ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25g12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108687.1| Zea mays PCO149432 mRNA sequence Length = 666 Score = 196 bits (99), Expect = 5e-47 Identities = 144/159 (90%) Strand = Plus / Plus Query: 329 cggcatggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgcc 388 ||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||| || Sbjct: 151 cggcatggcggactgggggccggtgctgatcgggctggtgctcttcatcctgctctcccc 210 Query: 389 ggggctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagac 448 ||| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct: 211 gggcctgctcttccagatccccggcaagggccggatcatcgagttcggcaacttccagac 270 Query: 449 cagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||| ||||||| ||| ||||||||||||||||||| Sbjct: 271 cagcggcctctccatcctcatccacgccgtcatctactt 309
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 99087 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 99146 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 99147 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 99206 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| ||||||| ||||||||| || |||||||||| Sbjct: 99207 ggcctctccatcctcgtccactccatcatctactt 99241
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018F17, complete sequence Length = 104291 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 5387 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 5446 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 5447 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 5506 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| ||||||| ||||||||| || |||||||||| Sbjct: 5507 ggcctctccatcctcgtccactccatcatctactt 5541
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 17031431 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 17031490 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 17031491 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 17031550 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| ||||||| ||||||||| || |||||||||| Sbjct: 17031551 ggcctctccatcctcgtccactccatcatctactt 17031585
>dbj|AK062973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E07, full insert sequence Length = 562 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 103 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 162 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 163 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 222 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| ||||||| ||||||||| || |||||||||| Sbjct: 223 ggcctctccatcctcgtccactccatcatctactt 257
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 188 bits (95), Expect = 1e-44 Identities = 140/155 (90%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 17126132 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 17126191 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 17126192 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 17126251 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| ||||||| ||||||||| || |||||||||| Sbjct: 17126252 ggcctctccatcctcgtccactccatcatctactt 17126286
>ref|XM_475056.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 219 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 365 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 424 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 33 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 92 Query: 425 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccac 473 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| Sbjct: 93 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccac 141
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 365 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 424 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 158575 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 158634 Query: 425 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccac 473 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| Sbjct: 158635 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccac 158683 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 339 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 398 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 162130 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 162189 Query: 399 ctccagatccccgg 412 ||||| ||||||| Sbjct: 162190 atccagctccccgg 162203
>dbj|AK071540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101E05, full insert sequence Length = 683 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 365 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 424 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 152 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 211 Query: 425 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccac 473 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| Sbjct: 212 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccac 260
>dbj|AK062996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-G10, full insert sequence Length = 517 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 365 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 424 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 149 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 208 Query: 425 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccac 473 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| Sbjct: 209 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccac 257
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 97.6 bits (49), Expect = 3e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 365 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 424 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 40759 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 40818 Query: 425 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccac 473 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| Sbjct: 40819 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccac 40867 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 339 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 398 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 44314 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 44373 Query: 399 ctccagatccccgg 412 ||||| ||||||| Sbjct: 44374 atccagctccccgg 44387
>ref|XM_463643.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 228 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/101 (85%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 384 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 442 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 70 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 128 Query: 443 ccagaccagcggcatctccatactcgtccacgccgtcatct 483 ||||||| |||| |||| ||||||||||||||||||| Sbjct: 129 ggcaaccagcgccatcgccatcctcgtccacgccgtcatct 169
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/101 (85%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 384 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 442 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 40371673 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 40371731 Query: 443 ccagaccagcggcatctccatactcgtccacgccgtcatct 483 ||||||| |||| |||| ||||||||||||||||||| Sbjct: 40371732 ggcaaccagcgccatcgccatcctcgtccacgccgtcatct 40371772
