ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25f01 |
|---|---|
| Clone Library Name | barley_pub |
>RL16_MYCGE (P47404) 50S ribosomal protein L16| Length = 138 Score = 30.8 bits (68), Expect = 0.81 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +3 Query: 144 ACGDLG-ANTRGSWICARTFRSARPASRICC*FDASRRIRLFPAVS 278 A G+ G T+G+WI AR SAR A C IR+FP +S Sbjct: 28 AFGEYGIVATKGNWIDARAIESARVAISKCLGKTGKMWIRIFPHMS 73
>RL16_MYCPN (P41204) 50S ribosomal protein L16| Length = 139 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +3 Query: 144 ACGDLG-ANTRGSWICARTFRSARPASRICC*FDASRRIRLFPAVS 278 A G+ G T+G+WI AR SAR A C IR+FP +S Sbjct: 28 AFGEYGLVATKGNWIDARAIESARIAISKCLGKTGKMWIRIFPHMS 73
>DYRK3_DROME (P83102) Putative dual specificity| tyrosine-phosphorylation-regulated kinase 3 homolog (EC 2.7.12.1) Length = 828 Score = 30.4 bits (67), Expect = 1.1 Identities = 24/76 (31%), Positives = 34/76 (44%) Frame = -3 Query: 325 PTNLPEKTLRPPPXQLETAGNSLIRREASNQQQIRDAGLADRNVRAQIQLPRVFAPRSPQ 146 PT+LP+ ++ L G + E +N+ Q RD+GL L R F P Sbjct: 42 PTSLPQIQIQMINQNLTHTGIAQNNTEKANRHQYRDSGLQ--------YLTRCF---EPL 90 Query: 145 AQLTDQKEKSASQIAN 98 A L D KE +Q +N Sbjct: 91 AMLNDSKEDFPTQPSN 106
>HOW_DROME (O01367) Protein held out wings (KH-domain protein KH93F) (Putative| RNA-binding protein) (Protein muscle-specific) (Protein wings held out) (Protein struthio) (Quaking-related 93F) Length = 405 Score = 30.0 bits (66), Expect = 1.4 Identities = 15/48 (31%), Positives = 24/48 (50%) Frame = -3 Query: 241 SNQQQIRDAGLADRNVRAQIQLPRVFAPRSPQAQLTDQKEKSASQIAN 98 + QQQ + A + Q Q P+V P +PQ Q+++S IA+ Sbjct: 30 AQQQQAQAQAQAQAQAQQQQQAPQVVVPMTPQHLTPQQQQQSTQSIAD 77
>KLF15_MOUSE (Q9EPW2) Krueppel-like factor 15 (Cardiovascular Kruppel-like| factor) Length = 415 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/59 (27%), Positives = 24/59 (40%) Frame = -2 Query: 197 CSCADPAPSRVCSKIAASSAHRSEGEICESDSKRLIRINHGRGPHLAQGSKRIRSGNWR 21 CSCA P CS +A ++G I + R + G + S + G+WR Sbjct: 50 CSCASPDSQAFCSCYSAGPGPEAQGSILDFLLSRATLGSGGGSGGIGDSSGPVTWGSWR 108
>K1967_MOUSE (Q8VDP4) Protein KIAA1967 homolog| Length = 922 Score = 28.9 bits (63), Expect = 3.1 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Frame = -3 Query: 319 NLPEKTLRPP-PXQLETAGNSLIRREASNQQQ---IRDAGLADRNVRAQIQLPRV---FA 161 +LPEK + PP P + E A ++ E + +++ + + + A+ P Sbjct: 561 SLPEKVVSPPEPEKEEAAKEDAVKEEEAVKEEAVKVSKDEVQNEGTAAESDSPLKEDGLL 620 Query: 160 PRSPQAQLTDQKEKSASQIANG*FE*IMDADLTLPRDRSGFDQETGGQ 17 P+ P + +++EK+ + A E +D DL L RD G D+ G + Sbjct: 621 PKRPSSG-GEEEEKARGEAAEDLCEMALDPDLLLLRD-DGEDEFAGAK 666
>TOPRS_MOUSE (Q80Z37) Ubiquitin-protein E3 ligase Topors (EC 6.3.2.-)| (SUMO1-protein E3 ligase Topors) (Topoisomerase I-binding RING finger protein) (Topoisomerase I-binding arginine/serine-rich protein) (Tumor suppressor p53-binding protein 3) (p53-bindi Length = 1033 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -2 Query: 170 RVCSKIAASSAHRSEGEICESDSKRLIRINHGRGPHLAQGSKRIRS 33 RVCS + HR G SDS+ R H H G KR+R+ Sbjct: 582 RVCSPY--NHRHRKGGRSRSSDSRSQSRSGHDPRNHRKHGKKRLRN 625
>DEF2_PROMM (Q7V5F9) Peptide deformylase 2 (EC 3.5.1.88) (PDF 2) (Polypeptide| deformylase 2) Length = 201 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/42 (35%), Positives = 22/42 (52%) Frame = -3 Query: 316 LPEKTLRPPPXQLETAGNSLIRREASNQQQIRDAGLADRNVR 191 +P++ L PP Q+ T GN ++R Q R G D +VR Sbjct: 21 VPKEPLDHPPLQIHTLGNGVLR------QSTRRIGKVDESVR 56
>TAB3_XENLA (Q7ZXH3) Mitogen-activated protein kinase kinase kinase| 7-interacting protein 3 homolog Length = 692 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/22 (50%), Positives = 12/22 (54%) Frame = +1 Query: 13 PPGLQFPDRIRFDPWAR*GPRP 78 PP LQ P + PW R PRP Sbjct: 635 PPDLQAPSSLDIGPWQRASPRP 656
>CUBN_MOUSE (Q9JLB4) Cubilin precursor (Intrinsic factor-cobalamin receptor)| Length = 3623 Score = 28.1 bits (61), Expect = 5.2 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +3 Query: 312 GKFVGSRLPPPRATTALVLIII 377 G++ G +PPP ATT LI++ Sbjct: 1348 GRYCGENIPPPGATTGSKLIVV 1369
