>CLPC_PEA (P35100) ATP-dependent Clp protease ATP-binding subunit clpC|
           homolog, chloroplast precursor
          Length = 922

 Score =  120 bits (300), Expect = 2e-27
 Identities = 68/135 (50%), Positives = 86/135 (63%), Gaps = 2/135 (1%)
 Frame = +3

Query: 24  MAGTLVLPVALETTFAGRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSA 203
           MA  L   +++    AG    +H  S  ++R+   +       +RM+ F GLR+ +  + 
Sbjct: 1   MARVLAQSLSVPGLVAGHKDSQHKGSGKSKRSVKTMCALRTSGLRMSGFSGLRTFNHLNT 60

Query: 204 MRSS--NFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 377
           M     +F S V+    SRR R   F+ RAMFERFTEKAIKVIMLAQEEARRLGHNFVGT
Sbjct: 61  MMRPGLDFHSKVSKAVSSRRARAKRFIPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 120

Query: 378 EQVLLGLVGEGTGIA 422
           EQ+LLGL+GEGTGIA
Sbjct: 121 EQILLGLIGEGTGIA 135



 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 29/55 (52%), Positives = 42/55 (76%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR + FV  A+   FT +A +V+ L+QEEAR+LGHN++G+E +LLGL+ EG G+A
Sbjct: 158 GRGSGFV--AVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVA 210

>CLPAB_LYCES (P31542) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog CD4B, chloroplast precursor
          Length = 923

 Score =  119 bits (297), Expect = 4e-27
 Identities = 68/135 (50%), Positives = 88/135 (65%), Gaps = 2/135 (1%)
 Frame = +3

Query: 24  MAGTLVLPVALETTFAGRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSA 203
           MA  LV   ++ ++ AG    +   S  T+R  +ML  + +  + +  F GLR  ++   
Sbjct: 1   MARALVQSTSIPSSVAGERTTKFNGSGKTKRAVTMLCNAQSSSLTLRDFTGLRGCNAIDT 60

Query: 204 MRSSN--FRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 377
           +  S    +S VA+  + RR R   FV +AMFERFTEKAIKVIMLAQEEARRLGHNFVGT
Sbjct: 61  LVRSGETLQSKVAAATYVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGT 120

Query: 378 EQVLLGLVGEGTGIA 422
           EQ+LLGL+GEGTGIA
Sbjct: 121 EQILLGLIGEGTGIA 135



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 28/55 (50%), Positives = 41/55 (74%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++G+E +LLGL+ EG G+A
Sbjct: 158 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVA 210

>CLPAA_LYCES (P31541) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog CD4A, chloroplast precursor
          Length = 926

 Score =  116 bits (290), Expect = 2e-26
 Identities = 70/136 (51%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
 Frame = +3

Query: 24  MAGTLVLPVALETTFAGRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSA 203
           MA  LV    +  + AG   G+   S   +RT  ML        R+  F GLR  ++   
Sbjct: 2   MARALVQSTNILPSVAGERAGQFNGSRKDQRTVRMLCNVKCCSSRLNNFAGLRGCNALDT 61

Query: 204 M---RSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVG 374
           +         S VA+  F RR R   FV +AMFERFTEKAIKVIMLAQEEARRLGHNFVG
Sbjct: 62  LLVKSGETLHSKVAAATFVRRPRGCRFVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVG 121

Query: 375 TEQVLLGLVGEGTGIA 422
           TEQ+LLGL+GEGTGIA
Sbjct: 122 TEQILLGLIGEGTGIA 137



 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 27/55 (49%), Positives = 41/55 (74%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR + F+  A+   FT +A +V+ L+ EEAR+LGHN++G+E +LLGL+ EG G+A
Sbjct: 160 GRGSGFI--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVA 212

>CLPA_BRANA (P46523) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog, chloroplast precursor (Fragment)
          Length = 874

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 46/56 (82%), Positives = 52/56 (92%)
 Frame = +3

Query: 255 RGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           +G+ +  V +AMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQ+LLGL+GEGTGIA
Sbjct: 30  KGKGSRGVVKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIA 85



 Score = 54.3 bits (129), Expect = 1e-07
 Identities = 28/55 (50%), Positives = 41/55 (74%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++G+E +LLGL+ EG G+A
Sbjct: 108 GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVA 160

