ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd25g23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108687.1| Zea mays PCO149432 mRNA sequence Length = 666 Score = 220 bits (111), Expect = 3e-54 Identities = 159/175 (90%) Strand = Plus / Plus Query: 312 cggcatggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgcc 371 ||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||| || Sbjct: 151 cggcatggcggactgggggccggtgctgatcgggctggtgctcttcatcctgctctcccc 210 Query: 372 ggggctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagac 431 ||| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct: 211 gggcctgctcttccagatccccggcaagggccggatcatcgagttcggcaacttccagac 270 Query: 432 cagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||| Sbjct: 271 cagcggcctctccatcctcatccacgccgtcatctacttcgccctcctcgccatc 325
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 212 bits (107), Expect = 8e-52 Identities = 155/171 (90%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 99087 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 99146 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 99147 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 99206 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| Sbjct: 99207 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatc 99257
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018F17, complete sequence Length = 104291 Score = 212 bits (107), Expect = 8e-52 Identities = 155/171 (90%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 5387 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 5446 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 5447 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 5506 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| Sbjct: 5507 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatc 5557
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 212 bits (107), Expect = 8e-52 Identities = 155/171 (90%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 17031431 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 17031490 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 17031491 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 17031550 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| Sbjct: 17031551 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatc 17031601
>dbj|AK062973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E07, full insert sequence Length = 562 Score = 212 bits (107), Expect = 8e-52 Identities = 155/171 (90%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 103 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 162 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 163 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 222 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| Sbjct: 223 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatc 273
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 212 bits (107), Expect = 8e-52 Identities = 155/171 (90%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 17126132 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 17126191 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 17126192 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 17126251 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| Sbjct: 17126252 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatc 17126302
>ref|XM_475056.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 219 Score = 109 bits (55), Expect = 9e-21 Identities = 118/139 (84%) Strand = Plus / Plus Query: 348 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 407 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 33 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 92 Query: 408 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 467 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 93 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 152 Query: 468 cttcgccctcatcgccatc 486 |||||||||| ||||||| Sbjct: 153 cttcgccctcgacgccatc 171
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 109 bits (55), Expect = 9e-21 Identities = 118/139 (84%) Strand = Plus / Plus Query: 348 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 407 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 158575 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 158634 Query: 408 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 467 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 158635 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 158694 Query: 468 cttcgccctcatcgccatc 486 |||||||||| ||||||| Sbjct: 158695 cttcgccctcgacgccatc 158713 Score = 69.9 bits (35), Expect = 7e-09 Identities = 128/159 (80%) Strand = Plus / Plus Query: 322 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 381 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 162130 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 162189 Query: 382 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 441 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 162190 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 162249 Query: 442 tccatactcgtccacgccgtcatctacttcgccctcatc 480 ||||| |||||||| || |||||||||||||||||||| Sbjct: 162250 tccatcgtcgtccactccatcatctacttcgccctcatc 162288
>dbj|AK062996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-G10, full insert sequence Length = 517 Score = 109 bits (55), Expect = 9e-21 Identities = 118/139 (84%) Strand = Plus / Plus Query: 348 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 407 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 149 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 208 Query: 408 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 467 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 209 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 268 Query: 468 cttcgccctcatcgccatc 486 |||||||||| ||||||| Sbjct: 269 cttcgccctcgacgccatc 287
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 109 bits (55), Expect = 9e-21 Identities = 118/139 (84%) Strand = Plus / Plus Query: 348 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 407 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 40759 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 40818 Query: 408 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 467 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 40819 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 40878 Query: 468 cttcgccctcatcgccatc 486 |||||||||| ||||||| Sbjct: 40879 cttcgccctcgacgccatc 40897 Score = 69.9 bits (35), Expect = 7e-09 Identities = 128/159 (80%) Strand = Plus / Plus Query: 322 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 381 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 44314 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 44373 Query: 382 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 441 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 44374 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 44433 Query: 442 tccatactcgtccacgccgtcatctacttcgccctcatc 480 ||||| |||||||| || |||||||||||||||||||| Sbjct: 44434 tccatcgtcgtccactccatcatctacttcgccctcatc 44472
