ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25f16 |
|---|---|
| Clone Library Name | barley_pub |
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 81.3 bits (199), Expect = 2e-15 Identities = 49/149 (32%), Positives = 70/149 (46%) Frame = +2 Query: 26 AALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXXXXXXXXXXXGALPTKVVCLT 205 A LNG+++GDK L V+ A ++ N T+++CL Sbjct: 349 AGLNGMQLGDKQLVVQLACANQ-----QRHNTNLPNSASAIAGIDLSQGAGRATEILCLM 403 Query: 206 QVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVD 385 +VT DELK R E KYG + + IPRP+ PV GVGKVF+E+A Sbjct: 404 NMVTEDELKADDEYEEILEDVRDECSKYGIVRSLEIPRPY-EDHPVPGVGKVFVEFASTS 462 Query: 386 GSTKAKTAMHGRKFGGNPVVAVFYPENKF 472 +A+ A+ GRKF VV +Y +K+ Sbjct: 463 DCQRAQAALTGRKFANRTVVTSYYDVDKY 491
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 80.9 bits (198), Expect = 3e-15 Identities = 54/151 (35%), Positives = 75/151 (49%) Frame = +2 Query: 20 SCAALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXXXXXXXXXXXGALPTKVVC 199 S A LNG+++GDK L V+RA+ G A+ N G PT+V+C Sbjct: 264 SIAGLNGMQLGDKKLIVQRASVG-AKNAQNAANTTQSVMLQVPGLSNVVTSGP-PTEVLC 321 Query: 200 LTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYAD 379 L +VT DEL+ + E KYG + V IPRP + G V G GKVF+E+ Sbjct: 322 LLNMVTPDELRDEEEYEDILEDIKEECTKYGVVRSVEIPRP-IEGVEVPGCGKVFVEFNS 380 Query: 380 VDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 472 V KA+ A+ GRKF VV ++ +K+ Sbjct: 381 VLDCQKAQQALTGRKFSDRVVVTSYFDPDKY 411
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 79.3 bits (194), Expect = 8e-15 Identities = 48/149 (32%), Positives = 69/149 (46%) Frame = +2 Query: 26 AALNGIKMGDKTLTVRRANQGSAQPRPEQENIXXXXXXXXXXXXXXXXXGALPTKVVCLT 205 A LNG+++GDK L V+ A + N T+++CL Sbjct: 340 AGLNGMQLGDKQLVVQLACANQTRHNTHLPN-----SASAIAGIDLSQGAGRATEILCLM 394 Query: 206 QVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVD 385 +VT DEL+ R E KYG + + IPRP+ PV GVGKVF+E+A Sbjct: 395 NMVTEDELRSDEDYEEILEDVREECSKYGIVRSLEIPRPY-DDHPVPGVGKVFVEFATTS 453 Query: 386 GSTKAKTAMHGRKFGGNPVVAVFYPENKF 472 +A+ A+ GRKF VV +Y +K+ Sbjct: 454 DCQRAQAALTGRKFANRTVVTSYYDVDKY 482
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 72.4 bits (176), Expect = 1e-12 Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 4/147 (2%) Frame = +2 Query: 26 AALNGIKMGDKTLTVRRANQGSAQPR----PEQENIXXXXXXXXXXXXXXXXXGALPTKV 193 A LNG+++GDK L V+RA+ G+ P N G PT+V Sbjct: 318 AGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVPGLMSSQVQMGGHPTEV 377 Query: 194 VCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEY 373 +CL +V +EL R E KYG + + IPRP + G V G GK+F+E+ Sbjct: 378 LCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEF 436 Query: 374 ADVDGSTKAKTAMHGRKFGGNPVVAVF 454 V KA + GRKF VV + Sbjct: 437 TSVFDCQKAMQGLTGRKFANRVVVTKY 463
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 72.4 bits (176), Expect = 1e-12 Identities = 48/147 (32%), Positives = 66/147 (44%), Gaps = 4/147 (2%) Frame = +2 Query: 26 AALNGIKMGDKTLTVRRANQGSAQPR----PEQENIXXXXXXXXXXXXXXXXXGALPTKV 193 A LNG+++GDK L V+RA+ G+ P N G PT+V Sbjct: 318 AGLNGMQLGDKKLLVQRASVGAKNATLVSPPSTINQTPVTLQVPGLMSSQVQMGGHPTEV 377 Query: 194 VCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEY 373 +CL +V +EL R E KYG + + IPRP + G V G GK+F+E+ Sbjct: 378 LCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRP-VDGVEVPGCGKIFVEF 436 Query: 374 ADVDGSTKAKTAMHGRKFGGNPVVAVF 454 V KA + GRKF VV + Sbjct: 437 TSVFDCQKAMQGLTGRKFANRVVVTKY 463
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/97 (29%), Positives = 47/97 (48%) Frame = +2 Query: 176 ALPTKVVCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVG 355 ++PT+V+ L ++T DE+ + + YG L+ + IPR + G G Sbjct: 414 SIPTRVLQLHNLITGDEIMDVQEYEDIYESVKTQFSNYGPLIDIKIPRSIGTRNSGLGTG 473 Query: 356 KVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPEN 466 KVF+ Y+D+ + A M G KF +V FY E+ Sbjct: 474 KVFVRYSDIRSAEVAMEEMKGCKFNDRTIVIAFYGED 510
