ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25i18 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 252 bits (127), Expect = 8e-64 Identities = 339/409 (82%), Gaps = 3/409 (0%) Strand = Plus / Minus Query: 13 tacttttgaccatggcagggaccttagtcctgccggttgctcttgagacaacttttgcag 72 ||||| ||||||||||||| ||| | ||| ||||||||| || | ||||||||||||| Sbjct: 7099820 tacttctgaccatggcaggcaccctgctccagccggttgccctcggaacaacttttgcag 7099761 Query: 73 gccgtacaggcggtcgacactggaagtctcatggaaccaggaggactccctcaatgttgg 132 ||||| | | |||| | |||||||||||||| || |||||| ||||||||||||||| Sbjct: 7099760 gccgtgtaagtggtcagcgatggaagtctcatggcacaaggaggcctccctcaatgttgg 7099701 Query: 133 caatgtcattaaaccgtcctgtaaggatggcagcatttgtcggtctgagatcggtacata 192 | ||||| || | ||| || || | |||||| ||||||||||||||||||||||| |||| Sbjct: 7099700 cgatgtccttgagccgcccagttaagatggccgcatttgtcggtctgagatcggtgcata 7099641 Query: 193 gcttctcagctatgcgctcgtccaacttcaggtcaacagttgcatcttacagattctcta 252 ||||||||| | || |||||||||| || || |||||||||||||||| | | Sbjct: 7099640 gcttctcagtcacgcctgtcaccaacttcagatcgacggttgcatcttacagat---caa 7099584 Query: 253 gacggggaaggcgtgcttcttttgtaaccagagcgatgttcgagagatttactgagaaag 312 ||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||||| Sbjct: 7099583 gacggggaaggcgtgctcgctttgtaaccagatcgatgtttgagaggttcactgagaaag 7099524 Query: 313 ctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcg 372 |||| ||||| |||||||| || ||||| || || || || |||| ||||||||||||| Sbjct: 7099523 ctattaaggttataatgcttgcgcaagaagaggcaaggcggttgggccacaactttgtcg 7099464 Query: 373 gaactgagcaagttctattgggtctggttggagaaggcactggtattgc 421 | ||||||||| |||| ||||||||| |||||||||| ||||||||||| Sbjct: 7099463 gtactgagcaaattctcttgggtctgattggagaagggactggtattgc 7099415
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 252 bits (127), Expect = 8e-64 Identities = 339/409 (82%), Gaps = 3/409 (0%) Strand = Plus / Minus Query: 13 tacttttgaccatggcagggaccttagtcctgccggttgctcttgagacaacttttgcag 72 ||||| ||||||||||||| ||| | ||| ||||||||| || | ||||||||||||| Sbjct: 7099699 tacttctgaccatggcaggcaccctgctccagccggttgccctcggaacaacttttgcag 7099640 Query: 73 gccgtacaggcggtcgacactggaagtctcatggaaccaggaggactccctcaatgttgg 132 ||||| | | |||| | |||||||||||||| || |||||| ||||||||||||||| Sbjct: 7099639 gccgtgtaagtggtcagcgatggaagtctcatggcacaaggaggcctccctcaatgttgg 7099580 Query: 133 caatgtcattaaaccgtcctgtaaggatggcagcatttgtcggtctgagatcggtacata 192 | ||||| || | ||| || || | |||||| ||||||||||||||||||||||| |||| Sbjct: 7099579 cgatgtccttgagccgcccagttaagatggccgcatttgtcggtctgagatcggtgcata 7099520 Query: 193 gcttctcagctatgcgctcgtccaacttcaggtcaacagttgcatcttacagattctcta 252 ||||||||| | || |||||||||| || || |||||||||||||||| | | Sbjct: 7099519 gcttctcagtcacgcctgtcaccaacttcagatcgacggttgcatcttacagat---caa 7099463 Query: 253 gacggggaaggcgtgcttcttttgtaaccagagcgatgttcgagagatttactgagaaag 312 ||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||||| Sbjct: 7099462 gacggggaaggcgtgctcgctttgtaaccagatcgatgtttgagaggttcactgagaaag 7099403 Query: 313 ctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcg 372 |||| ||||| |||||||| || ||||| || || || || |||| ||||||||||||| Sbjct: 7099402 ctattaaggttataatgcttgcgcaagaagaggcaaggcggttgggccacaactttgtcg 7099343 Query: 373 gaactgagcaagttctattgggtctggttggagaaggcactggtattgc 421 | ||||||||| |||| ||||||||| |||||||||| ||||||||||| Sbjct: 7099342 gtactgagcaaattctcttgggtctgattggagaagggactggtattgc 7099294
