ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25f16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ019635.1| Triticum aestivum U2AF large subunit (U2AF65) mRNA, complete cds Length = 1786 Score = 1027 bits (518), Expect = 0.0 Identities = 569/586 (97%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1163 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 1222 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagc 140 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1223 accagggctcagcccaacctagaccagagcaggaaaatatcctgttgcaggcacagcagc 1282 Query: 141 aggtgcagttacagaaacttgtgtatcaagttggtgcacttcctacaaaggttgtatgcc 200 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct: 1283 aggtgcagttacagaaacttgtgtatcaagttggagcgctccctacaaaggttgtatgcc 1342 Query: 201 tgacccaggtagttactgctgatgaattaaaagatgatgaagaatatgaggacattatgg 260 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 1343 tgacccaggtagttactgctgatgaattaaaggatgatgaagaatatgaggacattatgg 1402 Query: 261 aagacatgaggttggaagctgggaaatatggtaacttggtgaaagttgtcatcccgcgcc 320 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1403 aggacatgaggttggaagctgggaaatatggtaacttggtgaaagttgtcatcccgcgcc 1462 Query: 321 ctcatctgagtggagagccagtttctggagttggaaaggtgttcttagagtatgcagatg 380 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1463 ctcatccgagtggagagccagtttctggagttggaaaggtgttcttagagtatgcagatg 1522 Query: 381 ttgatggctccaccaaagcaaagacggcgatgcatggaaggaaatttggtggaaacccag 440 ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1523 ttgatggttccaccaaagcaaagacggcgatgcatggaaggaaattcggtggaaacccag 1582 Query: 441 ttgttgcggtcttctaccccgagaacaagtttgctgaagaggactatgatgcggcagcat 500 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct: 1583 ttgttgcggtcttctaccccgagaacaagtttgctgatgaggactatgacgcggcagcat 1642 Query: 501 aaattatctctcttttccaatgccaatagtgttttgtgtagttcgttcgatttacagcaa 560 |||||||||||||||||||||| |||||||| ||| ||||||| |||||||||||||||| Sbjct: 1643 aaattatctctcttttccaatgacaatagtgctttctgtagtttgttcgatttacagcaa 1702 Query: 561 cgtttccccttctagttgagctttcttgtagccctggatttatgca 606 ||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 1703 cgttttcccttctagtcgagctttcttgtagccctggatttatgca 1748
>dbj|AK066311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013068A09, full insert sequence Length = 2841 Score = 412 bits (208), Expect = e-112 Identities = 391/452 (86%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||| |||||||| ||||| |||||||||||||||||||| || || || ||| | |||| Sbjct: 2255 cctgtgctgctctgaatggcatcaagatgggagacaaaaccctaactgttagaagggcaa 2314 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagc 140 ||||||| | || || ||||||||||| ||||||| |||||| |||||||||||||| | Sbjct: 2315 accagggagcggctcagcctagaccagaacaggaaagtatcctgttgcaggcacagcaac 2374 Query: 141 aggtgcagttacagaaacttgtgtatcaagttggtgcacttcctacaaaggttgtatgcc 200 | ||||| |||||||||||||| ||||||||||| ||||| |||||||||||||| |||| Sbjct: 2375 aagtgcaattacagaaacttgtatatcaagttggagcactccctacaaaggttgtgtgcc 2434 Query: 201 tgacccaggtagttactgctgatgaattaaaagatgatgaagaatatgaggacattatgg 260 |||||||||| ||| | |||||||||||||||||||| || || ||||| |||||||||| Sbjct: 2435 tgacccaggtggtttcggctgatgaattaaaagatgacgaggagtatgaagacattatgg 2494 Query: 261 aagacatgaggttggaagctgggaaatatggtaacttggtgaaagttgtcatcccgcgcc 320 | |||||||| |||||||| || ||||||||||| || | || ||||||||||| |||| Sbjct: 2495 aggacatgagattggaagcaggcaaatatggtaatctgattaaggttgtcatccctcgcc 2554 Query: 321 ctcatctgagtggagagccagtttctggagttggaaaggtgttcttagagtatgcagatg 380 || ||| |||||| |||||| |||||||||||||||| ||||| ||||||||||||| Sbjct: 2555 ctgatcctagtggattaccagttgctggagttggaaaggttttcttggagtatgcagatg 2614 Query: 381 ttgatggctccaccaaagcaaagacggcgatgcatggaaggaaatttggtggaaacccag 440 | || ||| ||||||||||||||||||| |||||||||||||| || |||||||| |||| Sbjct: 2615 tggacggcgccaccaaagcaaagacggcaatgcatggaaggaagttcggtggaaatccag 2674 Query: 441 ttgttgcggtcttctaccccgagaacaagttt 472 |||| || || |||||||| |||||||||||| Sbjct: 2675 ttgtcgcagtgttctaccctgagaacaagttt 2706
>gb|AY111048.1| Zea mays CL3975_1 mRNA sequence Length = 974 Score = 385 bits (194), Expect = e-103 Identities = 384/449 (85%) Strand = Plus / Plus Query: 26 gctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaaccag 85 ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct: 211 gctgcactaaatggtatcaagatgggtgacaaaacccttactgtcagacgagcaaaccan 270 Query: 86 ggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagcaggtg 145 || | || || |||||||||||||||| |||||| ||||||||||| || |||||| Sbjct: 271 nnnncatctcagcccagaccagagcaggaaagtatcctattgcaggcacaacaacaggtg 330 Query: 146 cagttacagaaacttgtgtatcaagttggtgcacttcctacaaaggttgtatgcctgacc 205 ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || Sbjct: 331 cagttgcagaaacttgtgtatcaagttggagcgcttcctacaaaggttgtatgcctcacg 390 Query: 206 caggtagttactgctgatgaattaaaagatgatgaagaatatgaggacattatggaagac 265 ||||| || ||||| |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct: 391 caggtggtaactgcagatgaattgaaagatgatgaagagtatgaggacattatggaagac 450 Query: 266 atgaggttggaagctgggaaatatggtaacttggtgaaagttgtcatcccgcgccctcat 325 |||||| | ||||| || ||||||||||| |||||||||||| ||||||| |||||| | Sbjct: 451 atgaggctagaagcaggcaaatatggtaatttggtgaaagttatcatcccacgccctgac 510 Query: 326 ctgagtggagagccagtttctggagttggaaaggtgttcttagagtatgcagatgttgat 385 | || || |||||||| |||||||| ||||||||| | || ||||||||| | ||| Sbjct: 511 cccagcgggcagccagttgtaggagttgggaaggtgttcctggaatatgcagatatcgat 570 Query: 386 ggctccaccaaagcaaagacggcgatgcatggaaggaaatttggtggaaacccagttgtt 445 || | ||||||||||||| ||| |||||||||||||||||||||| |||||||| || Sbjct: 571 ggtgctgccaaagcaaagacagcgctgcatggaaggaaatttggtgggaacccagtggtc 630 Query: 446 gcggtcttctaccccgagaacaagtttgc 474 || |||| ||| | ||| |||||||||| Sbjct: 631 gctgtctgctatgcggaggacaagtttgc 659