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 53.9 bits (128), Expect = 4e-07 Identities = 33/94 (35%), Positives = 48/94 (51%) Frame = +2 Query: 179 LPTKVVCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGK 358 LPT V+ L V+ D L+ + E KYG +V +++P+ + G G+ Sbjct: 318 LPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQ 371 Query: 359 VFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 460 VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 372 VFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 53.9 bits (128), Expect = 4e-07 Identities = 33/94 (35%), Positives = 48/94 (51%) Frame = +2 Query: 179 LPTKVVCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGK 358 LPT V+ L V+ D L+ + E KYG +V +++P+ + G G+ Sbjct: 318 LPTPVLRLLNVLDDDYLENEDEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQ 371 Query: 359 VFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 460 VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 372 VFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 53.9 bits (128), Expect = 4e-07 Identities = 33/94 (35%), Positives = 48/94 (51%) Frame = +2 Query: 179 LPTKVVCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGK 358 LPT V+ L V+ D L+ + E KYG +V +++P+ + G G+ Sbjct: 318 LPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQ 371 Query: 359 VFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYP 460 VF+EYA+ S A+ + GR F G VVA FYP Sbjct: 372 VFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYP 405
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 50.1 bits (118), Expect = 5e-06 Identities = 35/97 (36%), Positives = 48/97 (49%) Frame = +2 Query: 182 PTKVVCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKV 361 PTKVV L +V A E+ + E KYG + K VI + G P ++ Sbjct: 303 PTKVVLLRNMVGAGEVDEDLEVET-----KEECEKYGKVGKCVIFE--IPGAPDDEAVRI 355 Query: 362 FLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 472 FLE+ V+ + KA ++GR FGG V A FY +KF Sbjct: 356 FLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 392
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 50.1 bits (118), Expect = 5e-06 Identities = 35/97 (36%), Positives = 48/97 (49%) Frame = +2 Query: 182 PTKVVCLTQVVTADELKXXXXXXXXXXXXRLEAGKYGNLVKVVIPRPHLSGEPVSGVGKV 361 PTKVV L +V A E+ + E KYG + K VI + G P ++ Sbjct: 307 PTKVVLLRNMVGAGEVDEDLEVET-----KEECEKYGKVGKCVIFE--IPGAPDDEAVRI 359 Query: 362 FLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPENKF 472 FLE+ V+ + KA ++GR FGG V A FY +KF Sbjct: 360 FLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKF 396
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 48.9 bits (115), Expect = 1e-05 Identities = 25/66 (37%), Positives = 37/66 (56%) Frame = +2 Query: 275 EAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 454 E GKYG + +V+I PV ++F++++ + +TKA + GR FGG V A F Sbjct: 307 ECGKYGTVTRVLIFEITEPNFPVHEAVRIFVQFSRPEETTKALVDLDGRYFGGRTVRATF 366 Query: 455 YPENKF 472 Y E KF Sbjct: 367 YDEEKF 372
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 37.4 bits (85), Expect = 0.034 Identities = 19/63 (30%), Positives = 32/63 (50%) Frame = +2 Query: 284 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVFYPE 463 KYG +V + + L G++F+++ + D + KA T +H R FGG + A PE Sbjct: 540 KYGKVVHIAVVPNEL--------GQIFVKFENADFAEKAITGLHQRWFGGRTIKASILPE 591 Query: 464 NKF 472 + Sbjct: 592 TDY 594
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 34.7 bits (78), Expect = 0.22 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Frame = +2 Query: 275 EAGKYGNLVKVVI----PRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPV 442 E K+G + +V+I + + + K+F+E++ + + K A+ GR FGG V Sbjct: 561 ECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAGAEAMRGKEALDGRFFGGRRV 620 Query: 443 VAVFYPENKF 472 VA Y + F Sbjct: 621 VAELYDQGIF 630