>emb|AL928782.4|CNS08CCC Oryza sativa chromosome 12, . BAC OSJNBb0069I24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 68450 Score = 252 bits (127), Expect = 8e-64 Identities = 339/409 (82%), Gaps = 3/409 (0%) Strand = Plus / Minus Query: 13 tacttttgaccatggcagggaccttagtcctgccggttgctcttgagacaacttttgcag 72 ||||| ||||||||||||| ||| | ||| ||||||||| || | ||||||||||||| Sbjct: 67506 tacttctgaccatggcaggcaccctgctccagccggttgccctcggaacaacttttgcag 67447 Query: 73 gccgtacaggcggtcgacactggaagtctcatggaaccaggaggactccctcaatgttgg 132 ||||| | | |||| | |||||||||||||| || |||||| ||||||||||||||| Sbjct: 67446 gccgtgtaagtggtcagcgatggaagtctcatggcacaaggaggcctccctcaatgttgg 67387 Query: 133 caatgtcattaaaccgtcctgtaaggatggcagcatttgtcggtctgagatcggtacata 192 | ||||| || | ||| || || | |||||| ||||||||||||||||||||||| |||| Sbjct: 67386 cgatgtccttgagccgcccagttaagatggccgcatttgtcggtctgagatcggtgcata 67327 Query: 193 gcttctcagctatgcgctcgtccaacttcaggtcaacagttgcatcttacagattctcta 252 ||||||||| | || |||||||||| || || |||||||||||||||| | | Sbjct: 67326 gcttctcagtcacgcctgtcaccaacttcagatcgacggttgcatcttacagat---caa 67270 Query: 253 gacggggaaggcgtgcttcttttgtaaccagagcgatgttcgagagatttactgagaaag 312 ||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||||| Sbjct: 67269 gacggggaaggcgtgctcgctttgtaaccagatcgatgtttgagaggttcactgagaaag 67210 Query: 313 ctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcg 372 |||| ||||| |||||||| || ||||| || || || || |||| ||||||||||||| Sbjct: 67209 ctattaaggttataatgcttgcgcaagaagaggcaaggcggttgggccacaactttgtcg 67150 Query: 373 gaactgagcaagttctattgggtctggttggagaaggcactggtattgc 421 | ||||||||| |||| ||||||||| |||||||||| ||||||||||| Sbjct: 67149 gtactgagcaaattctcttgggtctgattggagaagggactggtattgc 67101
>emb|BX842241.1|CNS0B0PM Oryza sativa chromosome 12, . Partial sequence from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 45687 Score = 252 bits (127), Expect = 8e-64 Identities = 339/409 (82%), Gaps = 3/409 (0%) Strand = Plus / Minus Query: 13 tacttttgaccatggcagggaccttagtcctgccggttgctcttgagacaacttttgcag 72 ||||| ||||||||||||| ||| | ||| ||||||||| || | ||||||||||||| Sbjct: 8120 tacttctgaccatggcaggcaccctgctccagccggttgccctcggaacaacttttgcag 8061 Query: 73 gccgtacaggcggtcgacactggaagtctcatggaaccaggaggactccctcaatgttgg 132 ||||| | | |||| | |||||||||||||| || |||||| ||||||||||||||| Sbjct: 8060 gccgtgtaagtggtcagcgatggaagtctcatggcacaaggaggcctccctcaatgttgg 8001 Query: 133 caatgtcattaaaccgtcctgtaaggatggcagcatttgtcggtctgagatcggtacata 192 | ||||| || | ||| || || | |||||| ||||||||||||||||||||||| |||| Sbjct: 8000 cgatgtccttgagccgcccagttaagatggccgcatttgtcggtctgagatcggtgcata 7941 Query: 193 gcttctcagctatgcgctcgtccaacttcaggtcaacagttgcatcttacagattctcta 252 ||||||||| | || |||||||||| || || |||||||||||||||| | | Sbjct: 7940 gcttctcagtcacgcctgtcaccaacttcagatcgacggttgcatcttacagat---caa 7884 Query: 253 gacggggaaggcgtgcttcttttgtaaccagagcgatgttcgagagatttactgagaaag 312 ||||||||||||||||| |||||||||||| ||||||| ||||| || |||||||||| Sbjct: 7883 gacggggaaggcgtgctcgctttgtaaccagatcgatgtttgagaggttcactgagaaag 7824 Query: 313 ctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcg 372 |||| ||||| |||||||| || ||||| || || || || |||| ||||||||||||| Sbjct: 7823 ctattaaggttataatgcttgcgcaagaagaggcaaggcggttgggccacaactttgtcg 7764 Query: 373 gaactgagcaagttctattgggtctggttggagaaggcactggtattgc 421 | ||||||||| |||| ||||||||| |||||||||| ||||||||||| Sbjct: 7763 gtactgagcaaattctcttgggtctgattggagaagggactggtattgc 7715