>CLPC_PORPU (P51332) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 821

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 44/45 (97%), Positives = 45/45 (100%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQ+LLGLVGEGTGIA
Sbjct: 1   MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLVGEGTGIA 45



 Score = 56.2 bits (134), Expect = 3e-08
 Identities = 29/55 (52%), Positives = 41/55 (74%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++GTE +L+GLV EG G+A
Sbjct: 68  GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVA 120

>CLPC_GUITH (O78410) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 819

 Score = 89.4 bits (220), Expect = 3e-18
 Identities = 43/45 (95%), Positives = 45/45 (100%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQ+LLGL+GEGTGIA
Sbjct: 1   MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIA 45



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 29/55 (52%), Positives = 41/55 (74%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR + FV  A+   FT +A +V+ L+ EEAR+LGHN++GTE +LLGL+ EG G+A
Sbjct: 68  GRGSGFV--AVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVA 120

>CLPC_CYACA (Q9TM05) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 854

 Score = 86.7 bits (213), Expect = 2e-17
 Identities = 40/45 (88%), Positives = 45/45 (100%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFERFTEKA+KVIMLAQEEARRLGHNFVGTEQ+LLG++GEGTG+A
Sbjct: 32  MFERFTEKAVKVIMLAQEEARRLGHNFVGTEQILLGILGEGTGLA 76



 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 29/55 (52%), Positives = 39/55 (70%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR + FV  A+   FT +A K++ LA EE+R L HN+VGTE +LLGL+ EG G+A
Sbjct: 99  GRGSGFV--AIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVA 151

>CLPC_ODOSI (P49574) ATP-dependent Clp protease ATP-binding subunit clpA|
           homolog
          Length = 885

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 34/44 (77%), Positives = 41/44 (93%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGI 419
           MFE+FTE AIKVIML+QEEARR+GHNFVGTEQ+LLG++G+  GI
Sbjct: 1   MFEKFTEGAIKVIMLSQEEARRMGHNFVGTEQLLLGIIGQRHGI 44



 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 24/55 (43%), Positives = 33/55 (60%)
 Frame = +3

Query: 258 GRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           GR   FV   +   FT +A +V+ +A  E + LG NFVGTE +LL L+ E  G+A
Sbjct: 68  GRGTGFVASEI--PFTPRAKRVLEMAVHEGKDLGQNFVGTEHILLALISESDGVA 120

>CLPC_MYCTU (P0A522) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 29/45 (64%), Positives = 39/45 (86%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFERFT++A +V++LAQEEAR L HN++GTE +LLGL+ EG G+A
Sbjct: 1   MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVA 45



 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 23/41 (56%), Positives = 32/41 (78%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           FT +A KV+ L+  EA +LGHN++GTE +LLGL+ EG G+A
Sbjct: 80  FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVA 120

>CLPC_MYCLE (P24428) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 29/45 (64%), Positives = 39/45 (86%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFERFT++A +V++LAQEEAR L HN++GTE +LLGL+ EG G+A
Sbjct: 1   MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVA 45



 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 23/41 (56%), Positives = 32/41 (78%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           FT +A KV+ L+  EA +LGHN++GTE +LLGL+ EG G+A
Sbjct: 80  FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVA 120

>CLPC_MYCBO (P0A523) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 848

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 29/45 (64%), Positives = 39/45 (86%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFERFT++A +V++LAQEEAR L HN++GTE +LLGL+ EG G+A
Sbjct: 1   MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVA 45



 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 23/41 (56%), Positives = 32/41 (78%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           FT +A KV+ L+  EA +LGHN++GTE +LLGL+ EG G+A
Sbjct: 80  FTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVA 120

>CLPC_BACSU (P37571) Negative regulator of genetic competence clpC/mecB|
          Length = 810

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 33/45 (73%), Positives = 37/45 (82%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MF RFTE+A KV+ LAQEEA RLGHN +GTE +LLGLV EG GIA
Sbjct: 2   MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIA 46



 Score = 55.1 bits (131), Expect = 7e-08
 Identities = 24/41 (58%), Positives = 34/41 (82%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           +T +A KVI L+ +EAR+LGH++VGTE +LLGL+ EG G+A
Sbjct: 80  YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVA 120

>CLPB_OCEIH (Q8EU05) Chaperone clpB|
          Length = 809

 Score = 64.7 bits (156), Expect = 8e-11
 Identities = 32/45 (71%), Positives = 37/45 (82%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MF RFTE+A KV+ L+QEEA RLGHN +GTE +LLGLV EG GIA
Sbjct: 2   MFGRFTERAQKVLALSQEEAVRLGHNNIGTEHILLGLVREGEGIA 46