>RS2_LEIAM (O43992) 40S ribosomal protein S2| Length = 265 Score = 33.9 bits (76), Expect = 0.38 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = +2 Query: 281 GKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYA---DVDGSTKAKTAMHGRKFGGNPVVAV 451 GK G++ ++P P +G + V K LE+A DV S++ KT H GN ++A Sbjct: 172 GKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTH-----GNLIMAT 226 Query: 452 FYPENK 469 FY K Sbjct: 227 FYALRK 232
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = +2 Query: 275 EAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 454 E K+G ++ + + + S G V+++ + + A A+HGR F G + A + Sbjct: 453 ECNKHGGVIHIYVDKN-------SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 505 Query: 455 YP 460 P Sbjct: 506 VP 507
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 32.0 bits (71), Expect = 1.4 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = +2 Query: 275 EAGKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGGNPVVAVF 454 E K+G ++ + + + S G V+++ + + A A+HGR F G + A + Sbjct: 453 ECNKHGGVIHIYVDKN-------SAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAY 505 Query: 455 YP 460 P Sbjct: 506 VP 507
>SRA31_CAEEL (Q18881) Serpentine receptor class alpha-31 (Protein sra-31)| Length = 338 Score = 31.6 bits (70), Expect = 1.9 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = -3 Query: 556 CKSNELHKTLLALEKRDNLCCRIIVLFSKLVLGV-EDRNNWVSTKFPSMHRRLCFGGAIN 380 C S E+ TL + N C ++++ S + L V R W + FP+ R L F IN Sbjct: 7 CTSEEIRLTLTSSFMMGNHCFILLIIISSVFLTVFAIRKLWKNNIFPNCTRTLLFSAIIN 66
>RS2_DICDI (P27685) 40S ribosomal protein S2 (S4) (LLRep3 protein)| Length = 265 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%) Frame = +2 Query: 281 GKYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDG---STKAKTAMHGRKFGGNPVVAV 451 GK G++ ++P P +G + V K L+YA VD S++ KT + GN V+A Sbjct: 173 GKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKT-----RTMGNFVMAT 227 Query: 452 FYPENK 469 F+ K Sbjct: 228 FFAITK 233
>ZN418_HUMAN (Q8TF45) Zinc finger protein 418| Length = 676 Score = 30.0 bits (66), Expect = 5.4 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -2 Query: 458 GRRPQQLGFHQISFHASPSLLWWSHQHLHTLRTPFQ 351 G RP + SFH S SLL HQ +HT R+P++ Sbjct: 643 GERPYECSECGKSFHRSSSLL--RHQRVHTERSPYK 676 Score = 30.0 bits (66), Expect = 5.4 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = -2 Query: 458 GRRPQQLGFHQISFHASPSLLWWSHQHLHTLRTPFQLQK 342 G RP + G SFH S SLL HQ HT P++ ++ Sbjct: 534 GERPYECGECGKSFHQSSSLL--RHQKTHTAERPYECRE 570
>ATG9A_HUMAN (Q7Z3C6) Autophagy-related protein 9A (APG9-like 1)| Length = 839 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/75 (28%), Positives = 28/75 (37%) Frame = +1 Query: 106 RAGKYPFAGTAAGAVTETCVSSWCTSYKGCMPDPGSYC**IKR**RI*GHYGRHEVGSWE 285 R+ YP A GA T + G + DPG+ R+ H+ R +G W Sbjct: 758 RSASYPCAAPRPGAPETTALHGGFQRRYGGITDPGTVP-------RVPSHFSRLPLGGWA 810 Query: 286 IW*LGESCHPAPSSE 330 S HP P E Sbjct: 811 EDGQSASRHPEPVPE 825
>DRBP1_MOUSE (Q8BHN5) Developmentally-regulated RNA-binding protein 1 (RB-1)| Length = 476 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/50 (30%), Positives = 27/50 (54%) Frame = +2 Query: 284 KYGNLVKVVIPRPHLSGEPVSGVGKVFLEYADVDGSTKAKTAMHGRKFGG 433 ++GNL++V + VSG +++YAD + +A T +HG+ G Sbjct: 414 RFGNLIEVYL---------VSGKNVGYVKYADRKSANEAITTLHGKILNG 454 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,980,559 Number of Sequences: 219361 Number of extensions: 1775867 Number of successful extensions: 4266 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4083 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4248 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