>dbj|AK066153.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058A21, full insert sequence Length = 3088 Score = 244 bits (123), Expect = 2e-61 Identities = 339/409 (82%), Gaps = 4/409 (0%) Strand = Plus / Plus Query: 13 tacttttgaccatggcagggaccttagtcctgccggttgctcttgagacaacttttgcag 72 ||||| ||||||||||||| ||| | ||| ||||||||| || | ||||||||||||| Sbjct: 120 tacttctgaccatggcaggcaccctgctccagccggttgccctcggaacaacttttgcag 179 Query: 73 gccgtacaggcggtcgacactggaagtctcatggaaccaggaggactccctcaatgttgg 132 ||||| | | |||| | |||||||||||||| || |||||| ||||||||||||||| Sbjct: 180 gccgtgtaagtggtcagcgatggaagtctcatggcacaaggaggcctccctcaatgttgg 239 Query: 133 caatgtcattaaaccgtcctgtaaggatggcagcatttgtcggtctgagatcggtacata 192 | ||||| || | ||| || || | |||||| ||||||||||||||||||||||| |||| Sbjct: 240 cgatgtccttgagccgcccagttaagatggccgcatttgtcggtctgagatcggtgcata 299 Query: 193 gcttctcagctatgcgctcgtccaacttcaggtcaacagttgcatcttacagattctcta 252 ||||||||| | || |||||||||| || || |||||||||||||||| | | Sbjct: 300 gcttctcagtcacgcctgtcaccaacttcagatcgacggttgcatcttacagat---caa 356 Query: 253 gacggggaaggcgtgcttcttttgtaaccagagcgatgttcgagagatttactgagaaag 312 ||||||||||||||||| | ||||||||||| ||||||| ||||| || |||||||||| Sbjct: 357 gacggggaaggcgtgct-cgcttgtaaccagatcgatgtttgagaggttcactgagaaag 415 Query: 313 ctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcg 372 |||| ||||| |||||||| || ||||| || || || || |||| ||||||||||||| Sbjct: 416 ctattaaggttataatgcttgcgcaagaagaggcaaggcggttgggccacaactttgtcg 475 Query: 373 gaactgagcaagttctattgggtctggttggagaaggcactggtattgc 421 | ||||||||| |||| ||||||||| |||||||||| ||||||||||| Sbjct: 476 gtactgagcaaattctcttgggtctgattggagaagggactggtattgc 524
>gb|L09547.1|PEAPCLP Pisum sativum (clone pCLp) nuclear encoded precursor to chloroplast protein mRNA, complete cds Length = 3239 Score = 89.7 bits (45), Expect = 7e-15 Identities = 96/113 (84%) Strand = Plus / Plus Query: 306 gagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaac 365 |||||||| || || || |||||||| || || |||||||| ||||| || |||||||| Sbjct: 340 gagaaagcaatcaaagtgataatgctagctcaggaggaagcaagacgtcttggtcacaat 399 Query: 366 tttgtcggaactgagcaagttctattgggtctggttggagaaggcactggtat 418 ||||||||||||||||| |||| |||||||| |||| |||||||||||||| Sbjct: 400 tttgtcggaactgagcagattcttttgggtcttattggtgaaggcactggtat 452
>dbj|AP006715.1| Porphyra yezoensis chloroplast DNA, complete genome Length = 191952 Score = 77.8 bits (39), Expect = 3e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 |||||||| ||||||||||| ||||||||||| ||||| || ||||| |||||| | || Sbjct: 122308 tttactgaaaaagctataaaagtcataatgctagcacaggaagaagctagacgcttagga 122367 Query: 360 cacaactttgtcggaactgagca 382 || || ||||||||||||||||| Sbjct: 122368 cataattttgtcggaactgagca 122390
>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence Length = 129513 Score = 71.9 bits (36), Expect = 2e-09 Identities = 102/124 (82%) Strand = Plus / Minus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 ||||| ||||||||||| || || || ||| | || || |||||||| || || ||||| Sbjct: 40053 tttacggagaaagctatcaaagttattatgttggctcaggaggaagcaaggcggctggga 39994 Query: 360 cacaactttgtcggaactgagcaagttctattgggtctggttggagaaggcactggtatt 419 ||||| ||||| |||||||| || ||||||||||||| |||| ||||| ||||||||| Sbjct: 39993 cacaattttgttggaactgaacagattctattgggtcttattggtgaaggaactggtatt 39934 Query: 420 gcgg 423 |||| Sbjct: 39933 gcgg 39930
>gb|U38804.1|PPU38804 Porphyra purpurea chloroplast, complete genome Length = 191028 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 |||||||| ||||||||||| ||||| ||||| |||||||| ||||| |||||| | || Sbjct: 120962 tttactgaaaaagctataaaagtcatcatgctagcacaagaagaagctagacgcttaggc 121021 Query: 360 cacaactttgtcggaactgagcaa 383 || |||||||| || ||||||||| Sbjct: 121022 cataactttgttggtactgagcaa 121045