>gb|AC135190.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0064H09, complete sequence Length = 146742 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Plus Query: 151 acagaaacttgtgtatcaagttggtgcacttcctacaaaggttgtatgcctgacccaggt 210 |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct: 23256 acagaaacttgtatatcaagttggagcactccctacaaaggttgtgtgcctgacccaggt 23315 Query: 211 agttactgctgatgaattaaaagatgatgaagaatatgaggacattatggaagacatgag 270 ||| | |||||||||||||||||||| || || ||||| ||||||||||| |||||||| Sbjct: 23316 ggtttcggctgatgaattaaaagatgacgaggagtatgaagacattatggaggacatgag 23375 Query: 271 gttggaagctgggaaatatggtaa 294 |||||||| || ||||||||||| Sbjct: 23376 attggaagcaggcaaatatggtaa 23399 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 357 aggtgttcttagagtatgcagatgttgatggctccaccaaagcaaagacggcgatgcatg 416 |||| ||||| |||||||||||||| || ||| ||||||||||||||||||| ||||||| Sbjct: 23754 aggttttcttggagtatgcagatgtggacggcgccaccaaagcaaagacggcaatgcatg 23813 Query: 417 gaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagttt 472 ||||||| || |||||||| ||||||||||| || |||||||| |||||||||||| Sbjct: 23814 gaaggaagttcggtggaaatccagttgttgcagtgttctaccctgagaacaagttt 23869 Score = 107 bits (54), Expect = 4e-20 Identities = 114/134 (85%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||| |||||||| ||||| |||||||||||||||||||| || || || ||| | |||| Sbjct: 23015 cctgtgctgctctgaatggcatcaagatgggagacaaaaccctaactgttagaagggcaa 23074 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagc 140 ||||||| | || || ||||||||||| ||||||| |||||| |||||||||||||| | Sbjct: 23075 accagggagcggctcagcctagaccagaacaggaaagtatcctgttgcaggcacagcaac 23134 Query: 141 aggtgcagttacag 154 | ||||| |||||| Sbjct: 23135 aagtgcaattacag 23148 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 305 gttgtcatcccgcgccctcatctgagtggagagccagtttctggagttggaaaggt 360 ||||||||||| |||||| ||| |||||| |||||| |||||||||||||||| Sbjct: 23626 gttgtcatccctcgccctgatcctagtggattaccagttgctggagttggaaaggt 23681
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence Length = 157539 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Plus Query: 151 acagaaacttgtgtatcaagttggtgcacttcctacaaaggttgtatgcctgacccaggt 210 |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct: 130874 acagaaacttgtatatcaagttggagcactccctacaaaggttgtgtgcctgacccaggt 130933 Query: 211 agttactgctgatgaattaaaagatgatgaagaatatgaggacattatggaagacatgag 270 ||| | |||||||||||||||||||| || || ||||| ||||||||||| |||||||| Sbjct: 130934 ggtttcggctgatgaattaaaagatgacgaggagtatgaagacattatggaggacatgag 130993 Query: 271 gttggaagctgggaaatatggtaa 294 |||||||| || ||||||||||| Sbjct: 130994 attggaagcaggcaaatatggtaa 131017 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 357 aggtgttcttagagtatgcagatgttgatggctccaccaaagcaaagacggcgatgcatg 416 |||| ||||| |||||||||||||| || ||| ||||||||||||||||||| ||||||| Sbjct: 131372 aggttttcttggagtatgcagatgtggacggcgccaccaaagcaaagacggcaatgcatg 131431 Query: 417 gaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagttt 472 ||||||| || |||||||| ||||||||||| || |||||||| |||||||||||| Sbjct: 131432 gaaggaagttcggtggaaatccagttgttgcagtgttctaccctgagaacaagttt 131487 Score = 107 bits (54), Expect = 4e-20 Identities = 114/134 (85%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||| |||||||| ||||| |||||||||||||||||||| || || || ||| | |||| Sbjct: 130633 cctgtgctgctctgaatggcatcaagatgggagacaaaaccctaactgttagaagggcaa 130692 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagc 140 ||||||| | || || ||||||||||| ||||||| |||||| |||||||||||||| | Sbjct: 130693 accagggagcggctcagcctagaccagaacaggaaagtatcctgttgcaggcacagcaac 130752 Query: 141 aggtgcagttacag 154 | ||||| |||||| Sbjct: 130753 aagtgcaattacag 130766 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 305 gttgtcatcccgcgccctcatctgagtggagagccagtttctggagttggaaaggt 360 ||||||||||| |||||| ||| |||||| |||||| |||||||||||||||| Sbjct: 131244 gttgtcatccctcgccctgatcctagtggattaccagttgctggagttggaaaggt 131299
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Plus Query: 151 acagaaacttgtgtatcaagttggtgcacttcctacaaaggttgtatgcctgacccaggt 210 |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct: 26720311 acagaaacttgtatatcaagttggagcactccctacaaaggttgtgtgcctgacccaggt 26720370 Query: 211 agttactgctgatgaattaaaagatgatgaagaatatgaggacattatggaagacatgag 270 ||| | |||||||||||||||||||| || || ||||| ||||||||||| |||||||| Sbjct: 26720371 ggtttcggctgatgaattaaaagatgacgaggagtatgaagacattatggaggacatgag 26720430 Query: 271 gttggaagctgggaaatatggtaa 294 |||||||| || ||||||||||| Sbjct: 26720431 attggaagcaggcaaatatggtaa 26720454 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 357 aggtgttcttagagtatgcagatgttgatggctccaccaaagcaaagacggcgatgcatg 416 |||| ||||| |||||||||||||| || ||| ||||||||||||||||||| ||||||| Sbjct: 26720809 aggttttcttggagtatgcagatgtggacggcgccaccaaagcaaagacggcaatgcatg 26720868 Query: 417 gaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagttt 472 ||||||| || |||||||| ||||||||||| || |||||||| |||||||||||| Sbjct: 26720869 gaaggaagttcggtggaaatccagttgttgcagtgttctaccctgagaacaagttt 26720924 Score = 107 bits (54), Expect = 4e-20 Identities = 114/134 (85%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||| |||||||| ||||| |||||||||||||||||||| || || || ||| | |||| Sbjct: 26720070 cctgtgctgctctgaatggcatcaagatgggagacaaaaccctaactgttagaagggcaa 26720129 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagc 140 ||||||| | || || ||||||||||| ||||||| |||||| |||||||||||||| | Sbjct: 26720130 accagggagcggctcagcctagaccagaacaggaaagtatcctgttgcaggcacagcaac 26720189 Query: 141 aggtgcagttacag 154 | ||||| |||||| Sbjct: 26720190 aagtgcaattacag 26720203 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaa 57 |||| |||||||| ||||||||||||||||||||||| Sbjct: 24294212 cctgtgctgctcttaatggtatcaagatgggagacaa 24294176 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 176 gcacttcctacaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagat 235 ||||| ||||||||||| |||||||||||||| || ||| | | |||||| | | ||| Sbjct: 24293959 gcactgcctacaaaggtggtatgcctgacccaagtggtttcaccagatgaactgagggat 24293900 Query: 236 gatgaagaatatgaggacattatggaagacatgagg 271 ||||| || ||||||||||| || ||||||||||| Sbjct: 24293899 gatgaggagtatgaggacatcgtgcaagacatgagg 24293864 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 305 gttgtcatcccgcgccctcatctgagtggagagccagtttctggagttggaaaggt 360 ||||||||||| |||||| ||| |||||| |||||| |||||||||||||||| Sbjct: 26720681 gttgtcatccctcgccctgatcctagtggattaccagttgctggagttggaaaggt 26720736 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 290 ggtaacttggtgaaagttgtcatcccgcg 318 |||||| ||||||||||||| |||||||| Sbjct: 24293522 ggtaacctggtgaaagttgtgatcccgcg 24293494