 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 24/41 (58%), Positives = 35/41 (85%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           +T +A KV+ L+Q+EAR+LGH++VGTE +LLGL+ EG G+A
Sbjct: 80  YTPRAKKVVELSQDEARKLGHSYVGTEHILLGLIREGEGVA 120

>CLPC_CHLPN (Q9Z8A6) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 845

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFE+FT +A +VI LA++EA+RL HN++GTE +LLGL+  G G+A
Sbjct: 1   MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVA 45



 Score = 35.0 bits (79), Expect = 0.072
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 303 TEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           T +  K    A EEA  L HN+VGTE +LLG++ +   +A
Sbjct: 82  TGRVKKSFESANEEASLLEHNYVGTEHLLLGILHQSDSVA 121

>CLPC_CHLTR (O84288) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 854

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFE+FT +A +VI LA++EA+RL HN++GTE +LLGL+  G G+A
Sbjct: 1   MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVA 45



 Score = 38.1 bits (87), Expect = 0.008
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +3

Query: 303 TEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           T +  K    A EEA  L HN+VGTE +LLG++ +  G+A
Sbjct: 82  TGRVKKSFESANEEAALLEHNYVGTEHLLLGILNQSDGVA 121

>CLPC_CHLMU (Q9PKA8) Probable ATP-dependent Clp protease ATP-binding subunit|
          Length = 870

 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 26/45 (57%), Positives = 37/45 (82%)
 Frame = +3

Query: 288 MFERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MFE+FT +A +VI LA++EA+RL HN++GTE +LLGL+  G G+A
Sbjct: 17  MFEKFTNRAKQVIKLAKKEAQRLNHNYLGTEHILLGLLKLGQGVA 61



 Score = 37.7 bits (86), Expect = 0.011
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +3

Query: 303 TEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           T +  K    A EEA  L HN+VGTE +LLG++ +  G+A
Sbjct: 98  TGRVKKSFESANEEASILEHNYVGTEHLLLGILNQADGVA 137

>ERD1_ARATH (P42762) ERD1 protein, chloroplast precursor|
          Length = 945

 Score = 56.6 bits (135), Expect = 2e-08
 Identities = 32/76 (42%), Positives = 48/76 (63%)
 Frame = +3

Query: 180 RSVHSFSAMRSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLG 359
           R++H FS    +N R      RF +R R+      A+FERFTE+AI+ I+ +Q+EA+ LG
Sbjct: 50  RTIHRFSTT-PTNLR------RFPQRKRKKFTPISAVFERFTERAIRAIIFSQKEAKSLG 102

Query: 360 HNFVGTEQVLLGLVGE 407
            + V T+ +LLGL+ E
Sbjct: 103 KDMVYTQHLLLGLIAE 118

>HLYB_TREHY (Q54316) Hemolysin B|
          Length = 828

 Score = 41.6 bits (96), Expect = 8e-04
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +3

Query: 318 KVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           K+I  + EEAR L HN++GTE +LLGL+ E +G A
Sbjct: 89  KLISRSAEEARALSHNYIGTEHLLLGLLREESGTA 123



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
 Frame = +3

Query: 288 MFE-RFTEKAIKVIML-AQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           MF+   T KA KVI L AQEEA+RL H+ V  E +LLGL+ E   +A
Sbjct: 1   MFQFHLTSKAKKVIELYAQEEAKRLNHDMVTPEHILLGLLYESEALA 47

>Y2686_MYCBO (P0A525) Hypothetical protein Mb2686|
          Length = 252

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLV 401
           F+  A KV+ L   EA RLGHN++GTE +LL L+
Sbjct: 172 FSGPARKVLELTFREALRLGHNYIGTEHLLLALL 205



 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 207 RSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQV 386
           +S       A  RF  R    +  +   F RFT +A   ++ AQ  A     + +  + +
Sbjct: 68  KSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL 127

Query: 387 LLGLVGEGTGIA 422
           LLG++ +   +A
Sbjct: 128 LLGVLTDPAALA 139

>Y2667_MYCTU (P0A524) Hypothetical protein Rv2667/MT2741|
          Length = 252

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLV 401
           F+  A KV+ L   EA RLGHN++GTE +LL L+
Sbjct: 172 FSGPARKVLELTFREALRLGHNYIGTEHLLLALL 205