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 ||||| |||||||| || |||||||| ||||| || || ||||||||| | ||||||||| Sbjct: 1362460 tttaccgagaaagccattaaggtcatcatgctggctcaggaggaagcgcgtcgcctgggt 1362519 Query: 360 cacaactttgtcggaactgagcaa 383 || ||||| ||||| || |||||| Sbjct: 1362520 cataacttcgtcggcaccgagcaa 1362543
>gb|U16134.1|SSU16134 Synechococcus sp. Clp protease putative regulatory subunit (clpC) gene, complete cds Length = 2935 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 ||||| |||||||| || |||||||| ||||| || || ||||||||| | ||||||||| Sbjct: 356 tttaccgagaaagccattaaggtcatcatgctggctcaggaggaagcgcgtcgcctgggt 415 Query: 360 cacaactttgtcggaactgagcaa 383 || ||||| ||||| || |||||| Sbjct: 416 cataacttcgtcggcaccgagcaa 439
>dbj|AP006098.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT10G08, TM0175, complete sequence Length = 108582 Score = 63.9 bits (32), Expect = 4e-07 Identities = 95/116 (81%) Strand = Plus / Minus Query: 306 gagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaac 365 |||||||| || ||||| || ||||| | || ||||| |||||||| |||||||| || Sbjct: 68572 gagaaagcaatcaaggttattatgctttcccaggaggaggcgagacggctgggtcataat 68513 Query: 366 tttgtcggaactgagcaagttctattgggtctggttggagaaggcactggtattgc 421 ||||| ||||| || || | || |||||||| ||||| ||||||||||||||||| Sbjct: 68512 tttgttggaacagaacagatcctgttgggtcttgttggtgaaggcactggtattgc 68457
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 ||||| |||||||| || |||||||| ||||| || || ||||||||| | ||||||||| Sbjct: 258423 tttaccgagaaagccattaaggtcatcatgctggctcaggaggaagcgcgtcgcctgggt 258364 Query: 360 cacaactttgtcggaactgagcaa 383 || ||||| ||||| || |||||| Sbjct: 258363 cataacttcgtcggcaccgagcaa 258340
>ref|NM_114746.2| Arabidopsis thaliana ATCLPC; ATP binding / ATPase/ DNA binding / nuclease/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT3G48870 (ATCLPC) mRNA, complete cds Length = 3130 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Plus Query: 275 tgtaaccagagcgatgttcgagagatttactgagaaagctataaaggtcataatgctcgc 334 |||| ||| ||| ||||| ||| | ||||| |||||||| || |||||||||||||| | Sbjct: 433 tgtacccaaagcaatgtttgagcgttttaccgagaaagcaattaaggtcataatgctgtc 492 Query: 335 acaagaggaagcgagacgcctgggtcacaactttgtcggaactgagcaagttctattggg 394 ||||||||||| | | || || || |||||||| || ||||||||| | || ||||| Sbjct: 493 tcaagaggaagctcggagacttggccataactttgttgggactgagcaaatactgttggg 552 Query: 395 tctggttggagaaggcactggtattgc 421 ||| |||||||||| ||||| ||||| Sbjct: 553 tctaattggagaagggactgggattgc 579
>emb|AL132963.1|ATT21J18 Arabidopsis thaliana DNA chromosome 3, BAC clone T21J18 Length = 82912 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Minus Query: 275 tgtaaccagagcgatgttcgagagatttactgagaaagctataaaggtcataatgctcgc 334 |||| ||| ||| ||||| ||| | ||||| |||||||| || |||||||||||||| | Sbjct: 74121 tgtacccaaagcaatgtttgagcgttttaccgagaaagcaattaaggtcataatgctgtc 74062 Query: 335 acaagaggaagcgagacgcctgggtcacaactttgtcggaactgagcaagttctattggg 394 ||||||||||| | | || || || |||||||| || ||||||||| | || ||||| Sbjct: 74061 tcaagaggaagctcggagacttggccataactttgttgggactgagcaaatactgttggg 74002 Query: 395 tctggttggagaaggcactggtattgc 421 ||| |||||||||| ||||| ||||| Sbjct: 74001 tctaattggagaagggactgggattgc 73975
>gb|AY056787.1| Arabidopsis thaliana AT3g48870/T21J18_140 mRNA, complete cds Length = 3105 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Plus Query: 275 tgtaaccagagcgatgttcgagagatttactgagaaagctataaaggtcataatgctcgc 334 |||| ||| ||| ||||| ||| | ||||| |||||||| || |||||||||||||| | Sbjct: 433 tgtacccaaagcaatgtttgagcgttttaccgagaaagcaattaaggtcataatgctgtc 492 Query: 335 acaagaggaagcgagacgcctgggtcacaactttgtcggaactgagcaagttctattggg 394 ||||||||||| | | || || || |||||||| || ||||||||| | || ||||| Sbjct: 493 tcaagaggaagctcggagacttggccataactttgttgggactgagcaaatactgttggg 552 Query: 395 tctggttggagaaggcactggtattgc 421 ||| |||||||||| ||||| ||||| Sbjct: 553 tctaattggagaagggactgggattgc 579