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 167 bits (84), Expect = 5e-38 Identities = 129/144 (89%) Strand = Plus / Plus Query: 151 acagaaacttgtgtatcaagttggtgcacttcctacaaaggttgtatgcctgacccaggt 210 |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| Sbjct: 27045861 acagaaacttgtatatcaagttggagcactccctacaaaggttgtgtgcctgacccaggt 27045920 Query: 211 agttactgctgatgaattaaaagatgatgaagaatatgaggacattatggaagacatgag 270 ||| | |||||||||||||||||||| || || ||||| ||||||||||| |||||||| Sbjct: 27045921 ggtttcggctgatgaattaaaagatgacgaggagtatgaagacattatggaggacatgag 27045980 Query: 271 gttggaagctgggaaatatggtaa 294 |||||||| || ||||||||||| Sbjct: 27045981 attggaagcaggcaaatatggtaa 27046004 Score = 135 bits (68), Expect = 2e-28 Identities = 104/116 (89%) Strand = Plus / Plus Query: 357 aggtgttcttagagtatgcagatgttgatggctccaccaaagcaaagacggcgatgcatg 416 |||| ||||| |||||||||||||| || ||| ||||||||||||||||||| ||||||| Sbjct: 27046359 aggttttcttggagtatgcagatgtggacggcgccaccaaagcaaagacggcaatgcatg 27046418 Query: 417 gaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagttt 472 ||||||| || |||||||| ||||||||||| || |||||||| |||||||||||| Sbjct: 27046419 gaaggaagttcggtggaaatccagttgttgcagtgttctaccctgagaacaagttt 27046474 Score = 107 bits (54), Expect = 4e-20 Identities = 114/134 (85%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||| |||||||| ||||| |||||||||||||||||||| || || || ||| | |||| Sbjct: 27045620 cctgtgctgctctgaatggcatcaagatgggagacaaaaccctaactgttagaagggcaa 27045679 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagc 140 ||||||| | || || ||||||||||| ||||||| |||||| |||||||||||||| | Sbjct: 27045680 accagggagcggctcagcctagaccagaacaggaaagtatcctgttgcaggcacagcaac 27045739 Query: 141 aggtgcagttacag 154 | ||||| |||||| Sbjct: 27045740 aagtgcaattacag 27045753 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaa 57 |||| |||||||| ||||||||||||||||||||||| Sbjct: 24605881 cctgtgctgctcttaatggtatcaagatgggagacaa 24605845 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 176 gcacttcctacaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagat 235 ||||| ||||||||||| |||||||||||||| || ||| | | |||||| | | ||| Sbjct: 24605628 gcactgcctacaaaggtggtatgcctgacccaagtggtttcaccagatgaactgagggat 24605569 Query: 236 gatgaagaatatgaggacattatggaagacatgagg 271 ||||| || ||||||||||| || ||||||||||| Sbjct: 24605568 gatgaggagtatgaggacatcgtgcaagacatgagg 24605533 Score = 48.1 bits (24), Expect = 0.034 Identities = 48/56 (85%) Strand = Plus / Plus Query: 305 gttgtcatcccgcgccctcatctgagtggagagccagtttctggagttggaaaggt 360 ||||||||||| |||||| ||| |||||| |||||| |||||||||||||||| Sbjct: 27046231 gttgtcatccctcgccctgatcctagtggattaccagttgctggagttggaaaggt 27046286 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 290 ggtaacttggtgaaagttgtcatcccgcg 318 |||||| ||||||||||||| |||||||| Sbjct: 24605191 ggtaacctggtgaaagttgtgatcccgcg 24605163
>gb|AY103558.1| Zea mays PCO134114 mRNA sequence Length = 1707 Score = 101 bits (51), Expect = 3e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 338 ccagtttctggagttggaaaggtgttcttagagtatgcagatgttgatggctccaccaaa 397 |||||| |||| |||||||||||||| || || ||||||||||| || ||||| |||||| Sbjct: 1210 ccagttgctggtgttggaaaggtgtttttggaatatgcagatgtcgagggctcgaccaaa 1269 Query: 398 gcaaagacggcgatgcatggaaggaaatttggtggaaacccagttgttgcggtcttctac 457 |||||||||| ||||||||| |||||||||| || |||| || || || || ||||| Sbjct: 1270 gcaaagacggggatgcatgggcggaaatttggcgggaaccaggtggtggccgtgttctat 1329 Query: 458 cccgagaacaagtttgctg 476 |||||| ||||||| |||| Sbjct: 1330 cccgaggacaagttcgctg 1348 Score = 71.9 bits (36), Expect = 2e-09 Identities = 200/254 (78%), Gaps = 3/254 (1%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||| ||||| || ||||| ||||||||||| ||||| |||||||| || || | |||| Sbjct: 732 cctgtgctgcccttaatggcatcaagatgggggacaagactcttactgttaggagggcaa 791 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagcagc 140 |||| || | | || ||||| |||||||| || | ||||| ||||||||||||||| Sbjct: 792 accaaggagcttctcagcctaggccagagcaagagagcatcctgctgcaggcacagcagc 851 Query: 141 aggtgcagttacagaaacttgtgtatcaagt---tggtgcacttcctacaaaggttgtat 197 ||||||| | |||||||| || || ||||| ||||| || || ||||| ||||| | Sbjct: 852 aggtgcaaatgcagaaactcgtataccaagtcggaggtgccctgccgacaaaagttgtct 911 Query: 198 gcctgacccaggtagttactgctgatgaattaaaagatgatgaagaatatgaggacatta 257 ||||||| |||||||| || || |||||| | | ||| ||||| ||||| | |||||| Sbjct: 912 gcctgacacaggtagtgacagcagatgaactgagagacgatgaggaatacaatgacattg 971 Query: 258 tggaagacatgagg 271 |||| ||||||||| Sbjct: 972 tggaggacatgagg 985
>ref|NM_119833.2| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.1 mRNA, complete cds Length = 1958 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1361 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1420 Query: 83 caggg 87 ||||| Sbjct: 1421 caggg 1425
>ref|NM_202966.1| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.3 mRNA, complete cds Length = 2131 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1361 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1420 Query: 83 caggg 87 ||||| Sbjct: 1421 caggg 1425
>ref|NM_179178.1| Arabidopsis thaliana ATU2AF65A; RNA binding / nucleic acid binding AT4G36690 (ATU2AF65A) transcript variant AT4G36690.2 mRNA, complete cds Length = 2251 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1361 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1420 Query: 83 caggg 87 ||||| Sbjct: 1421 caggg 1425
>gb|BT000965.1| Arabidopsis thaliana clone C105231 putative splicing factor (At4g36690) mRNA, complete cds Length = 1753 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1249 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1308 Query: 83 caggg 87 ||||| Sbjct: 1309 caggg 1313
>gb|AY143980.1| Arabidopsis thaliana At4g35590/C7A10_670 mRNA, complete cds Length = 1722 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1249 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1308 Query: 83 caggg 87 ||||| Sbjct: 1309 caggg 1313
>emb|Z99708.1|ATAP22 Arabidopsis thaliana DNA chromosome 4, ESSA I AP2 contig fragment No. 2 Length = 198354 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 74321 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 74380 Query: 83 caggg 87 ||||| Sbjct: 74381 caggg 74385
