ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25i22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_475575.1| Oryza sativa (japonica cultivar-group), predic... 70 6e-09
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
3dbj|AK067812.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 6e-09
4gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 70 6e-09
5gb|AY104219.1| Zea mays PCO130396 mRNA sequence 66 1e-07
6emb|Z58203.1|HS32A8F H.sapiens CpG island DNA genomic Mse1 fragm... 44 0.36
7gb|AC126549.4| Mus musculus BAC clone RP24-326I12 from chromosom... 42 1.4
8gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome... 42 1.4
9gb|AC116157.4| Homo sapiens chromosome 15, clone RP11-1006B19, c... 42 1.4
10emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in ... 42 1.4
11emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chr... 42 1.4
12gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Canc... 40 5.6
13ref|XM_522895.1| PREDICTED: Pan troglodytes similar to mixed-lin... 40 5.6
14gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome... 40 5.6
15gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosom... 40 5.6
16emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 o... 40 5.6
17gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 5.6
18gb|AC090419.7| Homo sapiens chromosome 17, clone CTD-2107B16, co... 40 5.6
19emb|AL603834.6| Mouse DNA sequence from clone RP23-113D4 on chro... 40 5.6
20emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4,... 40 5.6
21emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in ... 40 5.6
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
23gb|AC139677.4| Homo sapiens chromosome 17, clone RP11-1070B7, co... 40 5.6
24gb|AC004816.1|AC004816 Homo sapiens PAC clone RP6-65G23 from 14q... 40 5.6
25gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 40 5.6
26dbj|AK109486.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
27dbj|AK101242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
28gb|AC005829.1|AC005829 Homo sapiens chromosome 17, clone hRPK.25... 40 5.6
29dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 5.6
30gb|AC153867.3| Mus musculus 6 BAC RP23-400K22 (Roswell Park Canc... 40 5.6
31gb|AC127032.8| Homo sapiens chromosome 17, clone RP11-162O14, co... 40 5.6 
>ref|XM_475575.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1230

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                  
Query: 378 gaacagaattgaggtctgcatgggtggcaaatgcaagaa 416
           |||||||||||||||||||||||| ||||||||||||||
Sbjct: 957 gaacagaattgaggtctgcatgggaggcaaatgcaagaa 995



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 109 aagaggatggccacactgaattcctgcaaggatgaagacagc 150
           |||| |||||||||| ||| |  |||||||||||||||||||
Sbjct: 676 aagaagatggccacattgactctctgcaaggatgaagacagc 717
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                      
Query: 378     gaacagaattgaggtctgcatgggtggcaaatgcaagaa 416
               |||||||||||||||||||||||| ||||||||||||||
Sbjct: 2113364 gaacagaattgaggtctgcatgggaggcaaatgcaagaa 2113402



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                         
Query: 109     aagaggatggccacactgaattcctgcaaggatgaagacagc 150
               |||| |||||||||| ||| |  |||||||||||||||||||
Sbjct: 2113083 aagaagatggccacattgactctctgcaaggatgaagacagc 2113124
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>dbj|AK067812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114P12, full
            insert sequence
          Length = 1497

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                   
Query: 378  gaacagaattgaggtctgcatgggtggcaaatgcaagaa 416
            |||||||||||||||||||||||| ||||||||||||||
Sbjct: 1069 gaacagaattgaggtctgcatgggaggcaaatgcaagaa 1107



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 109 aagaggatggccacactgaattcctgcaaggatgaagacagc 150
           |||| |||||||||| ||| |  |||||||||||||||||||
Sbjct: 788 aagaagatggccacattgactctctgcaaggatgaagacagc 829
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>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 38/39 (97%)
 Strand = Plus / Plus

                                                    
Query: 378   gaacagaattgaggtctgcatgggtggcaaatgcaagaa 416
             |||||||||||||||||||||||| ||||||||||||||
Sbjct: 80205 gaacagaattgaggtctgcatgggaggcaaatgcaagaa 80243



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                       
Query: 109   aagaggatggccacactgaattcctgcaaggatgaagacagc 150
             |||| |||||||||| ||| |  |||||||||||||||||||
Sbjct: 79924 aagaagatggccacattgactctctgcaaggatgaagacagc 79965
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>gb|AY104219.1| Zea mays PCO130396 mRNA sequence
          Length = 960

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                
Query: 381 cagaattgaggtctgcatgggtggcaaatgcaagaag 417
           ||||||||||||||||||||| |||||||||||||||
Sbjct: 475 cagaattgaggtctgcatggggggcaaatgcaagaag 511
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>emb|Z58203.1|HS32A8F H.sapiens CpG island DNA genomic Mse1 fragment, clone 32a8, forward
           read cpg32a8.ft1a
          Length = 270

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 169 agcaacagtgagtgtgaagggg 190
           ||||||||||||||||||||||
Sbjct: 69  agcaacagtgagtgtgaagggg 90
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>gb|AC126549.4| Mus musculus BAC clone RP24-326I12 from chromosome 13, complete
             sequence
          Length = 189739

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 97    aaggaggaagagaagaggatg 117
             |||||||||||||||||||||
Sbjct: 76693 aaggaggaagagaagaggatg 76713
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>gb|AC127262.3| Mus musculus BAC clone RP24-326H8 from chromosome 9, complete sequence
          Length = 181862

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 100    gaggaagagaagaggatggcc 120
              |||||||||||||||||||||
Sbjct: 177265 gaggaagagaagaggatggcc 177285
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>gb|AC116157.4| Homo sapiens chromosome 15, clone RP11-1006B19, complete sequence
          Length = 217659