>dbj|AB022324.1| Arabidopsis thaliana mRNA for AtClpC, complete cds Length = 3090 Score = 61.9 bits (31), Expect = 2e-06 Identities = 118/147 (80%) Strand = Plus / Plus Query: 275 tgtaaccagagcgatgttcgagagatttactgagaaagctataaaggtcataatgctcgc 334 |||| ||| ||| ||||| ||| | ||||| |||||||| || |||||||||||||| | Sbjct: 418 tgtacccaaagcaatgtttgagcgttttaccgagaaagcaattaaggtcataatgctgtc 477 Query: 335 acaagaggaagcgagacgcctgggtcacaactttgtcggaactgagcaagttctattggg 394 ||||||||||| | | || || || |||||||| || ||||||||| | || ||||| Sbjct: 478 tcaagaggaagctcggagacttggccataactttgttgggactgagcaaatactgttggg 537 Query: 395 tctggttggagaaggcactggtattgc 421 ||| |||||||||| ||||| ||||| Sbjct: 538 tctaattggagaagggactgggattgc 564
>ref|XM_472335.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2667 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 318 aaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcggaact 377 ||||| || ||||| ||||| || |||||||| |||||||| ||||||||||| || || Sbjct: 199 aaggtgatcatgcttgcacaggaagaagcgaggcgcctgggccacaactttgttgggacg 258 Query: 378 gagcaagttctattggg 394 |||||| ||||| |||| Sbjct: 259 gagcaaattctactggg 275
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 318 aaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcggaact 377 ||||| || ||||| ||||| || |||||||| |||||||| ||||||||||| || || Sbjct: 19615390 aaggtgatcatgcttgcacaggaagaagcgaggcgcctgggccacaactttgttgggacg 19615331 Query: 378 gagcaagttctattggg 394 |||||| ||||| |||| Sbjct: 19615330 gagcaaattctactggg 19615314
>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07, complete sequence Length = 166410 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 318 aaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcggaact 377 ||||| || ||||| ||||| || |||||||| |||||||| ||||||||||| || || Sbjct: 66116 aaggtgatcatgcttgcacaggaagaagcgaggcgcctgggccacaactttgttgggacg 66057 Query: 378 gagcaagttctattggg 394 |||||| ||||| |||| Sbjct: 66056 gagcaaattctactggg 66040
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 284 agcgatgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagagga 343 |||||||||||| | ||||| ||||| || || || || || ||||| || |||||||| Sbjct: 1355512 agcgatgttcgaacggtttaccgagaaggccatcaaagtgatcatgctggcccaagagga 1355453 Query: 344 agcgagacgcctgggtcacaactttgtcggaactgagcaa 383 ||| || | || ||||||||||| ||||||||||||||| Sbjct: 1355452 agctcgaaggcttggtcacaacttcgtcggaactgagcaa 1355413
>gb|M32603.1|TOMCD4A Tomato ATP-dependent protease (CD4A) gene, complete cds Length = 5429 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 303 actgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcac 362 ||||||||||| ||||| ||||| ||||| || ||||| || || ||||| || |||||| Sbjct: 1078 actgagaaagcaataaaagtcattatgcttgcccaagaagaggccagacgactaggtcac 1137 Query: 363 aactttgt 370 |||||||| Sbjct: 1138 aactttgt 1145
>emb|X75328.1|BNCLPA B.napus (Topas) clpA mRNA Length = 2837 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 288 atgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaagc 346 ||||| ||||| ||||||||||||||||| ||||| || ||||| || || |||||||| Sbjct: 123 atgtttgagaggtttactgagaaagctatcaaggttattatgcttgctcaggaggaagc 181