>gb|AY080711.1| Arabidopsis thaliana putative splicing factor (At4g36690) mRNA, complete cds Length = 2377 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1361 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1420 Query: 83 caggg 87 ||||| Sbjct: 1421 caggg 1425
>emb|AL161589.2|ATCHRIV85 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 85 Length = 198750 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Minus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 176407 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 176348 Query: 83 caggg 87 ||||| Sbjct: 176347 caggg 176343
>gb|AF462805.1|AF462805 Arabidopsis thaliana At4g35590/C7A10_670 mRNA, complete cds Length = 1959 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1362 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1421 Query: 83 caggg 87 ||||| Sbjct: 1422 caggg 1426
>emb|BX827587.1|CNS0A3Q8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS79ZE11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1740 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 23 tgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaac 82 |||||||| ||||||||||||||||||||||| || |||||||| || ||||| || ||| Sbjct: 1010 tgcgctgccctaaatggtatcaagatgggagataagactcttacagtgagacgtgccaac 1069 Query: 83 caggg 87 ||||| Sbjct: 1070 caggg 1074
>gb|AY112521.1| Zea mays CL1839_9 mRNA sequence Length = 647 Score = 71.9 bits (36), Expect = 2e-09 Identities = 87/104 (83%) Strand = Plus / Minus Query: 371 tatgcagatgttgatggctccaccaaagcaaagacggcgatgcatggaaggaaatttggt 430 ||||||||||| || ||||| |||||||||||||| | ||||||||| ||||||| || Sbjct: 494 tatgcagatgtggagggctcaaccaaagcaaagacagggatgcatgggcggaaattcggc 435 Query: 431 ggaaacccagttgttgcggtcttctaccccgagaacaagtttgc 474 || |||| || || ||||| |||||||| ||| |||||||||| Sbjct: 434 gggaaccaggtggtggcggtgttctaccctgaggacaagtttgc 391
>dbj|AK073768.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H24, full insert sequence Length = 2016 Score = 61.9 bits (31), Expect = 2e-06 Identities = 115/143 (80%) Strand = Plus / Plus Query: 176 gcacttcctacaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagat 235 ||||| ||||||||||| |||||||||||||| || ||| | | |||||| | | ||| Sbjct: 1488 gcactgcctacaaaggtggtatgcctgacccaagtggtttcaccagatgaactgagggat 1547 Query: 236 gatgaagaatatgaggacattatggaagacatgaggttggaagctgggaaatatggtaac 295 ||||| || ||||||||||| || ||||||||||| |||| | | ||| |||||| Sbjct: 1548 gatgaggagtatgaggacatcgtgcaagacatgagggaagaagggtgcagatacggtaac 1607 Query: 296 ttggtgaaagttgtcatcccgcg 318 ||||||||||||| |||||||| Sbjct: 1608 ctggtgaaagttgtgatcccgcg 1630 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaa 57 |||| |||||||| ||||||||||||||||||||||| Sbjct: 1327 cctgtgctgctcttaatggtatcaagatgggagacaa 1363
>emb|Y18351.1|NPL18351 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large subunit 65a Length = 2108 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 414 atggaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagtt 471 ||||||| ||||| ||||| |||| |||||| || ||||||||||| ||||||||||| Sbjct: 1648 atggaagaaaattcggtggtaaccaagttgtagctgtcttctacccggagaacaagtt 1705 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 353 ggaaaggtgttcttagagtatgcagatgttgatggctccaccaaagc 399 |||||||| || || ||||||||||||||||| || |||| |||||| Sbjct: 1587 ggaaaggtatttttggagtatgcagatgttgacggttccagcaaagc 1633
>emb|Y18350.1|NPL18350 Nicotiana plumbaginifolia mRNA for U2 snRNP auxiliary factor, large subunit 65b Length = 2204 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 414 atggaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagtt 471 ||||||| ||||||||||| |||| ||||||||| |||||||| || || |||||||| Sbjct: 1778 atggaagaaaatttggtggcaaccaagttgttgctgtcttctatccagaaaacaagtt 1835 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 350 gttggaaaggtgttcttagagtatgcagatgt 381 ||||||||||| || || |||||||||||||| Sbjct: 1714 gttggaaaggtatttttggagtatgcagatgt 1745
>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete sequence Length = 132549 Score = 60.0 bits (30), Expect = 9e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 372 atgcagatgttgatggctccaccaaagcaaagacggcgatgcatggaaggaaatttggtg 431 |||||||||| || |||| |||||||||||||||| ||||||||| ||||||||||| Sbjct: 75719 atgcagatgtcgagggcttgaccaaagcaaagacggagatgcatgggcagaaatttggtg 75660 Query: 432 gaaacc 437 | |||| Sbjct: 75659 ggaacc 75654
>gb|AF273333.1|AF273333 Lycopersicon esculentum clone BAC 19, complete sequence Length = 105308 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 414 atggaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagtt 471 ||||||| ||||||||||| |||| |||| |||| |||||||| || ||||||||||| Sbjct: 67635 atggaagaaaatttggtggtaaccaagttattgctgtcttctatccagagaacaagtt 67692 Score = 46.1 bits (23), Expect = 0.13 Identities = 59/71 (83%) Strand = Plus / Plus Query: 29 gctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaaaccagggc 88 ||||| ||||| || |||||||| || ||||||||||| || || || || ||||||||| Sbjct: 66736 gctcttaatgggattaagatgggggataaaactcttactgttaggcgggctaaccagggc 66795 Query: 89 tcagcccaacc 99 || ||||||| Sbjct: 66796 acaacccaacc 66806
>gb|AC125782.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0095P22, complete sequence Length = 162766 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Minus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaa 57 |||| |||||||| ||||||||||||||||||||||| Sbjct: 95321 cctgtgctgctcttaatggtatcaagatgggagacaa 95285 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Minus Query: 176 gcacttcctacaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagat 235 ||||| ||||||||||| |||||||||||||| || ||| | | |||||| | | ||| Sbjct: 95068 gcactgcctacaaaggtggtatgcctgacccaagtggtttcaccagatgaactgagggat 95009 Query: 236 gatgaagaatatgaggacattatggaagacatgagg 271 ||||| || ||||||||||| || ||||||||||| Sbjct: 95008 gatgaggagtatgaggacatcgtgcaagacatgagg 94973 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 290 ggtaacttggtgaaagttgtcatcccgcg 318 |||||| ||||||||||||| |||||||| Sbjct: 94631 ggtaacctggtgaaagttgtgatcccgcg 94603