>AAKB1_RAT (P80386) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) (5'-AMP-activated protein kinase 40 kDa subunit) Length = 269 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 267 PAVSSWXGGGRRVF-SGKFVG-SRLPPPRATTALVLII 374 P V W GGG+ V+ SG F S+LP R+ V I+ Sbjct: 78 PTVFRWTGGGKEVYLSGSFNNWSKLPLTRSQNNFVAIL 115
>AAKB1_MOUSE (Q9R078) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) Length = 269 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 267 PAVSSWXGGGRRVF-SGKFVG-SRLPPPRATTALVLII 374 P V W GGG+ V+ SG F S+LP R+ V I+ Sbjct: 78 PTVFRWTGGGKEVYLSGSFNNWSKLPLTRSQNNFVAIL 115
>GLYA1_BORPA (Q7W1I6) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 430 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -1 Query: 360 EPLSHEVEADEIPRTCRRK 304 +P+SH ++ DE+ RT RR+ Sbjct: 159 DPVSHRIDMDEVERTARRE 177
>GLYA1_BORBR (Q7WPH6) Serine hydroxymethyltransferase 1 (EC 2.1.2.1) (Serine| methylase 1) (SHMT 1) Length = 430 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = -1 Query: 360 EPLSHEVEADEIPRTCRRK 304 +P+SH ++ DE+ RT RR+ Sbjct: 159 DPVSHRIDMDEVERTARRE 177
>EI2BA_CAEEL (P34604) Putative translation initiation factor eIF-2B alpha| subunit (eIF-2B GDP-GTP exchange factor) Length = 305 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +2 Query: 275 LELXRRRAKSFLRQVRGISSASTSC 349 L+L R+RA+SF++ VRG + + C Sbjct: 94 LDLYRQRARSFIKNVRGSRAKISKC 118
>DVL1_HUMAN (O14640) Segment polarity protein dishevelled homolog DVL-1| (Dishevelled-1) (DSH homolog 1) Length = 670 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/76 (28%), Positives = 32/76 (42%) Frame = -1 Query: 333 DEIPRTCRRKLFARRRXSSRPPGTA*SVVKHQISNRSETPA*QIGMFVRRSSSLACLLQD 154 +E PRT RRR PP +A + + ++ + S + + G R SSS Sbjct: 154 EEAPRTNGHPRGDRRRDVGLPPDSASTALSSELESSSFVDSDEDGSTSRLSSSTEQSTSS 213 Query: 153 RRKLSSPIRRRNLRVR 106 R RRR R+R Sbjct: 214 RLIRKHKRRRRKQRLR 229
>AAKB1_PIG (P80387) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) (5'-AMP-activated protein kinase 40 kDa subunit) (Fragment) Length = 122 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 267 PAVSSWXGGGRRVF-SGKFVG-SRLPPPRATTALVLII 374 P V W GGG+ V+ SG F S+LP R+ V I+ Sbjct: 44 PTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAIL 81
>AAKB1_PONPY (Q5R801) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) Length = 269 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 267 PAVSSWXGGGRRVF-SGKFVG-SRLPPPRATTALVLII 374 P V W GGG+ V+ SG F S+LP R+ V I+ Sbjct: 78 PTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAIL 115
>AAKB1_HUMAN (Q9Y478) 5'-AMP-activated protein kinase subunit beta-1 (AMPK| beta-1 chain) (AMPKb) Length = 269 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 267 PAVSSWXGGGRRVF-SGKFVG-SRLPPPRATTALVLII 374 P V W GGG+ V+ SG F S+LP R+ V I+ Sbjct: 78 PTVFRWTGGGKEVYLSGSFNNWSKLPLTRSHNNFVAIL 115
>PGK_CHRVO (Q7P1M4) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 391 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/56 (25%), Positives = 25/56 (44%) Frame = +1 Query: 151 AILEQTREGAGSAHEHSDLLGRRLGSVADLMLHDXXXXXXXXXXXXXXXEEFSPAS 318 A+LE R G +++D LGR ++ D+ +HD +F+P + Sbjct: 107 AMLENVRLNKGEK-KNNDELGRAYAALCDVFVHDAFGTAHRAEASTHAVAKFAPVA 161
>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven| Length = 342 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -2 Query: 89 RINHGRGPHLAQGSKRIRSGNWRPGG 12 R GRG +G +R G W PGG Sbjct: 44 RRGRGRGFRRGRGGGGLRGGRWEPGG 69
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -2 Query: 188 ADPAPSRVCSKIAASSAHRSEGEICESDSKRLIRINHGRGPH 63 A PA V + A E EI E+D ++ +R + R PH Sbjct: 985 AQPAHEAVEKETTEKEATEKEAEIVEADKEKELRNHQPREPH 1026 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,726,058 Number of Sequences: 219361 Number of extensions: 1002385 Number of successful extensions: 2927 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2863 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2927 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