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 321 gtcataatgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcggaactgag 380 ||||| |||||||| || |||||||| | |||||||| ||||| || || ||||||||| Sbjct: 2344441 gtcattatgctcgctcaggaggaagcacgtcgcctgggacacaatttcgtaggaactgag 2344500 Query: 381 caagttctattgggtctggttggagaaggcactgg 415 ||| |||| ||||| || | |||||||| ||||| Sbjct: 2344501 caaattctcctgggtttgatgggagaaggaactgg 2344535
>gb|AF041468.1| Guillardia theta complete plastid genome Length = 121524 Score = 52.0 bits (26), Expect = 0.001 Identities = 98/122 (80%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 ||||| |||||||||||||| || || |||||||| ||||| ||||| | || | || Sbjct: 741 tttacagagaaagctataaaagttattatgctcgctcaagaagaagctcgtcgtttaggg 800 Query: 360 cacaactttgtcggaactgagcaagttctattgggtctggttggagaaggcactggtatt 419 ||||| ||||| || ||||| ||| | ||| | |||||| | |||||||| ||||||||| Sbjct: 801 cacaattttgtgggtactgaacaaatactactaggtctgatcggagaaggtactggtatt 860 Query: 420 gc 421 || Sbjct: 861 gc 862
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 50.1 bits (25), Expect = 0.006 Identities = 73/89 (82%) Strand = Plus / Minus Query: 327 atgctcgcacaagaggaagcgagacgcctgggtcacaactttgtcggaactgagcaagtt 386 |||||||| || |||||||| | |||||||| ||||| || || |||||||||||| || Sbjct: 5457309 atgctcgctcaggaggaagcacgtcgcctgggacacaatttcgtaggaactgagcaaatt 5457250 Query: 387 ctattgggtctggttggagaaggcactgg 415 || ||||| || | |||||||| ||||| Sbjct: 5457249 ctcctgggtttgatgggagaaggaactgg 5457221
>emb|AL138657.1|ATF9K21 Arabidopsis thaliana DNA chromosome 3, BAC clone F9K21 Length = 110980 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 286 cgatgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaag 345 ||||||| ||| | |||||||||||||| || |||||||||| | | || |||||||||| Sbjct: 15633 cgatgtttgagcgttttactgagaaagcaattaaggtcataacgttggctcaagaggaag 15692 Query: 346 c 346 | Sbjct: 15693 c 15693
>gb|AY741371.1| Emiliania huxleyi strain CCMP 373 chloroplast, complete genome Length = 105309 Score = 48.1 bits (24), Expect = 0.023 Identities = 69/84 (82%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 ||||| |||||||| || ||||| || ||||| || ||||||||||| || | ||||| Sbjct: 33478 tttacagagaaagcaatcaaggttatcatgcttgcccaagaggaagctcgaagattgggt 33537 Query: 360 cacaactttgtcggaactgagcaa 383 ||||| ||||| || ||||||||| Sbjct: 33538 cacaattttgttggtactgagcaa 33561
>gb|AY704571.1| Emiliania huxleyi Clp protease ATP binding subunit (clpC) gene, complete cds; chloroplast Length = 2454 Score = 48.1 bits (24), Expect = 0.023 Identities = 69/84 (82%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggt 359 ||||| |||||||| || ||||| || ||||| || ||||||||||| || | ||||| Sbjct: 13 tttacagagaaagcaatcaaggttatcatgcttgcccaagaggaagctcgaagattgggt 72 Query: 360 cacaactttgtcggaactgagcaa 383 ||||| ||||| || ||||||||| Sbjct: 73 cacaattttgttggtactgagcaa 96
>ref|NM_114414.1| Arabidopsis thaliana ATP binding / protein binding AT3G45450 mRNA, complete cds Length = 1026 Score = 46.1 bits (23), Expect = 0.092 Identities = 41/47 (87%) Strand = Plus / Plus Query: 300 tttactgagaaagctataaaggtcataatgctcgcacaagaggaagc 346 |||||||||||||| || |||||||||| | | || ||||||||||| Sbjct: 13 tttactgagaaagcaattaaggtcataacgttggctcaagaggaagc 59
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 46.1 bits (23), Expect = 0.092 Identities = 35/39 (89%) Strand = Plus / Minus Query: 312 gctataaaggtcataatgctcgcacaagaggaagcgaga 350 |||||||| ||||| ||||| || ||||||||||||||| Sbjct: 1013800 gctataaaagtcattatgcttgcccaagaggaagcgaga 1013762