>gb|AC145349.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0096I10, complete sequence Length = 171946 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaa 57 |||| |||||||| ||||||||||||||||||||||| Sbjct: 114777 cctgtgctgctcttaatggtatcaagatgggagacaa 114813 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 176 gcacttcctacaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagat 235 ||||| ||||||||||| |||||||||||||| || ||| | | |||||| | | ||| Sbjct: 115030 gcactgcctacaaaggtggtatgcctgacccaagtggtttcaccagatgaactgagggat 115089 Query: 236 gatgaagaatatgaggacattatggaagacatgagg 271 ||||| || ||||||||||| || ||||||||||| Sbjct: 115090 gatgaggagtatgaggacatcgtgcaagacatgagg 115125 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 290 ggtaacttggtgaaagttgtcatcccgcg 318 |||||| ||||||||||||| |||||||| Sbjct: 115467 ggtaacctggtgaaagttgtgatcccgcg 115495
>gb|AY224501.1| Oryza sativa (japonica cultivar-group) isolate 31147 putative U2 snRNP auxiliary factor mRNA, partial cds Length = 993 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaa 57 |||| |||||||| ||||||||||||||||||||||| Sbjct: 629 cctgtgctgctcttaatggtatcaagatgggagacaa 665 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 176 gcacttcctacaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagat 235 ||||| ||||||||||| |||||||||||||| || ||| | | |||||| | | ||| Sbjct: 790 gcactgcctacaaaggtggtatgcctgacccaagtggtttcaccagatgaactgagggat 849 Query: 236 gatgaagaatatgaggacattatggaagacatgagg 271 ||||| || ||||||||||| || ||||||||||| Sbjct: 850 gatgaggagtatgaggacatcgtgcaagacatgagg 885
>dbj|AK059255.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-H08, full insert sequence Length = 2177 Score = 58.0 bits (29), Expect = 4e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaa 57 |||| |||||||| ||||||||||||||||||||||| Sbjct: 1326 cctgtgctgctcttaatggtatcaagatgggagacaa 1362 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 176 gcacttcctacaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagat 235 ||||| ||||||||||| |||||||||||||| || ||| | | |||||| | | ||| Sbjct: 1487 gcactgcctacaaaggtggtatgcctgacccaagtggtttcaccagatgaactgagggat 1546 Query: 236 gatgaagaatatgaggacattatggaagacatgagg 271 ||||| || ||||||||||| || ||||||||||| Sbjct: 1547 gatgaggagtatgaggacatcgtgcaagacatgagg 1582 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 290 ggtaacttggtgaaagttgtcatcccgcg 318 |||||| ||||||||||||| |||||||| Sbjct: 1783 ggtaacctggtgaaagttgtgatcccgcg 1811
>ref|NM_104765.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G60830 mRNA, complete cds Length = 336 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 347 ggagttggaaaggtgttcttagagtatgcagatgttgatggctc 390 |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct: 187 ggagttgggaaggttttcttagagtatgcggatgtggatggctc 230
>ref|NM_104771.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G60900 mRNA, complete cds Length = 2085 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 347 ggagttggaaaggtgttcttagagtatgcagatgttgatggctc 390 |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct: 1720 ggagttgggaaggttttcttagagtatgcggatgtggatggctc 1763
>gb|AY140014.1| Arabidopsis thaliana putative U2 snRNP auxiliary factor (At1g60900) mRNA, complete cds Length = 2072 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 347 ggagttggaaaggtgttcttagagtatgcagatgttgatggctc 390 |||||||| ||||| |||||||||||||| ||||| |||||||| Sbjct: 1720 ggagttgggaaggttttcttagagtatgcggatgtggatggctc 1763
>gb|BT013617.1| Lycopersicon esculentum clone 132418R, mRNA sequence Length = 2047 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 414 atggaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagtttg 473 ||||||| ||||||||||| |||| |||| | || |||||||| || || |||||||| Sbjct: 1781 atggaagaaaatttggtggcaaccaagttatagctgtcttctatccagaaaacaagttct 1840 Query: 474 ctgaagaggactatgatg 491 ||||| ||||||||||| Sbjct: 1841 atgaaggggactatgatg 1858
>gb|AC174607.1| Lycopersicon esculentum, complete sequence Length = 115283 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 414 atggaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagtttg 473 ||||||| ||||||||||| |||| |||| | || |||||||| || || |||||||| Sbjct: 93740 atggaagaaaatttggtggcaaccaagttatagctgtcttctatccagaaaacaagttct 93799 Query: 474 ctgaagaggactatgatg 491 ||||| ||||||||||| Sbjct: 93800 atgaaggggactatgatg 93817
>gb|AC162528.5| Mus musculus BAC clone RP23-4P1 from chromosome 5, complete sequence Length = 219218 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Plus Query: 254 attatggaagacatgaggttggaagctgg 282 |||||||||| |||||||||||||||||| Sbjct: 24506 attatggaaggcatgaggttggaagctgg 24534
>gb|DQ019636.1| Triticum aestivum U2AF large subunit (U2AF65a) mRNA, complete cds Length = 2240 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 185 acaaaggttgtatgcctgacccaggtagttactgctgatgaattaaaagatgatgaagaa 244 |||||||| ||||||||||||||||| ||| | || ||||| | | ||||||||| ||| Sbjct: 1594 acaaaggtggtatgcctgacccaggtggtttcagcagatgaccttagagatgatgaggaa 1653 Query: 245 tatgaggacattatggaagacatga 269 || | ||||| |||||||||||| Sbjct: 1654 tacaatgacatactggaagacatga 1678 Score = 48.1 bits (24), Expect = 0.034 Identities = 27/28 (96%) Strand = Plus / Plus Query: 452 ttctaccccgagaacaagtttgctgaag 479 |||||||||||||||||||| ||||||| Sbjct: 2035 ttctaccccgagaacaagttcgctgaag 2062 Score = 48.1 bits (24), Expect = 0.034 Identities = 95/118 (80%), Gaps = 3/118 (2%) Strand = Plus / Plus Query: 21 cctgcgctgctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagcaa 80 |||| |||||| | || |||||| || |||| |||| ||||| || ||||| ||||||| Sbjct: 1430 cctgtgctgctttgaacggtatccagttgggtgacaggactctcacagtcaggcgagcaa 1489 Query: 81 accagggctcagcccaacctagaccagagcaggaaaatatccttttgcaggcacagca 138 |||| || ||| ||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct: 1490 accaaggagcag---aacctaggccagagcaagaaaacatcctcctgcaggcacagca 1544
>gb|AC156629.26| Medicago truncatula clone mth2-143f17, complete sequence Length = 130456 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 229 aaaagatgatgaagaatatgagg 251 ||||||||||||||||||||||| Sbjct: 52115 aaaagatgatgaagaatatgagg 52137
