ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24p18 |
|---|---|
| Clone Library Name | barley_pub |
>CSN7_ARATH (Q94JU3) COP9 signalosome complex subunit 7 (CSN complex subunit 7)| (FUSCA protein 5) (FUSCA5) Length = 260 Score = 219 bits (558), Expect = 5e-57 Identities = 116/177 (65%), Positives = 136/177 (76%) Frame = +2 Query: 86 MDAERRQAELIEXXXXXXXXXXXXXXXXXXVLEATSHPSLFAFSELLTLPALSKLKGTHY 265 MD E++QAE+I+ ++EATSHPSLFAFSE+L LP +++L+GT Sbjct: 1 MDIEQKQAEIIDQLVKRASTCKSEALGPL-IIEATSHPSLFAFSEILALPNVAQLEGTTD 59 Query: 266 ASSLDLLRLFAYGTLKDYKSNSSTLPALLPDQARKLKQLSVLTLAESTKVLPYDQLMQEL 445 + LDLLRLFA+GT DYK N++ LP L PDQ KLKQL+VLTLAES KVLPYD LM EL Sbjct: 60 SVYLDLLRLFAHGTWGDYKCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVEL 119 Query: 446 DVSNVRELEDFLINECMYSGIVRGKLDQLRRCFEVQFAAGRDLTPDQLTNMIETLSD 616 DVSNVRELEDFLINECMY+GIVRGKLDQL+RCFEV FAAGRDL P QL NM+ TLS+ Sbjct: 120 DVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGNMLHTLSN 176
>CSN7B_HUMAN (Q9H9Q2) COP9 signalosome complex subunit 7b (Signalosome subunit| 7b) (SGN7b) (JAB1-containing signalosome subunit 7b) Length = 264 Score = 117 bits (293), Expect = 3e-26 Identities = 63/147 (42%), Positives = 93/147 (63%) Frame = +2 Query: 176 VLEATSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLP 355 VLEA P ++ F ELL L + +L A+ L LL LFAYGT DY +N +LP L Sbjct: 34 VLEA---PGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELST 90 Query: 356 DQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIVRGKLDQLR 535 Q KLK L++++LA K +PY L+++L++ N+RELED +I E +Y+ I++GKLDQ Sbjct: 91 AQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRN 149 Query: 536 RCFEVQFAAGRDLTPDQLTNMIETLSD 616 + EV F GRD+ + N+++TL + Sbjct: 150 QLLEVDFCIGRDIRKKDINNIVKTLHE 176
>CSN7B_MOUSE (Q8BV13) COP9 signalosome complex subunit 7b (Signalosome subunit| 7b) (SGN7b) (JAB1-containing signalosome subunit 7b) Length = 264 Score = 117 bits (292), Expect = 4e-26 Identities = 63/147 (42%), Positives = 93/147 (63%) Frame = +2 Query: 176 VLEATSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLP 355 VLEA P ++ F ELL L + +L A+ L LL LFAYGT DY +N +LP L Sbjct: 34 VLEA---PGVYVFGELLELANVQELAEGANAAYLQLLNLFAYGTYPDYIANKESLPELSV 90 Query: 356 DQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIVRGKLDQLR 535 Q KLK L++++LA K +PY L+++L++ N+RELED +I E +Y+ I++GKLDQ Sbjct: 91 AQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRNLRELEDLII-EAVYTDIIQGKLDQRN 149 Query: 536 RCFEVQFAAGRDLTPDQLTNMIETLSD 616 + EV F GRD+ + N+++TL + Sbjct: 150 QLLEVDFCIGRDIRKKDINNIVKTLHE 176
>CSN7A_MOUSE (Q9CZ04) COP9 signalosome complex subunit 7a (Signalosome subunit| 7a) (SGN7a) (JAB1-containing signalosome subunit 7a) Length = 275 Score = 112 bits (280), Expect = 9e-25 Identities = 61/147 (41%), Positives = 92/147 (62%) Frame = +2 Query: 176 VLEATSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLP 355 VLEA P ++ F ELL +P + +L + +AS+ LL +FAYGT DY + + LP L Sbjct: 34 VLEA---PGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTD 90 Query: 356 DQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIVRGKLDQLR 535 Q KL+ LSV+TLA K +PY L++ L + NVR+LED +I E +Y+ ++RG LDQ Sbjct: 91 AQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRN 149 Query: 536 RCFEVQFAAGRDLTPDQLTNMIETLSD 616 + EV ++ GRD+ L+ + +TL + Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIAQTLQE 176