>dbj|AK071540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101E05, full insert sequence Length = 683 Score = 105 bits (53), Expect = 1e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 348 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 407 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 152 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 211 Query: 408 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 467 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 212 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 271 Query: 468 cttcgccct 476 ||||||||| Sbjct: 272 cttcgccct 280
>ref|XM_506811.1| PREDICTED Oryza sativa (japonica cultivar-group), P0047E05.40 mRNA Length = 537 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 111 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 170 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 171 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 230 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| || || | ||||||||||||||||||||||||||||||||| ||||| Sbjct: 231 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatc 281
>ref|XM_465906.1| Oryza sativa (japonica cultivar-group), mRNA Length = 521 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 90 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 149 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 150 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 209 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| || || | ||||||||||||||||||||||||||||||||| ||||| Sbjct: 210 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatc 260
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Minus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 18245747 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 18245688 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 18245687 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 18245628 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| || || | ||||||||||||||||||||||||||||||||| ||||| Sbjct: 18245627 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatc 18245577 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 18311316 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 18311375 Query: 376 ctgctg 381 |||||| Sbjct: 18311376 ctgctg 18311381 Score = 56.0 bits (28), Expect = 1e-04 Identities = 102/124 (82%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 355 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 413 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 18281686 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 18281744 Query: 414 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctacttcgc 473 |||||||||| | ||||||||| ||||| | ||||||||||||||| ||| ||||| Sbjct: 18281745 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtcttcttcttcgt 18281804 Query: 474 cctc 477 |||| Sbjct: 18281805 cctc 18281808
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Minus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 46960 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 46901 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 46900 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 46841 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| || || | ||||||||||||||||||||||||||||||||| ||||| Sbjct: 46840 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatc 46790 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 112529 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 112588 Query: 376 ctgctg 381 |||||| Sbjct: 112589 ctgctg 112594 Score = 56.0 bits (28), Expect = 1e-04 Identities = 102/124 (82%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 355 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 413 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 82899 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 82957 Query: 414 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctacttcgc 473 |||||||||| | ||||||||| ||||| | ||||||||||||||| ||| ||||| Sbjct: 82958 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtcttcttcttcgt 83017 Query: 474 cctc 477 |||| Sbjct: 83018 cctc 83021
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Minus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 169148 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 169089 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 169088 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 169029 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| || || | ||||||||||||||||||||||||||||||||| ||||| Sbjct: 169028 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatc 168978
>dbj|AK121771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092F10, full insert sequence Length = 538 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 112 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 171 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 172 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 231 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| || || | ||||||||||||||||||||||||||||||||| ||||| Sbjct: 232 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatc 282
>dbj|AK063931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D03, full insert sequence Length = 530 Score = 77.8 bits (39), Expect = 3e-11 Identities = 138/171 (80%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 88 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 147 Query: 376 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 435 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 148 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 207 Query: 436 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatc 486 ||| || || | ||||||||||||||||||||||||||||||||| ||||| Sbjct: 208 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatc 258
>ref|XM_475057.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 210 Score = 69.9 bits (35), Expect = 7e-09 Identities = 128/159 (80%) Strand = Plus / Plus Query: 322 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 381 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 7 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 66 Query: 382 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 441 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 67 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 126 Query: 442 tccatactcgtccacgccgtcatctacttcgccctcatc 480 ||||| |||||||| || |||||||||||||||||||| Sbjct: 127 tccatcgtcgtccactccatcatctacttcgccctcatc 165