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1455F06 Length = 140848 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/101 (85%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 384 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 442 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 80637 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 80695 Query: 443 ccagaccagcggcatctccatactcgtccacgccgtcatct 483 ||||||| |||| |||| ||||||||||||||||||| Sbjct: 80696 ggcaaccagcgccatcgccatcctcgtccacgccgtcatct 80736
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0592G05 Length = 146220 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/101 (85%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 384 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 442 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 22914 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 22972 Query: 443 ccagaccagcggcatctccatactcgtccacgccgtcatct 483 ||||||| |||| |||| ||||||||||||||||||| Sbjct: 22973 ggcaaccagcgccatcgccatcctcgtccacgccgtcatct 23013
>dbj|AK060288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-C11, full insert sequence Length = 524 Score = 65.9 bits (33), Expect = 1e-07 Identities = 86/101 (85%), Gaps = 2/101 (1%) Strand = Plus / Plus Query: 384 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 442 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 148 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 206 Query: 443 ccagaccagcggcatctccatactcgtccacgccgtcatct 483 ||||||| |||| |||| ||||||||||||||||||| Sbjct: 207 ggcaaccagcgccatcgccatcctcgtccacgccgtcatct 247
>gb|AY021987.1| Oryza sativa microsatellite MRG4312 containing (TC)X12, genomic sequence Length = 224 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcct 379 |||||||| |||| |||||||||||| ||||||||||| |||||||| Sbjct: 49 atggcggattgggggccggtgttcatagggctggtgctgttcatcct 3
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 18311316 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 18311375 Query: 393 ctgctg 398 |||||| Sbjct: 18311376 ctgctg 18311381 Score = 54.0 bits (27), Expect = 4e-04 Identities = 123/155 (79%) Strand = Plus / Minus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 18245747 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 18245688 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 18245687 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 18245628 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| || || | ||||||||||||||||||||||| Sbjct: 18245627 ggcgtcgccgtcctcgtccacgccgtcatctactt 18245593 Score = 50.1 bits (25), Expect = 0.007 Identities = 90/109 (82%), Gaps = 2/109 (1%) Strand = Plus / Plus Query: 372 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 430 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 18281686 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 18281744 Query: 431 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtc 479 |||||||||| | ||||||||| ||||| | ||||||||||||||| Sbjct: 18281745 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtc 18281793
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 112529 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 112588 Query: 393 ctgctg 398 |||||| Sbjct: 112589 ctgctg 112594 Score = 54.0 bits (27), Expect = 4e-04 Identities = 123/155 (79%) Strand = Plus / Minus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 46960 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 46901 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 46900 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 46841 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| || || | ||||||||||||||||||||||| Sbjct: 46840 ggcgtcgccgtcctcgtccacgccgtcatctactt 46806 Score = 50.1 bits (25), Expect = 0.007 Identities = 90/109 (82%), Gaps = 2/109 (1%) Strand = Plus / Plus Query: 372 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 430 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 82899 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 82957 Query: 431 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtc 479 |||||||||| | ||||||||| ||||| | ||||||||||||||| Sbjct: 82958 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtc 83006
>dbj|AK105187.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F09, full insert sequence Length = 492 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 34 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 93 Query: 393 ctgctg 398 |||||| Sbjct: 94 ctgctg 99
>ref|XM_472281.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 210 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 428 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 96 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 155
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 428 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 164743 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 164684
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 428 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 19072818 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 19072759
>dbj|AK063862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D12, full insert sequence Length = 504 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 428 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 143 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 202
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 428 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 6339 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 6280
>ref|XM_506811.1| PREDICTED Oryza sativa (japonica cultivar-group), P0047E05.40 mRNA Length = 537 Score = 54.0 bits (27), Expect = 4e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 111 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 170 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 171 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 230 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| || || | ||||||||||||||||||||||| Sbjct: 231 ggcgtcgccgtcctcgtccacgccgtcatctactt 265
>ref|XM_465906.1| Oryza sativa (japonica cultivar-group), mRNA Length = 521 Score = 54.0 bits (27), Expect = 4e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 90 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 149 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 150 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 209 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| || || | ||||||||||||||||||||||| Sbjct: 210 ggcgtcgccgtcctcgtccacgccgtcatctactt 244
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 54.0 bits (27), Expect = 4e-04 Identities = 123/155 (79%) Strand = Plus / Minus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 169148 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 169089 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 169088 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 169029 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| || || | ||||||||||||||||||||||| Sbjct: 169028 ggcgtcgccgtcctcgtccacgccgtcatctactt 168994
>dbj|AK121771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092F10, full insert sequence Length = 538 Score = 54.0 bits (27), Expect = 4e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 112 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 171 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 172 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 231 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| || || | ||||||||||||||||||||||| Sbjct: 232 ggcgtcgccgtcctcgtccacgccgtcatctactt 266