>CSN7A_PONPY (Q5R762) COP9 signalosome complex subunit 7a (Signalosome subunit| 7a) (SGN7a) (JAB1-containing signalosome subunit 7a) Length = 275 Score = 111 bits (278), Expect = 1e-24 Identities = 61/147 (41%), Positives = 91/147 (61%) Frame = +2 Query: 176 VLEATSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLP 355 VLEA P ++ F ELL +P + +L + +AS+ LL +FAYGT DY + + LP L Sbjct: 34 VLEA---PGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTE 90 Query: 356 DQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIVRGKLDQLR 535 Q KL+ LSV+TLA K +PY L++ L + NVR+LED +I E +Y+ ++RG LDQ Sbjct: 91 AQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRN 149 Query: 536 RCFEVQFAAGRDLTPDQLTNMIETLSD 616 + EV ++ GRD+ L+ + TL + Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQE 176
>CSN7A_HUMAN (Q9UBW8) COP9 signalosome complex subunit 7a (Signalosome subunit| 7a) (SGN7a) (JAB1-containing signalosome subunit 7a) (Dermal papilla-derived protein 10) Length = 275 Score = 111 bits (278), Expect = 1e-24 Identities = 61/147 (41%), Positives = 91/147 (61%) Frame = +2 Query: 176 VLEATSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLP 355 VLEA P ++ F ELL +P + +L + +AS+ LL +FAYGT DY + + LP L Sbjct: 34 VLEA---PGVYVFGELLDMPNVRELAESDFASTFRLLTVFAYGTYADYLAEARNLPPLTE 90 Query: 356 DQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIVRGKLDQLR 535 Q KL+ LSV+TLA K +PY L++ L + NVR+LED +I E +Y+ ++RG LDQ Sbjct: 91 AQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRNVRQLEDLVI-EAVYADVLRGSLDQRN 149 Query: 536 RCFEVQFAAGRDLTPDQLTNMIETLSD 616 + EV ++ GRD+ L+ + TL + Sbjct: 150 QRLEVDYSIGRDIQRQDLSAIARTLQE 176
>CSN7_DROME (Q9V4S8) COP9 signalosome complex subunit 7 (Signalosome subunit 7)| (Dch7) Length = 278 Score = 110 bits (274), Expect = 4e-24 Identities = 57/145 (39%), Positives = 87/145 (60%) Frame = +2 Query: 176 VLEATSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLP 355 + +A P++F F ELL P++ +LK + + L LFAYGT K+Y++ L P Sbjct: 39 IRQALEAPNVFVFGELLAEPSVLQLKDGPDSKHFETLNLFAYGTYKEYRAQPEKFIELTP 98 Query: 356 DQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIVRGKLDQLR 535 +KL+ L++++LA K +PY L+ EL++ NVR LED +I E +Y+ I+ GKL Q Sbjct: 99 AMQKKLQHLTIVSLAIKAKSIPYALLLSELEIDNVRHLEDIII-EAIYADIIHGKLFQNT 157 Query: 536 RCFEVQFAAGRDLTPDQLTNMIETL 610 R EV +A GRD+ P ++ETL Sbjct: 158 RILEVDYAQGRDIPPGYTGQIVETL 182
>CSN7_BRAOL (P68395) COP9 signalosome complex subunit 7 (CSN complex subunit 7)| (FUSCA protein 5) (FUSCA5) (Fragments) Length = 71 Score = 55.5 bits (132), Expect = 1e-07 Identities = 33/62 (53%), Positives = 40/62 (64%) Frame = +2 Query: 281 LLRLFAYGTLKDYKSNSSTLPALLPDQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNV 460 L+RLFA+GT DYK N+S +P L PDQ LKQL+VLTLAES K + M E+D Sbjct: 8 LVRLFAHGTWGDYKCNASRIPQLSPDQI--LKQLTVLTLAESNK--KWADNMSEIDKKEA 63 Query: 461 RE 466 E Sbjct: 64 EE 65