>ref|XM_787826.1| PREDICTED: Strongylocentrotus purpuratus similar to CG9998-PA (LOC588126), mRNA Length = 2055 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 230 aaagatgatgaagaatatgaggacatt 256 |||||||||||||||||||| |||||| Sbjct: 1237 aaagatgatgaagaatatgatgacatt 1263
>ref|XM_725986.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03112) partial mRNA Length = 3639 Score = 44.1 bits (22), Expect = 0.53 Identities = 28/30 (93%) Strand = Plus / Plus Query: 220 tgatgaattaaaagatgatgaagaatatga 249 ||||||| ||||||||||||||||| |||| Sbjct: 123 tgatgaagtaaaagatgatgaagaagatga 152
>gb|AC124956.29| Medicago truncatula clone mth2-14k24, complete sequence Length = 123871 Score = 44.1 bits (22), Expect = 0.53 Identities = 43/50 (86%) Strand = Plus / Plus Query: 29 gctctaaatggtatcaagatgggagacaaaactcttacggtcagacgagc 78 ||||| ||||| || ||||||||||| || |||||||| || |||||||| Sbjct: 19679 gctctgaatggaattaagatgggagataagactcttactgttagacgagc 19728
>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence Length = 110895 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 230 aaagatgatgaagaatatgagg 251 |||||||||||||||||||||| Sbjct: 84763 aaagatgatgaagaatatgagg 84784
>gb|AC091851.2| Homo sapiens chromosome 5 clone CTD-2258D22, complete sequence Length = 155606 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 366 tagagtatgcagatgttgatgg 387 |||||||||||||||||||||| Sbjct: 2725 tagagtatgcagatgttgatgg 2704
>gb|U41263.2| Caenorhabditis elegans cosmid T19D12, complete sequence Length = 42596 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 222 atgaattaaaagatgatgaaga 243 |||||||||||||||||||||| Sbjct: 18298 atgaattaaaagatgatgaaga 18319
>gb|AC150372.15| Medicago truncatula clone mth2-151k24, complete sequence Length = 100538 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 230 aaagatgatgaagaatatgagg 251 |||||||||||||||||||||| Sbjct: 63438 aaagatgatgaagaatatgagg 63459
>ref|NM_062950.2| Caenorhabditis elegans T19D12.7 (T19D12.7) mRNA, complete cds Length = 1642 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 222 atgaattaaaagatgatgaaga 243 |||||||||||||||||||||| Sbjct: 285 atgaattaaaagatgatgaaga 264
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence Length = 120787 Score = 44.1 bits (22), Expect = 0.53 Identities = 31/34 (91%) Strand = Plus / Minus Query: 357 aggtgttcttagagtatgcagatgttgatggctc 390 |||| |||||||||||||| ||||| |||||||| Sbjct: 119187 aggttttcttagagtatgcggatgtggatggctc 119154
>gb|AC079675.1|AC079675 Arabidopsis thaliana chromosome 1 BAC F23C21 genomic sequence, complete sequence Length = 20264 Score = 44.1 bits (22), Expect = 0.53 Identities = 31/34 (91%) Strand = Plus / Plus Query: 357 aggtgttcttagagtatgcagatgttgatggctc 390 |||| |||||||||||||| ||||| |||||||| Sbjct: 15553 aggttttcttagagtatgcggatgtggatggctc 15586
>gb|AC018908.8|AC018908 Arabidopsis thaliana chromosome 1 BAC T7P1 genomic sequence, complete sequence Length = 102299 Score = 44.1 bits (22), Expect = 0.53 Identities = 31/34 (91%) Strand = Plus / Plus Query: 357 aggtgttcttagagtatgcagatgttgatggctc 390 |||| |||||||||||||| ||||| |||||||| Sbjct: 22752 aggttttcttagagtatgcggatgtggatggctc 22785
>gb|AC010368.4|AC010368 Homo sapiens chromosome 5 clone CTD-2046J7, complete sequence Length = 149307 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 366 tagagtatgcagatgttgatgg 387 |||||||||||||||||||||| Sbjct: 9784 tagagtatgcagatgttgatgg 9805
>emb|CT010464.7| M.truncatula DNA sequence from clone MTH2-95O22 on chromosome 3, complete sequence Length = 117153 Score = 44.1 bits (22), Expect = 0.53 Identities = 52/62 (83%) Strand = Plus / Plus Query: 414 atggaaggaaatttggtggaaacccagttgttgcggtcttctaccccgagaacaagtttg 473 ||||||| |||||||||||||| | ||| |||| ||||| || || |||||||| |||| Sbjct: 86715 atggaagaaaatttggtggaaatcaagtaattgctgtcttttatccagagaacaaatttg 86774 Query: 474 ct 475 || Sbjct: 86775 ct 86776 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 368 gagtatgcagatgttgatggctccaccaaagc 399 |||||||| ||||||||||| || |||||||| Sbjct: 86669 gagtatgctgatgttgatggttctaccaaagc 86700
>gb|AE014826.1| Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence Length = 250663 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 gatgaattaaaagatgatgaa 241 ||||||||||||||||||||| Sbjct: 101414 gatgaattaaaagatgatgaa 101434
>gb|BC098548.1| Danio rerio zgc:110115, mRNA (cDNA clone MGC:110115 IMAGE:7285507), complete cds Length = 2083 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 233 gatgatgaagaatatgaggacattatggaagac 265 ||||||||||| |||||||| ||| |||||||| Sbjct: 1546 gatgatgaagagtatgaggagattgtggaagac 1578
>gb|AC158769.2| Mus musculus chromosome 15, clone RP23-128J3, complete sequence Length = 199472 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 504 ttatctctcttttccaatgccaata 528 |||| |||||||||||||||||||| Sbjct: 51916 ttatgtctcttttccaatgccaata 51940
>emb|BX957221.1| Methanococcus maripaludis S2 complete genome; segment 3/5 Length = 348230 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 223 tgaattaaaagatgatgaaga 243 ||||||||||||||||||||| Sbjct: 293162 tgaattaaaagatgatgaaga 293142
>ref|NM_001029956.1| Danio rerio zgc:110115 (zgc:110115), mRNA Length = 2083 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 233 gatgatgaagaatatgaggacattatggaagac 265 ||||||||||| |||||||| ||| |||||||| Sbjct: 1546 gatgatgaagagtatgaggagattgtggaagac 1578
>gb|AE011846.1| Xanthomonas axonopodis pv. citri str. 306, section 224 of 469 of the complete genome Length = 11508 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 caggcacagcagcaggtgcag 148 ||||||||||||||||||||| Sbjct: 9307 caggcacagcagcaggtgcag 9287
>emb|BX005073.7| Zebrafish DNA sequence from clone CH211-129N18, complete sequence Length = 185849 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 229 aaaagatgatgaagaatatga 249 ||||||||||||||||||||| Sbjct: 170653 aaaagatgatgaagaatatga 170633
>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete sequence Length = 585533 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 128 caggcacagcagcaggtgcag 148 ||||||||||||||||||||| Sbjct: 46861 caggcacagcagcaggtgcag 46841
>gb|AC123606.11| Mus musculus chromosome 15, clone RP24-528D12, complete sequence Length = 175623 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 504 ttatctctcttttccaatgccaata 528 |||| |||||||||||||||||||| Sbjct: 82872 ttatgtctcttttccaatgccaata 82896
