>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 54     accatgcagccgatctggccatc 76
              |||||||||||||||||||||||
Sbjct: 471912 accatgcagccgatctggccatc 471890

>emb|AL583822.6| Human DNA sequence from clone RP11-117M4 on chromosome 6, complete
             sequence
          Length = 126614

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 138   aacagaaaaatgcatgtgcaagggtag 164
             ||||||||||||| |||||||||||||
Sbjct: 80418 aacagaaaaatgcttgtgcaagggtag 80392

>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02,
             complete sequence
          Length = 99795

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   caacagaaaaatgcatgtgca 157
             |||||||||||||||||||||
Sbjct: 78112 caacagaaaaatgcatgtgca 78132

>gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, complete sequence
          Length = 134714

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 580   gcacatgttttcatttgcttatgct 604
             |||||||||||||| ||||||||||
Sbjct: 72374 gcacatgttttcatgtgcttatgct 72350

>emb|CR925784.13| Zebrafish DNA sequence from clone DKEYP-104A3 in linkage group 11,
              complete sequence
          Length = 174101

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 607    tcacagacttcaacactgtgt 627
              |||||||||||||||||||||
Sbjct: 130620 tcacagacttcaacactgtgt 130640

>emb|Z82200.1|HS333E23 Human DNA sequence from clone RP3-333E23 on chromosome Xq21.1 Contains
             the P2RY10 gene for purinergic receptor P2Y G-protein
             coupled 10, complete sequence
          Length = 128011

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   agaagaaataaaacaacacaa 199
             |||||||||||||||||||||
Sbjct: 55468 agaagaaataaaacaacacaa 55488

>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 54     accatgcagccgatctggccatcga 78
              |||||||||||||||||||| ||||
Sbjct: 602363 accatgcagccgatctggccgtcga 602387

>emb|AL353697.21| Human DNA sequence from clone RP11-364F8 on chromosome 13 Contains part
             of the PCCA gene for propionyl Coenzyme A carboxylase
             alpha polypeptide, complete sequence
          Length = 132765

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 570   ctatatgtcagcacatgtttt 590
             |||||||||||||||||||||
Sbjct: 52756 ctatatgtcagcacatgtttt 52776

>gb|AC092397.1|AC092397 Drosophila melanogaster, chromosome 2L, region 26C-26D, BAC clone
              BACR22N03, complete sequence
          Length = 167201

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 172    aaaaatcagaagaaataaaac 192
              |||||||||||||||||||||
Sbjct: 112383 aaaaatcagaagaaataaaac 112403

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 137      caacagaaaaatgcatgtgca 157
                |||||||||||||||||||||
Sbjct: 24475439 caacagaaaaatgcatgtgca 24475459

>gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence
          Length = 1758

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 470  ccatctatatgccgcatctct 490
            |||||||||||||||||||||
Sbjct: 1000 ccatctatatgccgcatctct 1020

>gb|AE003615.3| Drosophila melanogaster chromosome 2L, section 24 of 83 of the complete
             sequence
          Length = 270751

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 172   aaaaatcagaagaaataaaac 192
             |||||||||||||||||||||
Sbjct: 27666 aaaaatcagaagaaataaaac 27686

>gb|AC004303.1|AC004303 Drosophila melanogaster DNA sequence (P1 DS06475 (D195)), complete
             sequence
          Length = 66899

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 172   aaaaatcagaagaaataaaac 192
             |||||||||||||||||||||
Sbjct: 59486 aaaaatcagaagaaataaaac 59466

>gb|AC155076.17| Mus musculus chromosome 1, clone RP24-257G18, complete sequence
          Length = 224817

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 332    aacagacaaacaagtgttatc 352
              |||||||||||||||||||||
Sbjct: 191386 aacagacaaacaagtgttatc 191406

>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence
          Length = 189323

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   aagaaataaaacaacacaacaaga 204
             |||||||||||||| |||||||||
Sbjct: 92992 aagaaataaaacaaaacaacaaga 93015

>gb|AC107684.7| Mus musculus chromosome 5, clone RP24-389O5, complete sequence
          Length = 121239

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 255   atgtaaatcatattttgaga 274
             ||||||||||||||||||||
Sbjct: 29790 atgtaaatcatattttgaga 29771

>gb|AC115777.16| Mus musculus chromosome 6, clone RP23-139O6, complete sequence
          Length = 216399

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   agacttaaactactatgtat 546
             ||||||||||||||||||||
Sbjct: 94210 agacttaaactactatgtat 94191

>gb|AC146276.2| Pan troglodytes BAC clone CH251-149B14 from X, complete sequence
          Length = 180335

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 582    acatgttttcatttgcttat 601
              ||||||||||||||||||||
Sbjct: 174640 acatgttttcatttgcttat 174659