>CSN7_CAEEL (Q94261) Probable COP9 signalosome complex subunit 7 (Signalosome| subunit 7) Length = 390 Score = 54.3 bits (129), Expect = 3e-07 Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 8/129 (6%) Frame = +2 Query: 176 VLEATSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLP 355 V A P F+F L L A+ LK T L LF GTLKDYK + P + Sbjct: 216 VRTAVVDPKSFSFDHLERLSAVKALK-TSDPLMFTALELFISGTLKDYKEFVAKNPKFVT 274 Query: 356 DQAR--------KLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIV 511 + + K++ L++++LAE + D+L ++LD+ LE+F+I+ + I Sbjct: 275 EHLKVDETILLKKIRLLTLMSLAEEKNEISLDELAKQLDILADETLEEFVIDAIQVNAI- 333 Query: 512 RGKLDQLRR 538 GK++++ R Sbjct: 334 SGKINEMAR 342
>RPN9_YEAST (Q04062) 26S proteasome regulatory subunit RPN9 (Proteasome| non-ATPase subunit 7) Length = 393 Score = 38.5 bits (88), Expect = 0.016 Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 9/145 (6%) Frame = +2 Query: 203 LFAFSELLTLPALSKL-KGTHYASSLDLLRLFAYGTLKDYKS----NSSTLPALLPDQAR 367 ++ F ELL P + + ++Y LL G + S S +P L ++ Sbjct: 227 IYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESF 286 Query: 368 KLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELE----DFLINECMYSGIVRGKLDQLR 535 +++ ++TL E+ V L E D+S L + L+ + G+++G +DQ+ Sbjct: 287 LRQKICLMTLIETVFVKNIRMLSFE-DISKATHLPKDNVEHLVMRAISLGLLKGSIDQVN 345 Query: 536 RCFEVQFAAGRDLTPDQLTNMIETL 610 + + R ++ DQ+T M + L Sbjct: 346 ELVTISWVQPRIISGDQITKMKDRL 370
>CSN9_YEAST (Q03981) COP9 signalosome complex subunit 9| Length = 162 Score = 33.9 bits (76), Expect = 0.39 Identities = 23/86 (26%), Positives = 45/86 (52%) Frame = +2 Query: 281 LLRLFAYGTLKDYKSNSSTLPALLPDQARKLKQLSVLTLAESTKVLPYDQLMQELDVSNV 460 L +FA+G +KD N L +L+ KL++L+++TL+E L Y+ + +E + + Sbjct: 34 LFEIFAFGNIKDLPEN-IILTSLM---RSKLEKLTLVTLSEIYNELSYELIKEECQIEDD 89 Query: 461 RELEDFLINECMYSGIVRGKLDQLRR 538 +E LI I + ++D + + Sbjct: 90 GIIESHLI---QLQNIFKAEMDSVSK 112
>SYTM_ARATH (O04630) Threonyl-tRNA synthetase, mitochondrial precursor (EC| 6.1.1.3) (Threonine--tRNA ligase) (ThrRS) Length = 709 Score = 32.7 bits (73), Expect = 0.87 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%) Frame = +2 Query: 221 LLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSN----SSTLPALLPDQARKLKQLSV 388 LL L A S + T +SSL LL ++ T+ +N + L A++P + + +Q+ Sbjct: 2 LLRLTARSIRRFTTSSSSLPLLSSSSFCTVPTMAANHPKDEAYLSAVIPKRIKLFEQIQA 61 Query: 389 LTLAESTKVLPYDQLMQELDVSNVRE 466 L E+ K LP+D + L NV+E Sbjct: 62 NQL-ENLKSLPHDPIKVTLPDGNVKE 86
>UXAC_BACLD (Q65F21) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)| (Uronic isomerase) Length = 473 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 12/77 (15%) Frame = +2 Query: 308 LKDYKSNSSTLPALLPDQARKLKQ------LSVLTLAESTKVLPYDQLMQELD--VSNVR 463 LKD N S LP PD+A ++ Q + L A K+ YD ++ L + Sbjct: 169 LKDEDFNVSVLPGFRPDKAMEINQEGFAAWVRKLETASGMKIANYDDFLKALKNRIDFFH 228 Query: 464 E----LEDFLINECMYS 502 E + D IN+ MY+ Sbjct: 229 EAGGRISDHAINQMMYT 245