>gb|AY673996.1| Gracilaria tenuistipitata var. liui chloroplast, complete genome Length = 183883 Score = 44.1 bits (22), Expect = 0.36 Identities = 52/62 (83%) Strand = Plus / Plus Query: 309 aaagctataaaggtcataatgctcgcacaagaggaagcgagacgcctgggtcacaacttt 368 ||||| ||||| || || ||||| || ||||| ||||| |||||| | |||||||||||| Sbjct: 55295 aaagcaataaaagttatcatgcttgctcaagaagaagctagacgcttaggtcacaacttt 55354 Query: 369 gt 370 || Sbjct: 55355 gt 55356
>ref|NM_124471.2| Arabidopsis thaliana CLPC; ATP binding / ATPase AT5G50920 (CLPC) mRNA, complete cds Length = 3183 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 288 atgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaagcg 347 ||||| || |||||||| ||||||||||| || || || ||||| || || |||||||| Sbjct: 435 atgtttgaaagatttacggagaaagctatcaaagttattatgcttgctcaggaggaagct 494 Query: 348 agacgcctgggtcacaactttgtcggaac 376 ||| | || || ||||| ||||| ||||| Sbjct: 495 agaagactaggccacaattttgtgggaac 523
>gb|AY102125.1| Arabidopsis thaliana AT5g50920/K3K7_7 mRNA, complete cds Length = 3125 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 288 atgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaagcg 347 ||||| || |||||||| ||||||||||| || || || ||||| || || |||||||| Sbjct: 410 atgtttgaaagatttacggagaaagctatcaaagttattatgcttgctcaggaggaagct 469 Query: 348 agacgcctgggtcacaactttgtcggaac 376 ||| | || || ||||| ||||| ||||| Sbjct: 470 agaagactaggccacaattttgtgggaac 498
>gb|AF022909.1| Arabidopsis thaliana ClpC mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 2912 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 288 atgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaagcg 347 ||||| || |||||||| ||||||||||| || || || ||||| || || |||||||| Sbjct: 383 atgtttgaaagatttacggagaaagctatcaaagttattatgcttgctcaggaggaagct 442 Query: 348 agacgcctgggtcacaactttgtcggaac 376 ||| | || || ||||| ||||| ||||| Sbjct: 443 agaagactaggccacaattttgtgggaac 471
>emb|BX833282.1|CNS09YXM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZE05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1043 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Plus Query: 288 atgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaagcg 347 ||||| || |||||||| ||||||||||| || || || ||||| || || |||||||| Sbjct: 386 atgtttgaaagatttacggagaaagctatcaaagttattatgcttgctcaggaggaagct 445 Query: 348 agacgcctgggtcacaactttgtcggaac 376 ||| | || || ||||| ||||| ||||| Sbjct: 446 agaagactaggccacaattttgtgggaac 474
>dbj|AB017063.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K3K7 Length = 68726 Score = 42.1 bits (21), Expect = 1.4 Identities = 72/89 (80%) Strand = Plus / Minus Query: 288 atgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaagcg 347 ||||| || |||||||| ||||||||||| || || || ||||| || || |||||||| Sbjct: 22010 atgtttgaaagatttacggagaaagctatcaaagttattatgcttgctcaggaggaagct 21951 Query: 348 agacgcctgggtcacaactttgtcggaac 376 ||| | || || ||||| ||||| ||||| Sbjct: 21950 agaagactaggccacaattttgtgggaac 21922
>ref|XM_537382.2| PREDICTED: Canis familiaris similar to Proteasome activator complex subunit 2 (Proteasome activator 28-beta subunit) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex beta subunit) (REG-beta), transcript variant 1 (LOC480258), mRNA Length = 912 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caggaggactccctcaatgt 129 |||||||||||||||||||| Sbjct: 300 caggaggactccctcaatgt 319
>ref|XM_855106.1| PREDICTED: Canis familiaris similar to Proteasome activator complex subunit 2 (Proteasome activator 28-beta subunit) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex beta subunit) (REG-beta), transcript variant 5 (LOC480258), mRNA Length = 744 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caggaggactccctcaatgt 129 |||||||||||||||||||| Sbjct: 132 caggaggactccctcaatgt 151