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 98     aggaggaagagaagaggatgg 118
              |||||||||||||||||||||
Sbjct: 102258 aggaggaagagaagaggatgg 102278
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>emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in linkage group 21,
              complete sequence
          Length = 211164

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 362    ttgaaaaaccagtgctgaaca 382
              |||||||||||||||||||||
Sbjct: 195503 ttgaaaaaccagtgctgaaca 195523
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>emb|CT030730.7| Mouse DNA sequence from clone RP24-252L17 on chromosome 9, complete
             sequence
          Length = 151456

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   gaggaagagaagaggatggcc 120
             |||||||||||||||||||||
Sbjct: 84312 gaggaagagaagaggatggcc 84332
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>gb|AC153630.1| Mus musculus 6 BAC RP23-289O16 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 217496

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 107   agaagaggatggccacactg 126
             ||||||||||||||||||||
Sbjct: 83661 agaagaggatggccacactg 83680
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>ref|XM_522895.1| PREDICTED: Pan troglodytes similar to mixed-lineage protein kinase
           1 (LOC467498), mRNA
          Length = 3750

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 164 agtccagcaacagtgagtgtgaag 187
           |||||||||||||||||| |||||
Sbjct: 812 agtccagcaacagtgagtatgaag 835
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>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence
          Length = 226256

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 380    acagaattgaggtctgcatgggtggcaa 407
              |||||||||||||| || ||||||||||
Sbjct: 219428 acagaattgaggtcagcctgggtggcaa 219401
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>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence
          Length = 190295

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 380    acagaattgaggtctgcatgggtggcaa 407
              |||||||||||||| || ||||||||||
Sbjct: 117956 acagaattgaggtcagcctgggtggcaa 117983
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>emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 on chromosome 22 Contains
             GSSs, complete sequence
          Length = 119008

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 125   tgaattcctgcaaggatgaagaca 148
             ||||||||||||||||||| ||||
Sbjct: 47665 tgaattcctgcaaggatgatgaca 47642
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>gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-446A15, complete
             sequence
          Length = 178963

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aggaggaagagaagaggatg 117
             ||||||||||||||||||||
Sbjct: 87752 aggaggaagagaagaggatg 87771
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>gb|AC090419.7| Homo sapiens chromosome 17, clone CTD-2107B16, complete sequence
          Length = 139585

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aggaggaagagaagaggatg 117
              ||||||||||||||||||||
Sbjct: 138968 aggaggaagagaagaggatg 138987
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>emb|AL603834.6| Mouse DNA sequence from clone RP23-113D4 on chromosome 11 Contains the
             Rpa1 gene for replication protein A1, the 5' end of a
             novel gene and a CpG island, complete sequence
          Length = 67911

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   ggccacactgaattcctgcaagga 140
             ||||||||||| ||||||||||||
Sbjct: 49365 ggccacactgagttcctgcaagga 49388
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>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
             complete sequence
          Length = 172435

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 345   caccagcattgcggttgttg 364
             ||||||||||||||||||||
Sbjct: 40204 caccagcattgcggttgttg 40185
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>emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in linkage group 16,
              complete sequence
          Length = 215158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    cccatcatagtgcctcaaat 278
              ||||||||||||||||||||
Sbjct: 126203 cccatcatagtgcctcaaat 126222
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 345      caccagcattgcggttgttg 364
                ||||||||||||||||||||
Sbjct: 16510971 caccagcattgcggttgttg 16510952
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>gb|AC139677.4| Homo sapiens chromosome 17, clone RP11-1070B7, complete sequence
          Length = 179564

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     aggaggaagagaagaggatg 117
              ||||||||||||||||||||
Sbjct: 142015 aggaggaagagaagaggatg 141996
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>gb|AC004816.1|AC004816 Homo sapiens PAC clone RP6-65G23 from 14q24.3, complete sequence
          Length = 166200

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   agtccagcaacagtgagtgtgaag 187
             |||||||||||||||||| |||||
Sbjct: 26695 agtccagcaacagtgagtatgaag 26718
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>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   cctgcaagcacagttttccc 260
             ||||||||||||||||||||
Sbjct: 89685 cctgcaagcacagttttccc 89666
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>dbj|AK109486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H07, full
           insert sequence
          Length = 912

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 caccagcattgcggttgttg 364
           ||||||||||||||||||||
Sbjct: 657 caccagcattgcggttgttg 638
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>dbj|AK101242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031P14, full
           insert sequence
          Length = 830

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 caccagcattgcggttgttg 364
           ||||||||||||||||||||
Sbjct: 571 caccagcattgcggttgttg 552
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>gb|AC005829.1|AC005829 Homo sapiens chromosome 17, clone hRPK.259_G_18, complete sequence
          Length = 170030

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aggaggaagagaagaggatg 117
              ||||||||||||||||||||
Sbjct: 127709 aggaggaagagaagaggatg 127728
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 224     ctgcgcctcgaacaccacct 243
               ||||||||||||||||||||
Sbjct: 2175808 ctgcgcctcgaacaccacct 2175789
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>gb|AC153867.3| Mus musculus 6 BAC RP23-400K22 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse6 BAC Library) complete sequence
          Length = 196838

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    agaagaggatggccacactg 126
              ||||||||||||||||||||
Sbjct: 137351 agaagaggatggccacactg 137370
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>gb|AC127032.8| Homo sapiens chromosome 17, clone RP11-162O14, complete sequence
          Length = 187685

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 98     aggaggaagagaagaggatg 117
              ||||||||||||||||||||
Sbjct: 153729 aggaggaagagaagaggatg 153748


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,478,941
Number of Sequences: 3902068
Number of extensions: 3478941
Number of successful extensions: 73869
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73764
Number of HSP's gapped (non-prelim): 105
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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