 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/72 (23%), Positives = 31/72 (43%)
 Frame = +3

Query: 207 RSSNFRSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQV 386
           +S       A  RF  R    +  +   F RFT +A   ++ AQ  A     + +  + +
Sbjct: 68  KSMGVTKQAAQKRFVPRAEATTLDSNQGFRRFTPRARNAVVAAQNAAHGAASSEITPDHL 127

Query: 387 LLGLVGEGTGIA 422
           LLG++ +   +A
Sbjct: 128 LLGVLTDPAALA 139

>CLPB_LEPIN (Q8F509) Chaperone clpB|
          Length = 860

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 416
           F+  A+ ++  A E  + L   ++ T+ +LLGL+  GTG
Sbjct: 84  FSRSAVSLLKAADEVRKELKDEYLSTDHILLGLMKNGTG 122

>CLPB_LEPIC (Q72QU2) Chaperone clpB|
          Length = 860

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 300 FTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTG 416
           F+  A+ ++  A E  + L   ++ T+ +LLGL+  GTG
Sbjct: 84  FSRSAVSLLKAADEVRKELKDEYLSTDHILLGLMKNGTG 122

>CLPB1_SYNY3 (P74459) Chaperone clpB 1|
          Length = 898

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 297 RFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           +FTE+A   I+ +QE ARR  +  +  E +LL L+ +  G+A
Sbjct: 8   KFTEQAWDAIVKSQEVARRYKNTNLEVEHILLALLEQDMGLA 49

>CLPB2_STRAW (Q826F2) Chaperone clpB 2|
          Length = 879

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 297 RFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGI 419
           R T+K+ + +  AQ  A R+GH  V  E +LL L+ +  G+
Sbjct: 5   RLTQKSQEALQEAQTAAGRMGHTEVDGEHLLLALLDQEDGL 45

>Y394_PSEAE (P24562) Hypothetical UPF0001 protein PA0394|
          Length = 230

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -1

Query: 138 TLPTLRESSWFHETSSVDRLYGLQKLSQEQPAGLRSL 28
           T P      W H   SVDRL   Q+LS+++PAGL  L
Sbjct: 87  TRPIAEHFQWVH---SVDRLKIAQRLSEQRPAGLPPL 120

>CLPB_PROMM (Q7V8B1) Chaperone clpB|
          Length = 865

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 294 ERFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLV 401
           ++FTEK    I+LAQ+ A++  H  + TE +LL L+
Sbjct: 6   DQFTEKGWAAIVLAQQLAQQRKHQQLETEHLLLSLL 41

>CLPB2_SYNP7 (O34209) Chaperone clpB 2|
          Length = 895

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 297 RFTEKAIKVIMLAQEEARRLGHNFVGTEQVLLGLVGEGTGIA 422
           RFT++A   I+ +Q  AR+L    +  E VLL L+ + +G+A
Sbjct: 8   RFTDQAWDAIVESQTVARQLRQQQLEVEHVLLALLDQESGVA 49

>TEPA_BACHD (Q9KA93) Translocation-enhancing protein tepA|
          Length = 256

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 261 RRASFVTRAMFERFTEKAIKVIMLAQEEARR-LGHNFVGTEQVLLGLVGEGTGI 419
           R  SFVT+      +E+  K +M ++    R +G N +GT+ V  GL+ E  GI
Sbjct: 180 RVVSFVTK--HSHISEEKFKELMFSKGNLTRDIGTNVIGTDAVTYGLIDEVGGI 231

>UN84A_HUMAN (O94901) Sad1/unc-84 protein-like 1 (Unc-84 homolog A)|
          Length = 812

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 159 SLQDGLMTLPTLRESSWFHETSSVDRLYGL 70
           SLQD +   P + + SW  E ++VD  +GL
Sbjct: 123 SLQDAVTRRPPVLDESWIREQTTVDHFWGL 152

>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)|
          Length = 380

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
 Frame = +3

Query: 72  GRTGGRHWKSHGTRRTPSMLAMSLNRPVRMAAFVGLRSVHSFSAMRSSNFRSTVASYRFS 251
           GRTG     +     T  +  M  NR +R+    G++ V+ F   +  + +    + R+S
Sbjct: 47  GRTGMETLTNEAGEVTSHLQGM-FNRTIRLLE-AGIKPVYVFDG-KPPDLKKQELAKRYS 103

