLAS 74
>GPRK2_DROME (P32866) G protein-coupled receptor kinase 2 (EC 2.7.11.16)| Length = 714 Score = 29.3 bits (64), Expect = 3.8 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%) Frame = +3 Query: 24 GCDESHEEEGKGTKESCKEGHED-EKGGREEDG 119 G SH+++G + + C+EGH+D EKGG E G Sbjct: 194 GNGSSHQDDGDESVK-CQEGHDDAEKGGGGEGG 225
>CENPB_HUMAN (P07199) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 599 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREED 116 +E EEEG+G +E + E+E+GG E+ Sbjct: 413 EEEEEEEGEGEEEEEEGEEEEEEGGEGEE 441
>NFM_RABIT (P54938) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) (Fragment) Length = 644 Score = 28.9 bits (63), Expect = 5.0 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 6/42 (14%) Frame = +3 Query: 21 QGCDESHEEEGKGTK-ESCKEGHEDEKG-----GREEDGHTE 128 +G +E EEE +G K + +EG +++G G +E+G TE Sbjct: 317 EGQEEEEEEEDEGVKSDQAEEGGSEKEGSSKNEGEQEEGETE 358
>NCOA3_HUMAN (Q9Y6Q9) Nuclear receptor coactivator 3 (EC 2.3.1.48) (NCoA-3)| (Thyroid hormone receptor activator molecule 1) (TRAM-1) (ACTR) (Receptor-associated coactivator 3) (RAC-3) (Amplified in breast cancer-1 protein) (AIB-1) (Steroid receptor coacti Length = 1424 Score = 28.9 bits (63), Expect = 5.0 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 54 KGTKESCKEGHEDEKGGREEDGHTEFLQ 137 K +KES EG E+++G E GH + LQ Sbjct: 596 KESKESSVEGAENQRGPLESKGHKKLLQ 623
>CENPB_CRIGR (P48988) Major centromere autoantigen B (Centromere protein B)| (CENP-B) Length = 606 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREED 116 +E EEEG+G +E +E +E+GG E+ Sbjct: 416 EEEEEEEGEGEEEEEEEEEGEEEGGEGEE 444
>NFL_HUMAN (P07196) Neurofilament triplet L protein (68 kDa neurofilament| protein) (Neurofilament light polypeptide) (NF-L) Length = 542 Score = 28.9 bits (63), Expect = 5.0 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREEDG 119 +E EE + KE +E E+E+GG E+G Sbjct: 487 EEEAAEEEEAAKEESEEAKEEEEGGEGEEG 516
>NFM_MOUSE (P08553) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 848 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 13/49 (26%) Frame = +3 Query: 33 ESHEEEGKGTKESCKEGHED-------------EKGGREEDGHTEFLQG 140 E+ EEE +G KE +EG E+ E+GG E++G +E +G Sbjct: 508 EAKEEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDEG 556
>HSP77_HUMAN (P48741) Heat shock 70 kDa protein 7 (Heat shock 70 kDa protein B)| (Fragment) Length = 247 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 408 FATHADLNSVQHWFFNNRNAGGSALRRICRPGEDLSF 298 FA + ++HW F + GG R+C GED +F Sbjct: 80 FADTTVQSDMKHWPFKVVSGGGKPKVRVCYRGEDKTF 116
>NCOR1_XENLA (Q8QG78) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (xN-CoR)| Length = 2498 Score = 28.5 bits (62), Expect = 6.6 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREEDG 119 DE EEE K KE +EG +D+ EDG Sbjct: 524 DERREEEEKEEKEELREGAKDKIDAVAEDG 553
>GMHB_NEIMB (Q9JXI5) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 187 Score = 28.5 bits (62), Expect = 6.6 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -2 Query: 297 QCNGVWDLRHYDGENCACR 241 + NG+W H D +NC CR Sbjct: 82 EINGIWFCPHTDADNCNCR 100
>GMHB_NEIMA (Q9JWE9) D,D-heptose 1,7-bisphosphate phosphatase (EC 3.1.3.-)| (D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase) Length = 187 Score = 28.5 bits (62), Expect = 6.6 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -2 Query: 297 QCNGVWDLRHYDGENCACR 241 + NG+W H D +NC CR Sbjct: 82 EINGIWFCPHTDADNCNCR 100
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2158 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3 Query: 36 SHEEEGKGTKESCKEGHEDEKGGREEDGHTEFLQG 140 S EE+G+ + E EGH+D + E+ T+ +G Sbjct: 342 SDEEDGRDSDEEGAEGHKDSQSAAAEEPETDGKKG 376
>SYN2_RAT (Q63537) Synapsin-2 (Synapsin II)| Length = 586 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 232 RTPPASTVFPIIVPQIPDSVALEAQIFSGSANATECTATSIAVVEKP 372 R PPA P PQ + ++ + FS + A + TA S +V+ P Sbjct: 59 RPPPAQAPAPQPAPQPAPTPSVGSSFFSSLSQAVKQTAASAGLVDAP 105