>dbj|AK116043.1| Ciona intestinalis cDNA, clone:citb008l16, full insert sequence Length = 1935 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 232 agatgatgaagaatatgaggacattatggaaga 264 ||||||||| ||||||||||| || |||||||| Sbjct: 1308 agatgatgaggaatatgaggagatcatggaaga 1340
>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16, complete sequence Length = 208738 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 233 gatgatgaagaatatgaggacattatggaagac 265 ||||||||||| |||||||| ||| |||||||| Sbjct: 156795 gatgatgaagagtatgaggagattgtggaagac 156827
>gb|BC077314.1| Xenopus laevis ornithine aminotransferase (gyrate atrophy), mRNA (cDNA clone MGC:80244 IMAGE:5048763), complete cds Length = 1903 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 394 caaagcaaagacggcgatgcatggaagg 421 |||||||||||| |||| |||||||||| Sbjct: 1219 caaagcaaagactgcgacgcatggaagg 1246
>ref|XM_705646.1| Candida albicans SC5314 tyrosine-sensitive DAHP synthase (CaO19.11542), mRNA Length = 1113 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gctgatgaattaaaagatga 237 |||||||||||||||||||| Sbjct: 253 gctgatgaattaaaagatga 272
>ref|XM_705637.1| Candida albicans SC5314 tyrosine-sensitive DAHP synthase (CaO19.4060), mRNA Length = 1113 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gctgatgaattaaaagatga 237 |||||||||||||||||||| Sbjct: 253 gctgatgaattaaaagatga 272
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 ccaccaaagcaaagacggcg 409 |||||||||||||||||||| Sbjct: 1518652 ccaccaaagcaaagacggcg 1518633
>gb|AC154422.2| Mus musculus BAC clone RP24-218O2 from chromosome 13, complete sequence Length = 170866 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 acattatggaagacatgagg 271 |||||||||||||||||||| Sbjct: 144691 acattatggaagacatgagg 144672
>emb|CR974476.4| Mouse DNA sequence from clone RP24-469J5 on chromosome 2, complete sequence Length = 138122 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 109429 tcttttccaatgccaatagt 109448
>gb|BC045249.1| Xenopus laevis ornithine aminotransferase, mRNA (cDNA clone MGC:53882 IMAGE:5543139), complete cds Length = 1910 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 394 caaagcaaagacggcgatgcatggaagg 421 |||||||||||| | ||||||||||||| Sbjct: 1208 caaagcaaagactgtgatgcatggaagg 1235
>ref|XM_720188.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY04905) partial mRNA Length = 1371 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 gatgatgaagaatatgagga 252 |||||||||||||||||||| Sbjct: 754 gatgatgaagaatatgagga 773
>emb|CR848038.1| Chlamydophila abortus strain S26/3, complete genome Length = 1144377 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 atgcagatgttgatggctcc 391 |||||||||||||||||||| Sbjct: 570356 atgcagatgttgatggctcc 570375
>gb|AC165255.2| Mus musculus BAC clone RP23-239B8 from chromosome 13, complete sequence Length = 205903 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 acattatggaagacatgagg 271 |||||||||||||||||||| Sbjct: 151809 acattatggaagacatgagg 151828
>emb|BX957223.1| Methanococcus maripaludis S2 complete genome; segment 5/5 Length = 268122 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 gtagttactgctgatgaattaaaa 232 |||||||||| ||||||||||||| Sbjct: 157223 gtagttactgttgatgaattaaaa 157246
>emb|BX571860.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 2/17 Length = 349287 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 atgccaatagtgttttgtgt 539 |||||||||||||||||||| Sbjct: 127486 atgccaatagtgttttgtgt 127467
>emb|CR788287.7| Mouse DNA sequence from clone RP23-362B9 on chromosome 2, complete sequence Length = 98311 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 29461 tcttttccaatgccaatagt 29442
>emb|BX324204.32| Mouse DNA sequence from clone RP23-86F8 on chromosome 2, complete sequence Length = 90051 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 85982 tcttttccaatgccaatagt 86001
>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome Length = 2225959 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 gaacaagtttgctgaagagg 482 |||||||||||||||||||| Sbjct: 918491 gaacaagtttgctgaagagg 918472
>dbj|AK140724.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030019B04 product:unclassifiable, full insert sequence Length = 2461 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 2284 tcttttccaatgccaatagt 2303
>gb|AC091169.7| Homo sapiens chromosome 18, clone RP11-809A17, complete sequence Length = 163138 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 464 aacaagtttgctgaagagga 483 |||||||||||||||||||| Sbjct: 136778 aacaagtttgctgaagagga 136797
>emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chromosome 2, complete sequence Length = 193326 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 168721 tcttttccaatgccaatagt 168702 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 68714 tcttttccaatgccaatagt 68695
>emb|CR354442.5| Mouse DNA sequence from clone RP24-562O19 on chromosome 2, complete sequence Length = 145110 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 139701 tcttttccaatgccaatagt 139720 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 7226 tcttttccaatgccaatagt 7207
>gb|AF232004.3| Pseudomonas syringae pv. tomato strain DC3000 Hrp pathogenicity island, complete sequence Length = 52498 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ccaccaaagcaaagacggcg 409 |||||||||||||||||||| Sbjct: 35312 ccaccaaagcaaagacggcg 35331
>ref|NM_001028646.1| Caenorhabditis elegans Serpentine Receptor, class W family member (srw-68) (srw-68) mRNA, complete cds Length = 1017 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 aaatttggtggaaacccagt 441 |||||||||||||||||||| Sbjct: 599 aaatttggtggaaacccagt 580
>ref|NM_001028647.1| Caenorhabditis elegans Serpentine Receptor, class W family member (srw-68) (srw-68) mRNA, complete cds Length = 1140 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 422 aaatttggtggaaacccagt 441 |||||||||||||||||||| Sbjct: 599 aaatttggtggaaacccagt 580
>gb|BC040773.1| Mus musculus similar to LRRGT00085, mRNA (cDNA clone IMAGE:4505796) Length = 4158 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 2223 tcttttccaatgccaatagt 2242