>GCN1_YEAST (P33892) Translational activator GCN1| Length = 2672 Score = 30.4 bits (67), Expect = 4.3 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%) Frame = +2 Query: 230 LPALSKLKGTHYASSLDLLRLFAYGTLKDY--KSNSSTLPALLPDQARKLKQLSVLTLAE 403 LP L+ + TH ASS ++LR A TL D + + L LLP L + S + Sbjct: 1868 LPTLTGMIVTHLASSSNVLRNIAAQTLGDLVRRVGGNALSQLLPSLEESLIETSNSDSRQ 1927 Query: 404 STKVLPYDQLMQELDVSNVRELEDFLIN 487 + Y +L++ + + + ++N Sbjct: 1928 GVCIALY-ELIESASTETISQFQSTIVN 1954
>TOP2_PLAFK (P41001) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1398 Score = 30.4 bits (67), Expect = 4.3 Identities = 17/51 (33%), Positives = 27/51 (52%) Frame = +2 Query: 248 LKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLPDQARKLKQLSVLTLA 400 LK Y++ LD+L+ F Y LK Y++ S L + L + R + + LA Sbjct: 1029 LKLQRYSTELDILKEFCYQRLKAYENRKSYLISKLEKEKRIISNKTKFILA 1079
>GSPK_VIBCH (P45781) General secretion pathway protein K (Cholera toxin| secretion protein epsK) Length = 336 Score = 30.4 bits (67), Expect = 4.3 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 503 GIVRGKLDQLRRCFEVQFAAGRDLTPDQL 589 G VRGK+ ++ CF + AG LTPD + Sbjct: 90 GQVRGKIRDMQACFNLNALAGVKLTPDSV 118
>SOMA_BUFMA (O73849) Somatotropin precursor (Growth hormone)| Length = 213 Score = 29.6 bits (65), Expect = 7.4 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 6/94 (6%) Frame = +2 Query: 200 SLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLPDQA----- 364 ++F +SE T+PA + TH S +DLLR F+ ++ + + +L L +Q Sbjct: 74 AMFCYSE--TIPAPTDKDNTHQKSDIDLLR-FSLTLIQSWMTPVQSLNKLFTNQVFGNAV 130 Query: 365 -RKLKQLSVLTLAESTKVLPYDQLMQELDVSNVR 463 KL+ L A LM+ELD N R Sbjct: 131 YEKLRDLEEGLYA----------LMRELDDGNAR 154
>KIP1_YEAST (P28742) Kinesin-like protein KIP1 (Chromosome instability protein| 9) Length = 1111 Score = 29.6 bits (65), Expect = 7.4 Identities = 18/63 (28%), Positives = 35/63 (55%) Frame = +2 Query: 428 QLMQELDVSNVRELEDFLINECMYSGIVRGKLDQLRRCFEVQFAAGRDLTPDQLTNMIET 607 +L++E D+ +++L++ LINE S +L +++R F+ + R D+L I+ Sbjct: 710 KLIKEQDLE-IKKLKNDLINERRISNQFNQQLAEMKRYFQDHVSRTRSEFHDELNKCIDN 768 Query: 608 LSD 616 L D Sbjct: 769 LKD 771
>EF3_SCHPO (O94489) Elongation factor 3 (EF-3)| Length = 1047 Score = 29.6 bits (65), Expect = 7.4 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +2 Query: 368 KLKQLSVLTLAESTKVLPYDQLMQELDVSNVRELEDFLINECMYSGIV 511 K+K + ++ +L D+ LDV NV LE+FL+N+ S I+ Sbjct: 554 KMKLALTRAMFKNPDILLLDEPTNHLDVVNVAWLENFLVNQKDVSSII 601
>WBS14_MOUSE (Q99MZ3) Williams-Beuren syndrome chromosome region 14 protein| homolog (Mlx interactor) (MLX-interacting protein-like) Length = 864 Score = 29.3 bits (64), Expect = 9.7 Identities = 29/93 (31%), Positives = 36/93 (38%) Frame = +2 Query: 188 TSHPSLFAFSELLTLPALSKLKGTHYASSLDLLRLFAYGTLKDYKSNSSTLPALLPDQAR 367 T H F +L P G +SL LR + L+ Y S LPAL P Sbjct: 774 TLHNWKFWVFSILIRPLFESFNGMVSTASLHSLRQTSLAWLEQYCS----LPALRPTVLN 829 Query: 368 KLKQLSVLTLAESTKVLPYDQLMQELDVSNVRE 466 L+QLS ST +L L+ E V E Sbjct: 830 SLRQLST-----STSILTDPSLVPEQATRAVTE 857 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,165,389 Number of Sequences: 219361 Number of extensions: 935847 Number of successful extensions: 3005 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2953 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2997 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
