ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25h20 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_193577.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1209 Score = 248 bits (125), Expect = 7e-63 Identities = 213/241 (88%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 1 aagtatcctcatggcgtctggcagtacgaagtgagctatactgcaggtgcttttgcataa 60 ||||||| | |||||||||| |||| || ||||||||||||||||||||||||||||||| Sbjct: 857 aagtatctttatggcgtctgtcagttcgcagtgagctatactgcaggtgcttttgcataa 916 Query: 61 atgacaaccagcaggcagattggccacctcttccaactgtccctgatgacattgaagctg 120 |||||||| || | || |||||||||||||||||||||||||||||||| |||||| ||| Sbjct: 917 atgacaacaagtatgcggattggccacctcttccaactgtccctgatgaaattgaacctg 976 Query: 121 aagtccgtgttcctgaagtggatatcctttcgctcttagatgtgcctcctggaaaaatgg 180 | || ||||||||| ||||||||||| || |||| |||||||||||||| ||||||| Sbjct: 977 atgtttatgttcctgaggtggatatcctgtcagtcttggatgtgcctcctggcaaaatgg 1036 Query: 181 gacgcgttattggcagaaaaggatcgtcaataatggcccgtgaaagaatcttgcaatgtt 240 | || |||||||||||||||||||| |||||||||| ||||||| ||||||||||||| Sbjct: 1037 ggcgtgttattggcagaaaaggatcatcaataatgg-aagtgaaagcatcttgcaatgtt 1095 Query: 241 g 241 | Sbjct: 1096 g 1096
>dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047H21, full insert sequence Length = 1245 Score = 248 bits (125), Expect = 7e-63 Identities = 213/241 (88%), Gaps = 1/241 (0%) Strand = Plus / Plus Query: 1 aagtatcctcatggcgtctggcagtacgaagtgagctatactgcaggtgcttttgcataa 60 ||||||| | |||||||||| |||| || ||||||||||||||||||||||||||||||| Sbjct: 728 aagtatctttatggcgtctgtcagttcgcagtgagctatactgcaggtgcttttgcataa 787 Query: 61 atgacaaccagcaggcagattggccacctcttccaactgtccctgatgacattgaagctg 120 |||||||| || | || |||||||||||||||||||||||||||||||| |||||| ||| Sbjct: 788 atgacaacaagtatgcggattggccacctcttccaactgtccctgatgaaattgaacctg 847 Query: 121 aagtccgtgttcctgaagtggatatcctttcgctcttagatgtgcctcctggaaaaatgg 180 | || ||||||||| ||||||||||| || |||| |||||||||||||| ||||||| Sbjct: 848 atgtttatgttcctgaggtggatatcctgtcagtcttggatgtgcctcctggcaaaatgg 907 Query: 181 gacgcgttattggcagaaaaggatcgtcaataatggcccgtgaaagaatcttgcaatgtt 240 | || |||||||||||||||||||| |||||||||| ||||||| ||||||||||||| Sbjct: 908 ggcgtgttattggcagaaaaggatcatcaataatgg-aagtgaaagcatcttgcaatgtt 966 Query: 241 g 241 | Sbjct: 967 g 967
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 137 bits (69), Expect = 2e-29 Identities = 96/105 (91%) Strand = Plus / Minus Query: 1 aagtatcctcatggcgtctggcagtacgaagtgagctatactgcaggtgcttttgcataa 60 ||||||| | |||||||||| |||| || ||||||||||||||||||||||||||||||| Sbjct: 21696916 aagtatctttatggcgtctgtcagttcgcagtgagctatactgcaggtgcttttgcataa 21696857 Query: 61 atgacaaccagcaggcagattggccacctcttccaactgtccctg 105 |||||||| || | || |||||||||||||||||||||||||||| Sbjct: 21696856 atgacaacaagtatgcggattggccacctcttccaactgtccctg 21696812 Score = 105 bits (53), Expect = 6e-20 Identities = 80/89 (89%) Strand = Plus / Minus Query: 128 tgttcctgaagtggatatcctttcgctcttagatgtgcctcctggaaaaatgggacgcgt 187 ||||||||| ||||||||||| || |||| |||||||||||||| |||||||| || || Sbjct: 21696432 tgttcctgaggtggatatcctgtcagtcttggatgtgcctcctggcaaaatggggcgtgt 21696373 Query: 188 tattggcagaaaaggatcgtcaataatgg 216 |||||||||||||||||| |||||||||| Sbjct: 21696372 tattggcagaaaaggatcatcaataatgg 21696344
>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0002B05 Length = 141275 Score = 137 bits (69), Expect = 2e-29 Identities = 96/105 (91%) Strand = Plus / Minus Query: 1 aagtatcctcatggcgtctggcagtacgaagtgagctatactgcaggtgcttttgcataa 60 ||||||| | |||||||||| |||| || ||||||||||||||||||||||||||||||| Sbjct: 48967 aagtatctttatggcgtctgtcagttcgcagtgagctatactgcaggtgcttttgcataa 48908 Query: 61 atgacaaccagcaggcagattggccacctcttccaactgtccctg 105 |||||||| || | || |||||||||||||||||||||||||||| Sbjct: 48907 atgacaacaagtatgcggattggccacctcttccaactgtccctg 48863 Score = 105 bits (53), Expect = 6e-20 Identities = 80/89 (89%) Strand = Plus / Minus Query: 128 tgttcctgaagtggatatcctttcgctcttagatgtgcctcctggaaaaatgggacgcgt 187 ||||||||| ||||||||||| || |||| |||||||||||||| |||||||| || || Sbjct: 48483 tgttcctgaggtggatatcctgtcagtcttggatgtgcctcctggcaaaatggggcgtgt 48424 Query: 188 tattggcagaaaaggatcgtcaataatgg 216 |||||||||||||||||| |||||||||| Sbjct: 48423 tattggcagaaaaggatcatcaataatgg 48395
>gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence Length = 428 Score = 48.1 bits (24), Expect = 0.013 Identities = 58/68 (85%), Gaps = 1/68 (1%) Strand = Plus / Plus Query: 174 aaaatgggacgcgttattggcagaaaaggatcgtcaataatggcccgtgaaagaatcttg 233 ||||||||||| |||||||||||||| || || | ||||||| |||||||||||||| Sbjct: 11 aaaatgggacgagttattggcagaaaggggtcaactataatgg-ttgtgaaagaatcttg 69 Query: 234 caatgttg 241 ||| |||| Sbjct: 70 caacgttg 77
>ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g03170) partial mRNA Length = 564 Score = 46.1 bits (23), Expect = 0.050 Identities = 23/23 (100%) Strand = Plus / Minus Query: 180 ggacgcgttattggcagaaaagg 202 ||||||||||||||||||||||| Sbjct: 161 ggacgcgttattggcagaaaagg 139
>gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence Length = 1244 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 aaaatgggacgcgttattggcagaa 198 ||||||||||| ||||||||||||| Sbjct: 865 aaaatgggacgtgttattggcagaa 889
>gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186864 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 70 agcaggcagattggccacctc 90 ||||||||||||||||||||| Sbjct: 135044 agcaggcagattggccacctc 135064
>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 131209 Score = 42.1 bits (21), Expect = 0.78 Identities = 21/21 (100%) Strand = Plus / Plus Query: 92 tccaactgtccctgatgacat 112 ||||||||||||||||||||| Sbjct: 113138 tccaactgtccctgatgacat 113158
>gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease domain-containing protein-like mRNA, complete cds Length = 1249 Score = 42.1 bits (21), Expect = 0.78 Identities = 24/25 (96%) Strand = Plus / Plus Query: 174 aaaatgggacgcgttattggcagaa 198 ||||||||||| ||||||||||||| Sbjct: 843 aaaatgggacgtgttattggcagaa 867
>gb|AY440962.1| Armigeres subalbatus ASAP ID: 40579 conserved unknown mRNA sequence Length = 622 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 aatggcccgtgaaagaatct 231 |||||||||||||||||||| Sbjct: 609 aatggcccgtgaaagaatct 590
>emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119I23 on chromosome 10, complete sequence Length = 98818 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gaaagaatcttgcaatgttg 241 |||||||||||||||||||| Sbjct: 23487 gaaagaatcttgcaatgttg 23506
>emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761J1224 (from clone DKFZp761J1224) Length = 5412 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gaaagaatcttgcaatgttg 241 |||||||||||||||||||| Sbjct: 2029 gaaagaatcttgcaatgttg 2048
>emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on chromosome 4, complete sequence Length = 192031 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 gccacctcttccaactgtcc 102 |||||||||||||||||||| Sbjct: 53864 gccacctcttccaactgtcc 53883
>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence Length = 136822 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 ctgatgacattgaagctgaa 122 |||||||||||||||||||| Sbjct: 133815 ctgatgacattgaagctgaa 133796
>gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining protein (Sry) gene, partial cds Length = 153 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 tgtgcctcctggaaaaatgg 180 |||||||||||||||||||| Sbjct: 140 tgtgcctcctggaaaaatgg 121 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,923,733 Number of Sequences: 3902068 Number of extensions: 1923733 Number of successful extensions: 32010 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31979 Number of HSP's gapped (non-prelim): 29 length of query: 241 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 219 effective length of database: 17,147,199,772 effective search space: 3755236750068 effective search space used: 3755236750068 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