>SYN2_MOUSE (Q64332) Synapsin-2 (Synapsin II)| Length = 586 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +1 Query: 232 RTPPASTVFPIIVPQIPDSVALEAQIFSGSANATECTATSIAVVEKP 372 R PPA P PQ + ++ + FS + A + TA S +V+ P Sbjct: 59 RPPPAQAPAPQPAPQPAPTPSVGSSFFSSLSQAVKQTAASAGLVDAP 105
>KRA42_HUMAN (Q9BYR5) Keratin-associated protein 4-2 (Keratin-associated protein| 4.2) (Ultrahigh sulfur keratin-associated protein 4.2) Length = 136 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 412 CICHPCRPQFCSALVFQQPQCWWQCTPSHLQT 317 C+ CRPQ C + V QP C C+PS QT Sbjct: 41 CVSSCCRPQCCQS-VCCQPTC---CSPSCCQT 68
>TRME_CHLMU (Q9PLM9) Probable tRNA modification GTPase trmE| Length = 444 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +1 Query: 217 TISAPRTPPASTVFPIIVPQIPDSVALEAQIFSGS 321 TI+A TPP I+ PD++++ +IFSG+ Sbjct: 6 TIAAIATPPGEGSVAIVRVSGPDAISISNRIFSGN 40
>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) Length = 925 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = +3 Query: 21 QGCDESHEEEGKGTKESCKEG-------HEDEKGGREEDGHTE 128 +G +E EEE + +EG E E+G +EE+G TE Sbjct: 532 EGQEEEEEEEEAAKSDQAEEGGSEKEGSSEKEEGEQEEEGETE 574
>TRI42_MOUSE (Q9D2H5) Tripartite motif protein 42| Length = 723 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 6/32 (18%) Frame = -1 Query: 415 SCICHPC------RPQFCSALVFQQPQCWWQC 338 +C C PC QFC + P C W C Sbjct: 36 NCTCFPCPYKDERNCQFCHCTCAENPNCHWCC 67
>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42| Length = 723 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 6/32 (18%) Frame = -1 Query: 415 SCICHPC------RPQFCSALVFQQPQCWWQC 338 +C C PC QFC + P C W C Sbjct: 36 NCTCFPCPYKDERNCQFCHCTCSESPNCHWCC 67
>NFM_HUMAN (P07197) Neurofilament triplet M protein (160 kDa neurofilament| protein) (Neurofilament medium polypeptide) (NF-M) (Neurofilament 3) Length = 915 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 7/39 (17%) Frame = +3 Query: 33 ESHEEEGKGTKE-------SCKEGHEDEKGGREEDGHTE 128 E EEE +G K S KEG +++ G +E+G TE Sbjct: 533 EEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETE 571
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated| transcript 2) Length = 2161 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +3 Query: 36 SHEEEGKGTKESCKEGHEDEKGGREEDGHTEFLQG 140 S EE+G+ + E EGH+D + E+ T+ +G Sbjct: 342 SDEEDGRDSDEEGAEGHKDSQSAAGEEPETDGKKG 376
>STM_ARATH (Q38874) Homeobox protein SHOOT MERISTEMLESS| Length = 382 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/54 (29%), Positives = 23/54 (42%) Frame = -2 Query: 414 LAFATHADLNSVQHWFFNNRNAGGSALRRICRPGEDLSFQCNGVWDLRHYDGEN 253 LA +T D + +WF N R +R +P ED+ F HY +N Sbjct: 320 LAESTGLDQKQINNWFINQR-------KRHWKPSEDMQFVVMDATHPHHYFMDN 366
>SIAL_PIG (P31936) Bone sialoprotein-2 (Bone sialoprotein II) (BSP II)| (Cell-binding sialoprotein) (Integrin-binding sialoprotein) Length = 300 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREEDGHTE 128 +E EEE +E E +ED G +ED E Sbjct: 61 EEEEEEEENSNEEENNEENEDSDGNEDEDSEAE 93
>ERIC1_HUMAN (Q86X53) Glutamate-rich protein 1| Length = 443 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 13/42 (30%) Frame = +3 Query: 33 ESHEEEGKGTKESCKE-------------GHEDEKGGREEDG 119 E EG+G E+C+E G ED K REEDG Sbjct: 193 EDSSNEGEGVGEACEEDGVDTSEEDPTLAGEEDVKDTREEDG 234
>CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC2L1 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1) Length = 784 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +3 Query: 30 DESHEEEGKGTKESCKEGHEDEKGGREEDG 119 +E EEEG ++ES +E E+E+ EE G Sbjct: 298 EEEEEEEGSTSEESEEEEEEEEEEEEEETG 327
>HSP76_HUMAN (P17066) Heat shock 70 kDa protein 6 (Heat shock 70 kDa protein B')| Length = 643 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -2 Query: 408 FATHADLNSVQHWFFNNRNAGGSALRRICRPGEDLSF 298 FA + ++HW F + GG R+C GED +F Sbjct: 80 FADTTVQSDMKHWPFRVVSEGGKPKVRVCYRGEDKTF 116 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,304,628 Number of Sequences: 219361 Number of extensions: 1038584 Number of successful extensions: 4307 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 3517 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4186 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