>dbj|AK063931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D03, full insert sequence Length = 530 Score = 54.0 bits (27), Expect = 4e-04 Identities = 123/155 (79%) Strand = Plus / Plus Query: 333 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 392 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 88 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 147 Query: 393 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 452 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 148 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 207 Query: 453 ggcatctccatactcgtccacgccgtcatctactt 487 ||| || || | ||||||||||||||||||||||| Sbjct: 208 ggcgtcgccgtcctcgtccacgccgtcatctactt 242
>ref|XM_475057.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 210 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 339 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 398 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 7 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 66 Query: 399 ctccagatccccgg 412 ||||| ||||||| Sbjct: 67 atccagctccccgg 80
>dbj|AK066339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062F19, full insert sequence Length = 641 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 339 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 398 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 189 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 248 Query: 399 ctccagatccccgg 412 ||||| ||||||| Sbjct: 249 atccagctccccgg 262
>ref|XM_465910.1| Oryza sativa (japonica cultivar-group), mRNA Length = 213 Score = 50.1 bits (25), Expect = 0.007 Identities = 90/109 (82%), Gaps = 2/109 (1%) Strand = Plus / Plus Query: 372 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 430 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 43 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 101 Query: 431 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtc 479 |||||||||| | ||||||||| ||||| | ||||||||||||||| Sbjct: 102 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtc 150
>ref|XM_477594.1| Oryza sativa (japonica cultivar-group), mRNA Length = 237 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 447 accagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| ||||||| |||||||||||| || ||||||| Sbjct: 124 accagcggcctctccatcctcgtccacgccatcctctactt 164
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 447 accagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| ||||||| |||||||||||| || ||||||| Sbjct: 11736136 accagcggcctctccatcctcgtccacgccatcctctactt 11736176
>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0680C01 Length = 145580 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 447 accagcggcatctccatactcgtccacgccgtcatctactt 487 ||||||||| ||||||| |||||||||||| || ||||||| Sbjct: 94295 accagcggcctctccatcctcgtccacgccatcctctactt 94335
>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence Length = 157092 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 239 cacagagcaggtgaaggaaccagctgc 265 ||||||||||||||||| ||||||||| Sbjct: 148017 cacagagcaggtgaaggcaccagctgc 147991
>gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, complete sequence Length = 161297 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 239 cacagagcaggtgaaggaaccagctgc 265 ||||||||||||||||| ||||||||| Sbjct: 52416 cacagagcaggtgaaggcaccagctgc 52390
>gb|AY104142.1| Zea mays PCO087598 mRNA sequence Length = 630 Score = 46.1 bits (23), Expect = 0.11 Identities = 50/59 (84%) Strand = Plus / Plus Query: 429 gagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 487 |||||||||| | | || ||||||||| | |||| ||||||||||||||| ||||||| Sbjct: 214 gagttcggcagcatgcacaccagcggcctggccatcctcgtccacgccgtcctctactt 272
>gb|AC112081.8| Rattus norvegicus 7 BAC CH230-192B8 (Children's Hospital Oakland Research Institute) complete sequence Length = 150311 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ggtcctacaatcacagagca 247 |||||||||||||||||||| Sbjct: 124448 ggtcctacaatcacagagca 124429
>gb|AC164637.3| Mus musculus BAC clone RP23-128I20 from chromosome 13, complete sequence Length = 222651 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cagagcaggtgaaggaacca 260 |||||||||||||||||||| Sbjct: 62952 cagagcaggtgaaggaacca 62971
>gb|AC016939.8| Homo sapiens X BAC RP5-1014O16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 118440 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 cacaggtcctacaatcacag 243 |||||||||||||||||||| Sbjct: 70021 cacaggtcctacaatcacag 70040
>gb|AC016940.7| Homo sapiens X PAC RP5-937E21 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 111560 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 cacaggtcctacaatcacag 243 |||||||||||||||||||| Sbjct: 71233 cacaggtcctacaatcacag 71252
>gb|AE008845.1| Salmonella typhimurium LT2, section 149 of 220 of the complete genome Length = 23018 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gcggactgggcgccggtgtt 355 |||||||||||||||||||| Sbjct: 21676 gcggactgggcgccggtgtt 21657
>gb|AC159230.2| Mus musculus BAC clone RP24-378I19 from chromosome 13, complete sequence Length = 190521 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 cagagcaggtgaaggaacca 260 |||||||||||||||||||| Sbjct: 161880 cagagcaggtgaaggaacca 161899
>emb|AL627277.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 13/20 Length = 230050 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gcggactgggcgccggtgtt 355 |||||||||||||||||||| Sbjct: 217013 gcggactgggcgccggtgtt 216994
>emb|AJ576039.1|GWE576039 Gordonia westfalica strain DSM44215T plasmid pKB1 complete genome Length = 101016 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ggtgttcatcgggctggtgc 369 |||||||||||||||||||| Sbjct: 36761 ggtgttcatcgggctggtgc 36742
>gb|AC087410.1|AC087410 Homo sapiens chromosome X clone Qc18F9 map Xq28, complete sequence Length = 40438 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 224 cacaggtcctacaatcacag 243 |||||||||||||||||||| Sbjct: 37605 cacaggtcctacaatcacag 37586
>gb|AC009478.4| Homo sapiens BAC clone RP11-255L1 from 2, complete sequence Length = 162608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 agggcaggatggtggagttc 434 |||||||||||||||||||| Sbjct: 82231 agggcaggatggtggagttc 82250
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gcggactgggcgccggtgtt 355 |||||||||||||||||||| Sbjct: 3146090 gcggactgggcgccggtgtt 3146071
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 gcggactgggcgccggtgtt 355 |||||||||||||||||||| Sbjct: 3178508 gcggactgggcgccggtgtt 3178489
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tgttcatcgggctggtgctc 371 |||||||||||||||||||| Sbjct: 2866742 tgttcatcgggctggtgctc 2866723
>gb|U71148.1|HSU71148 Human Xq28 cosmids U225B5 and U236A12, complete sequence Length = 76133 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 cacaggtcctacaatcacag 243 |||||||||||||||||||| Sbjct: 73832 cacaggtcctacaatcacag 73851
>gb|U69568.1|HSU69568 Human Xq28 cosmid U168D11, complete sequence Length = 43927 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 cacaggtcctacaatcacag 243 |||||||||||||||||||| Sbjct: 2147 cacaggtcctacaatcacag 2166
>gb|U09309.1|STU09309 Salmonella typhimurium LT2 ygiJ and ygiK genes, complete cds, and parF gene, partial cds Length = 3184 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 gcggactgggcgccggtgtt 355 |||||||||||||||||||| Sbjct: 484 gcggactgggcgccggtgtt 503 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,311,286 Number of Sequences: 3902068 Number of extensions: 3311286 Number of successful extensions: 66256 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65894 Number of HSP's gapped (non-prelim): 349 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