>ref|XM_855030.1| PREDICTED: Canis familiaris similar to Proteasome activator complex subunit 2 (Proteasome activator 28-beta subunit) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex beta subunit) (REG-beta), transcript variant 3 (LOC480258), mRNA Length = 738 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caggaggactccctcaatgt 129 |||||||||||||||||||| Sbjct: 126 caggaggactccctcaatgt 145
>ref|XM_854997.1| PREDICTED: Canis familiaris similar to Proteasome activator complex subunit 2 (Proteasome activator 28-beta subunit) (PA28beta) (PA28b) (Activator of multicatalytic protease subunit 2) (11S regulator complex beta subunit) (REG-beta), transcript variant 2 (LOC480258), mRNA Length = 767 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caggaggactccctcaatgt 129 |||||||||||||||||||| Sbjct: 189 caggaggactccctcaatgt 208
>emb|CR618033.1| full-length cDNA clone CS0DI020YF01 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2079 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caggaggactccctcaatgt 129 |||||||||||||||||||| Sbjct: 823 caggaggactccctcaatgt 842
>emb|BX908736.10| Zebrafish DNA sequence from clone CH211-229C8 in linkage group 18, complete sequence Length = 159047 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 ctcaatgttggcaatgtcattaaa 145 |||||||||||||||||| ||||| Sbjct: 40765 ctcaatgttggcaatgtctttaaa 40742
>gb|AC007222.5| Homo sapiens chromosome 16 clone RP11-441K8, complete sequence Length = 187191 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 tggagaaggcactggtattg 420 |||||||||||||||||||| Sbjct: 175908 tggagaaggcactggtattg 175927
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.7 Identities = 77/96 (80%) Strand = Plus / Plus Query: 288 atgttcgagagatttactgagaaagctataaaggtcataatgctcgcacaagaggaagcg 347 ||||| || |||||||| |||||||| || || || || ||| | || || |||||||| Sbjct: 2215509 atgtttgaaagatttaccgagaaagcaatcaaagtgatcatgttggcccaggaggaagcc 2215568 Query: 348 agacgcctgggtcacaactttgtcggaactgagcaa 383 | |||||||| ||||||||||| || || |||||| Sbjct: 2215569 cgtcgcctgggacacaactttgtgggtaccgagcaa 2215604
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 tggttggagaaggcactggtattg 420 |||||||||||||||||| ||||| Sbjct: 634445 tggttggagaaggcactgatattg 634468
>emb|AL136295.3|CNS01DVZ Human chromosome 14 DNA sequence BAC R-468E2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 194815 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 caggaggactccctcaatgt 129 |||||||||||||||||||| Sbjct: 64564 caggaggactccctcaatgt 64583
>dbj|AP006241.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-660I20, complete sequence Length = 171287 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 aaagctataaaggtcataat 328 |||||||||||||||||||| Sbjct: 10908 aaagctataaaggtcataat 10889
>dbj|AP000500.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:603 to 320, anti-oncogene region, section 3/3 Length = 254437 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 aaagctataaaggtcataat 328 |||||||||||||||||||| Sbjct: 219225 aaagctataaaggtcataat 219206 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,677,004 Number of Sequences: 3902068 Number of extensions: 2677004 Number of successful extensions: 44629 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 44451 Number of HSP's gapped (non-prelim): 173 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