>gb|U53139.2| Caenorhabditis elegans cosmid F18E3, complete sequence Length = 23138 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 aaatttggtggaaacccagt 441 |||||||||||||||||||| Sbjct: 13837 aaatttggtggaaacccagt 13856
>emb|BX890623.6| Mouse DNA sequence from clone RP23-83O23 on chromosome 2, complete sequence Length = 226542 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 31420 tcttttccaatgccaatagt 31401
>emb|BX842025.1|CNS09Y86 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS64ZA09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1831 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 222 atgaattaaaagatgatgaagaat 245 |||| ||||||||||||||||||| Sbjct: 1582 atgagttaaaagatgatgaagaat 1559
>emb|BX813319.4| Mouse DNA sequence from clone RP23-54B12 on chromosome 2, complete sequence Length = 217197 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 101196 tcttttccaatgccaatagt 101215
>gb|AY005479.1| Xenopus laevis ornithine aminotransferase (OAT) mRNA, complete cds Length = 1320 Score = 40.1 bits (20), Expect = 8.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 394 caaagcaaagacggcgatgcatggaagg 421 |||||||||||| | ||||||||||||| Sbjct: 1150 caaagcaaagactgtgatgcatggaagg 1177
>gb|AC079121.5| Homo sapiens BAC clone RP11-368O9 from 2, complete sequence Length = 79228 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 aagatgggagacaaaactct 63 |||||||||||||||||||| Sbjct: 36044 aagatgggagacaaaactct 36063
>gb|AC133528.4| Homo sapiens BAC clone RP11-367H1 from 2, complete sequence Length = 151700 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 acttgtgtatcaagttggtg 176 |||||||||||||||||||| Sbjct: 131599 acttgtgtatcaagttggtg 131580
>emb|BX682537.3| Mouse DNA sequence from clone RP23-376N23 on chromosome 2, complete sequence Length = 186050 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 122007 tcttttccaatgccaatagt 121988 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 24423 tcttttccaatgccaatagt 24404
>emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, complete sequence Length = 229574 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 gtgttcttagagtatgcagatgtt 382 |||||||||||||||| ||||||| Sbjct: 106081 gtgttcttagagtatgtagatgtt 106104
>emb|BX511235.10| Mouse DNA sequence from clone RP23-232H13 on chromosome 2, complete sequence Length = 169581 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 161120 tcttttccaatgccaatagt 161139 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 71711 tcttttccaatgccaatagt 71730
>emb|BX284639.15| Mouse DNA sequence from clone RP24-87L14 on chromosome 2, complete sequence Length = 115602 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 6064 tcttttccaatgccaatagt 6045
>emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on chromosome 2, complete sequence Length = 218484 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 123079 tcttttccaatgccaatagt 123098
>emb|BX005149.16| Mouse DNA sequence from clone RP24-574J13 on chromosome 2, complete sequence Length = 179228 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 129157 tcttttccaatgccaatagt 129176
>emb|CT010482.9| Mouse DNA sequence from clone RP23-282O12 on chromosome 2, complete sequence Length = 188883 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 93747 tcttttccaatgccaatagt 93766
>emb|CR955031.3| Mouse DNA sequence from clone RP24-395K22 on chromosome 2, complete sequence Length = 178000 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 46019 tcttttccaatgccaatagt 46000
>gb|U16118.1|PSU16118 Pseudomonas syringae pv. tomato avrE avirulence locus, transcriptional units II and III, promoter region, and orf, partial cds Length = 2008 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ccaccaaagcaaagacggcg 409 |||||||||||||||||||| Sbjct: 1256 ccaccaaagcaaagacggcg 1275
>emb|AL845456.11| Mouse DNA sequence from clone RP23-90C6 on chromosome 2, complete sequence Length = 158544 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 152438 tcttttccaatgccaatagt 152457
>gb|U97505.1|PSU97505 Pseudomonas syringae avirulence protein (avrE) and avirulence protein (avrF) genes, complete cds Length = 6130 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 ccaccaaagcaaagacggcg 409 |||||||||||||||||||| Sbjct: 1134 ccaccaaagcaaagacggcg 1153
>emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on chromosome 2, complete sequence Length = 128936 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 36600 tcttttccaatgccaatagt 36581
>emb|CR394545.9| Zebrafish DNA sequence from clone CH211-103E6 in linkage group 15, complete sequence Length = 177018 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 actgctgatgaattaaaaga 234 |||||||||||||||||||| Sbjct: 83724 actgctgatgaattaaaaga 83743
>gb|U53216.1|CAU53216 Candida albicans 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (ARO4) gene, complete cds Length = 2184 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 gctgatgaattaaaagatga 237 |||||||||||||||||||| Sbjct: 713 gctgatgaattaaaagatga 732
>emb|AL845494.3| Mouse DNA sequence from clone RP23-330D3 on chromosome 2, complete sequence Length = 216517 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 111903 tcttttccaatgccaatagt 111884
>emb|AL845491.3| Mouse DNA sequence from clone RP23-360A2 on chromosome 2, complete sequence Length = 201381 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 tcttttccaatgccaatagt 530 |||||||||||||||||||| Sbjct: 142351 tcttttccaatgccaatagt 142332 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,795,803 Number of Sequences: 3902068 Number of extensions: 5795803 Number of successful extensions: 117944 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 108 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117562 Number of HSP's gapped (non-prelim): 374 length of query: 606 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 583 effective length of database: 17,143,297,704 effective search space: 9994542561432 effective search space used: 9994542561432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