>dbj|AK066339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062F19, full insert sequence Length = 641 Score = 69.9 bits (35), Expect = 7e-09 Identities = 128/159 (80%) Strand = Plus / Plus Query: 322 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 381 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 189 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 248 Query: 382 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 441 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 249 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 308 Query: 442 tccatactcgtccacgccgtcatctacttcgccctcatc 480 ||||| |||||||| || |||||||||||||||||||| Sbjct: 309 tccatcgtcgtccactccatcatctacttcgccctcatc 347
>ref|XM_463643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 228 Score = 67.9 bits (34), Expect = 3e-08 Identities = 90/106 (84%), Gaps = 2/106 (1%) Strand = Plus / Plus Query: 367 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 425 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 70 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 128 Query: 426 ccagaccagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||| |||| |||| ||||||||||||||||||| |||| Sbjct: 129 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttc 174
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 90/106 (84%), Gaps = 2/106 (1%) Strand = Plus / Plus Query: 367 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 425 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 40371673 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 40371731 Query: 426 ccagaccagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||| |||| |||| ||||||||||||||||||| |||| Sbjct: 40371732 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttc 40371777
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1455F06 Length = 140848 Score = 67.9 bits (34), Expect = 3e-08 Identities = 90/106 (84%), Gaps = 2/106 (1%) Strand = Plus / Plus Query: 367 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 425 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 80637 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 80695 Query: 426 ccagaccagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||| |||| |||| ||||||||||||||||||| |||| Sbjct: 80696 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttc 80741
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0592G05 Length = 146220 Score = 67.9 bits (34), Expect = 3e-08 Identities = 90/106 (84%), Gaps = 2/106 (1%) Strand = Plus / Plus Query: 367 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 425 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 22914 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 22972 Query: 426 ccagaccagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||| |||| |||| ||||||||||||||||||| |||| Sbjct: 22973 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttc 23018
>dbj|AK060288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-C11, full insert sequence Length = 524 Score = 67.9 bits (34), Expect = 3e-08 Identities = 90/106 (84%), Gaps = 2/106 (1%) Strand = Plus / Plus Query: 367 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 425 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 148 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 206 Query: 426 ccagaccagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||| |||| |||| ||||||||||||||||||| |||| Sbjct: 207 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttc 252
>ref|XM_472281.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 210 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 411 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 470 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 96 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 155 Query: 471 cgccctcatcgccatc 486 ||| ||| || ||||| Sbjct: 156 cgcactcctcaccatc 171
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 411 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 470 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 164743 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 164684 Query: 471 cgccctcatcgccatc 486 ||| ||| || ||||| Sbjct: 164683 cgcactcctcaccatc 164668
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 411 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 470 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 19072818 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 19072759 Query: 471 cgccctcatcgccatc 486 ||| ||| || ||||| Sbjct: 19072758 cgcactcctcaccatc 19072743
>dbj|AK063862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D12, full insert sequence Length = 504 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 411 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 470 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 143 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 202 Query: 471 cgccctcatcgccatc 486 ||| ||| || ||||| Sbjct: 203 cgcactcctcaccatc 218
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Minus Query: 411 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 470 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 6339 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 6280 Query: 471 cgccctcatcgccatc 486 ||| ||| || ||||| Sbjct: 6279 cgcactcctcaccatc 6264
>gb|AY021987.1| Oryza sativa microsatellite MRG4312 containing (TC)X12, genomic sequence Length = 224 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcct 362 |||||||| |||| |||||||||||| ||||||||||| |||||||| Sbjct: 49 atggcggattgggggccggtgttcatagggctggtgctgttcatcct 3
>gb|AY104142.1| Zea mays PCO087598 mRNA sequence Length = 630 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 412 gagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctacttc 471 |||||||||| | | || ||||||||| | |||| ||||||||||||||| |||||||| Sbjct: 214 gagttcggcagcatgcacaccagcggcctggccatcctcgtccacgccgtcctctacttc 273 Query: 472 gccctcatcgccatc 486 || |||||| ||||| Sbjct: 274 gcgctcatcaccatc 288
>dbj|AK105187.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F09, full insert sequence Length = 492 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 316 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 375 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 34 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 93 Query: 376 ctgctg 381 |||||| Sbjct: 94 ctgctg 99
>ref|XM_465910.1| Oryza sativa (japonica cultivar-group), mRNA Length = 213 Score = 56.0 bits (28), Expect = 1e-04 Identities = 102/124 (82%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 355 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 413 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 43 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 101 Query: 414 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctacttcgc 473 |||||||||| | ||||||||| ||||| | ||||||||||||||| ||| ||||| Sbjct: 102 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtcttcttcttcgt 161 Query: 474 cctc 477 |||| Sbjct: 162 cctc 165
>ref|XM_477594.1| Oryza sativa (japonica cultivar-group), mRNA Length = 237 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 430 accagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||||| ||||||| |||||||||||| || |||||||| Sbjct: 124 accagcggcctctccatcctcgtccacgccatcctctacttc 165