>gb|AC109153.13| Mus musculus chromosome 15, clone RP23-51J23, complete sequence
          Length = 222164

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   aaaaatcagaagaaataaaa 191
             ||||||||||||||||||||
Sbjct: 40898 aaaaatcagaagaaataaaa 40917

>gb|AC139334.3| Mus musculus BAC clone RP23-449C21 from chromosome 18, complete
             sequence
          Length = 194665

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   ttagaaaaatcagaagaaat 187
             ||||||||||||||||||||
Sbjct: 98383 ttagaaaaatcagaagaaat 98402

>emb|AL158033.18| Human DNA sequence from clone RP3-336G18 on chromosome 6, complete
             sequence
          Length = 102282

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   ttagaaaaatcagaagaaat 187
             ||||||||||||||||||||
Sbjct: 37917 ttagaaaaatcagaagaaat 37936

>emb|AL035551.6|HS1100E15 Human DNA sequence from clone RP5-1100E15 on chromosome Xq22.1-22.3
             Contains a checkpoint suppressor 1 (CHES1) pseudogene, a
             nuclear RNA export factor (NXF) family pseudogene, the
             gene for a novel protein (FLJ12969, FLJ39373) and a
             histone 3 H3 (HIST3H3) pseudogene, complete sequence
          Length = 103344

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   acatgttttcatttgcttat 601
             ||||||||||||||||||||
Sbjct: 10395 acatgttttcatttgcttat 10414

>emb|BX322654.15| Zebrafish DNA sequence from clone DKEY-46G23 in linkage group 5,
             complete sequence
          Length = 118113

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 585   tgttttcatttgcttatgct 604
             ||||||||||||||||||||
Sbjct: 43374 tgttttcatttgcttatgct 43393

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      accatgcagccgatctggcc 73
               ||||||||||||||||||||
Sbjct: 4367638 accatgcagccgatctggcc 4367619

>gb|AC008577.7| Homo sapiens chromosome 5 clone CTC-558D17, complete sequence
          Length = 77686

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 582   acatgttttcatttgcttat 601
             ||||||||||||||||||||
Sbjct: 58954 acatgttttcatttgcttat 58935

>gb|AC160090.4| Mus musculus 6 BAC RP23-322E20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 206093

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 527    agacttaaactactatgtat 546
              ||||||||||||||||||||
Sbjct: 172840 agacttaaactactatgtat 172821

>ref|NM_174393.2| Bos taurus mitochondrial translational initiation factor 2 (MTIF2),
           mRNA
          Length = 2406

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 580 gcacatgttttcatttgcttatgc 603
           |||||||||||||| |||||||||
Sbjct: 280 gcacatgttttcatctgcttatgc 303

>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence
          Length = 249504

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   aagaaataaaacaacacaacaaga 204
             |||||||||||||| |||||||||
Sbjct: 14674 aagaaataaaacaaaacaacaaga 14697

>gb|AC112267.4| Mus musculus BAC clone RP24-84L8 from 9, complete sequence
          Length = 188376

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 526    tagacttaaactactatgtatcag 549
              |||| |||||||||||||||||||
Sbjct: 143871 tagatttaaactactatgtatcag 143894

>dbj|AB251495.1| Physcomitrella patens mitochondrial DNA, complete genome
          Length = 105340

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ttagaaaaatcagaagaaat 187
             ||||||||||||||||||||
Sbjct: 16572 ttagaaaaatcagaagaaat 16553

>gb|L37835.1|BOVIF2MT Bovine nuclear-encoded mitochondrial translational initiation
           factor 2 mRNA, complete CDS
          Length = 2406

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 580 gcacatgttttcatttgcttatgc 603
           |||||||||||||| |||||||||
Sbjct: 280 gcacatgttttcatctgcttatgc 303

>gb|AC160528.9| Mus musculus chromosome 15, clone RP23-310L8, complete sequence
          Length = 174502

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   aaaaatcagaagaaataaaa 191
             ||||||||||||||||||||
Sbjct: 41596 aaaaatcagaagaaataaaa 41577

>emb|AL627078.10| Mouse DNA sequence from clone RP23-138K13 on chromosome 4, complete
            sequence
          Length = 90129

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 297  tagtgacacaatgacacagtcaaa 320
            |||||||||||||||| |||||||
Sbjct: 4297 tagtgacacaatgacaaagtcaaa 4320


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,500,701
Number of Sequences: 3902068
Number of extensions: 6500701
Number of successful extensions: 134602
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134459
Number of HSP's gapped (non-prelim): 143
length of query: 644
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 621
effective length of database: 17,143,297,704
effective search space: 10645987874184
effective search space used: 10645987874184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)