Query: 252 RRGRRASFVTRAM-------FERFTEKAIKVIMLAQEEARRL 356
           +R      +T A+        E+F+++ +KV     EE +RL
Sbjct: 104 KREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRL 145

>NCAP_IAWIL (P15682) Nucleoprotein|
          Length = 498

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
 Frame = +3

Query: 51  ALETTFAGRTGGRHWKSHGTRRTPSMLA---MSLNRPVRMAAFVGLRSVHSFSAMRSSNF 221
           A+ T   G T  +   S      P+      +  +RP  MAAF G       +  R+S+ 
Sbjct: 387 AIRTRSGGNTNQQRASSGQISIQPTFSVQRNLPFDRPTIMAAFTGN------TEGRTSDM 440

Query: 222 RSTVASYRFSRRGRRASFVTRAMFERFTEKAIKVIM 329
           R+ +     S R    SF  R +FE   EKA   I+
Sbjct: 441 RTEIIRLMESARPEDVSFQGRGVFELSDEKAASPIV 476

>BACH2_HUMAN (Q9BYV9) Transcription regulator protein BACH2 (BTB and CNC homolog|
           2)
          Length = 841

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
 Frame = -3

Query: 412 VPSPTRPNRTCSVPTKL*PR--------RLASSCAS 329
           +P   RPN +C VP K+ PR        R +SSC+S
Sbjct: 490 LPGRMRPNTSCPVPIKVCPRSPPLETRTRTSSSCSS 525

>YHN8_YEAST (P38799) Hypothetical 63.3 kDa protein in NMD2-IRE1 intergenic|
           region
          Length = 552

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 213 TSA*LRSYVPISDRQMLPSLQDGLMTLPTLRESSWFHE 100
           T+  +RS++P    Q L  L  G  T+P +   SWF E
Sbjct: 487 TTLMVRSHLPFEVSQRLKELLGGKFTVPNIVIDSWFDE 524

>M3K13_PONPY (Q5R8X7) Mitogen-activated protein kinase kinase kinase 13 (EC|
           2.7.11.25)
          Length = 966

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -3

Query: 373 PTKL*PRRLASSCASIMTFIAFSVNLSNIALVTKEARLPRLENL*DATVDLKLDERIAEK 194
           P +  P R  SSC S  TF + + ++S+     +E       N  D   D KL++R+AEK
Sbjct: 830 PRRQRPHRCISSCQSYSTFSSENFSVSD----GEEGNTSDHSNSPDELAD-KLEDRLAEK 884

Query: 193 L 191
           L
Sbjct: 885 L 885

>M3K13_HUMAN (O43283) Mitogen-activated protein kinase kinase kinase 13 (EC|
           2.7.11.25) (Mixed lineage kinase) (MLK) (Leucine
           zipper-bearing kinase)
          Length = 966

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = -3

Query: 373 PTKL*PRRLASSCASIMTFIAFSVNLSNIALVTKEARLPRLENL*DATVDLKLDERIAEK 194
           P +  P R  SSC S  TF + + ++S+     +E       N  D   D KL++R+AEK
Sbjct: 830 PRRQRPHRCISSCQSYSTFSSENFSVSD----GEEGNTSDHSNSPDELAD-KLEDRLAEK 884

Query: 193 L 191
           L
Sbjct: 885 L 885

>FRZE_MYXXA (P18769) Gliding motility regulatory protein (EC 2.7.13.3)|
          Length = 777

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 249 SRRGRRASFVTRAMFERFTEKAIKVIMLAQE 341
           S RGR  S  T A+FERF+    + + LA+E
Sbjct: 238 SARGRLRSSETEALFERFSRLGDRFLRLAEE 268

>FLGI_RHOPA (Q6N2Y8) Flagellar P-ring protein precursor (Basal body P-ring|
           protein)
          Length = 373

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 229 VDLKLDERIAEKLCTDLRPTNAAILTGRFNDIANIEGV 116
           V   L +  A  LC  L    AA  T R  D+ANIEG+
Sbjct: 4   VSTHLVKLAAAALCALLLSAVAASATSRIKDLANIEGI 41


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,202,284
Number of Sequences: 219361
Number of extensions: 1141262
Number of successful extensions: 3595
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 3504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3594
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)