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 430 accagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||||| ||||||| |||||||||||| || |||||||| Sbjct: 11736136 accagcggcctctccatcctcgtccacgccatcctctacttc 11736177
>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0680C01 Length = 145580 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 430 accagcggcatctccatactcgtccacgccgtcatctacttc 471 ||||||||| ||||||| |||||||||||| || |||||||| Sbjct: 94295 accagcggcctctccatcctcgtccacgccatcctctacttc 94336
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 48.1 bits (24), Expect = 0.027 Identities = 27/28 (96%) Strand = Plus / Minus Query: 459 cgtcatctacttcgccctcatcgccatc 486 |||||||| ||||||||||||||||||| Sbjct: 1949041 cgtcatcttcttcgccctcatcgccatc 1949014
>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence Length = 157092 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 222 cacagagcaggtgaaggaaccagctgc 248 ||||||||||||||||| ||||||||| Sbjct: 148017 cacagagcaggtgaaggcaccagctgc 147991
>gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, complete sequence Length = 161297 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 222 cacagagcaggtgaaggaaccagctgc 248 ||||||||||||||||| ||||||||| Sbjct: 52416 cacagagcaggtgaaggcaccagctgc 52390
>ref|XM_845813.1| PREDICTED: Canis familiaris similar to ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6, transcript variant 3 (LOC491324), mRNA Length = 1144 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 468 cttcgccctcatcgccatcctcatcc 493 ||||||||||||| |||||||||||| Sbjct: 260 cttcgccctcatcaccatcctcatcc 285
>ref|XM_548445.2| PREDICTED: Canis familiaris similar to ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6, transcript variant 1 (LOC491324), mRNA Length = 1093 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 468 cttcgccctcatcgccatcctcatcc 493 ||||||||||||| |||||||||||| Sbjct: 223 cttcgccctcatcaccatcctcatcc 248
>ref|XM_857490.1| PREDICTED: Canis familiaris similar to ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6, transcript variant 4 (LOC491324), mRNA Length = 1025 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 468 cttcgccctcatcgccatcctcatcc 493 ||||||||||||| |||||||||||| Sbjct: 240 cttcgccctcatcaccatcctcatcc 265
>gb|AF527443.1| Phaseolus vulgaris clone PvDR-10 hypothetical protein mRNA, complete cds Length = 467 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 454 cacgccgtcatctacttcgccctcatcgccatc 486 ||||||||||||||||||| |||||| ||||| Sbjct: 172 cacgccgtcatctacttcggtctcatcaccatc 204
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 468 cttcgccctcatcgccatcctcatc 492 |||| |||||||||||||||||||| Sbjct: 5207173 cttccccctcatcgccatcctcatc 5207197
>gb|AC112081.8| Rattus norvegicus 7 BAC CH230-192B8 (Children's Hospital Oakland Research Institute) complete sequence Length = 150311 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 ggtcctacaatcacagagca 230 |||||||||||||||||||| Sbjct: 124448 ggtcctacaatcacagagca 124429
>gb|AC164637.3| Mus musculus BAC clone RP23-128I20 from chromosome 13, complete sequence Length = 222651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 cagagcaggtgaaggaacca 243 |||||||||||||||||||| Sbjct: 62952 cagagcaggtgaaggaacca 62971
>gb|AC016939.8| Homo sapiens X BAC RP5-1014O16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118440 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cacaggtcctacaatcacag 226 |||||||||||||||||||| Sbjct: 70021 cacaggtcctacaatcacag 70040
>gb|AC016940.7| Homo sapiens X PAC RP5-937E21 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 111560 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cacaggtcctacaatcacag 226 |||||||||||||||||||| Sbjct: 71233 cacaggtcctacaatcacag 71252
>gb|AE008845.1| Salmonella typhimurium LT2, section 149 of 220 of the complete genome Length = 23018 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcggactgggcgccggtgtt 338 |||||||||||||||||||| Sbjct: 21676 gcggactgggcgccggtgtt 21657
>gb|AC159230.2| Mus musculus BAC clone RP24-378I19 from chromosome 13, complete sequence Length = 190521 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 cagagcaggtgaaggaacca 243 |||||||||||||||||||| Sbjct: 161880 cagagcaggtgaaggaacca 161899
>emb|AL627277.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 13/20 Length = 230050 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcggactgggcgccggtgtt 338 |||||||||||||||||||| Sbjct: 217013 gcggactgggcgccggtgtt 216994
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome Length = 101016 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 ggtgttcatcgggctggtgc 352 |||||||||||||||||||| Sbjct: 36761 ggtgttcatcgggctggtgc 36742
>gb|AC087410.1|AC087410 Homo sapiens chromosome X clone Qc18F9 map Xq28, complete sequence Length = 40438 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cacaggtcctacaatcacag 226 |||||||||||||||||||| Sbjct: 37605 cacaggtcctacaatcacag 37586
>gb|AC009478.4| Homo sapiens BAC clone RP11-255L1 from 2, complete sequence Length = 162608 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 agggcaggatggtggagttc 417 |||||||||||||||||||| Sbjct: 82231 agggcaggatggtggagttc 82250
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcggactgggcgccggtgtt 338 |||||||||||||||||||| Sbjct: 3146090 gcggactgggcgccggtgtt 3146071
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gcggactgggcgccggtgtt 338 |||||||||||||||||||| Sbjct: 3178508 gcggactgggcgccggtgtt 3178489
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 tgttcatcgggctggtgctc 354 |||||||||||||||||||| Sbjct: 2866742 tgttcatcgggctggtgctc 2866723
>gb|U71148.1|HSU71148 Human Xq28 cosmids U225B5 and U236A12, complete sequence Length = 76133 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cacaggtcctacaatcacag 226 |||||||||||||||||||| Sbjct: 73832 cacaggtcctacaatcacag 73851
>gb|U69568.1|HSU69568 Human Xq28 cosmid U168D11, complete sequence Length = 43927 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cacaggtcctacaatcacag 226 |||||||||||||||||||| Sbjct: 2147 cacaggtcctacaatcacag 2166
>gb|U09309.1|STU09309 Salmonella typhimurium LT2 ygiJ and ygiK genes, complete cds, and parF gene, partial cds Length = 3184 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gcggactgggcgccggtgtt 338 |||||||||||||||||||| Sbjct: 484 gcggactgggcgccggtgtt 503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,384,366 Number of Sequences: 3902068 Number of extensions: 3384366 Number of successful extensions: 68662 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68253 Number of HSP's gapped (non-prelim): 396 length of query: 493 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 471 effective length of database: 17,147,199,772 effective search space: 8076331092612 effective search space used: 8076331092612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
