| Clone Name | basd24p18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY105643.1| Zea mays PCO067509 mRNA sequence Length = 1373 Score = 509 bits (257), Expect = e-141 Identities = 467/537 (86%) Strand = Plus / Plus Query: 79 gatggcgatggacgcggagcggcggcaggcggagctgatcgagcagttctcggcgcaggc 138 ||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||| Sbjct: 148 gatggcgatggacgcggagcggcggcaggcggagctgatcgcgcagttctccgctcaggc 207 Query: 139 ggcggcgctctcttccgctcctcagttggcggcgctcgtgctcgaggccacctcccaccc 198 ||||||||| || ||||| || ||| | || ||||| ||||| ||||||||||||||||| Sbjct: 208 ggcggcgctttcgtccgcgccccagctcgccgcgctggtgcttgaggccacctcccaccc 267 Query: 199 gtcgctctttgccttctccgagctcctcacccttccagccctctccaagctaaagggcac 258 | | ||||| ||||||||||||||||||||||| || |||||||||||||| | ||||| Sbjct: 268 ggccctcttcgccttctccgagctcctcaccctcccggccctctccaagctcactggcac 327 Query: 259 acattacgcctcgtcgctggacctgctccgcctcttcgcctacggcaccctcaaggacta 318 || ||||| ||||| |||||| ||||||| |||||||||||||| ||||| || ||||| Sbjct: 328 gcagtacgcgtcgtcactggacttgctccggctcttcgcctacggtaccctgaatgacta 387 Query: 319 caagagtaattctagcaccctccctgcattgttgcctgatcaagctcggaagctgaagca 378 ||||||||||||| | ||| || ||| |||||||||| || | || ||||| ||||| Sbjct: 388 caagagtaattctggattccttccagcactgttgcctgaccaggtccgaaagctaaagca 447 Query: 379 gctcagtgtgctaactttggctgagtcaaccaaggtacttccatatgatcagctcatgca 438 |||||| ||||||||| |||| |||||||| ||| |||| |||||||||||||||||||| Sbjct: 448 gctcagcgtgctaactctggcagagtcaactaagatactaccatatgatcagctcatgca 507 Query: 439 agagctagacgtttctaatgtgagagaacttgaagatttcctcatcaatgagtgcatgta 498 |||| |||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| Sbjct: 508 agagttagacgtttcaaatgtaagagaactcgaagatttcctaatcaatgagtgcatgta 567 Query: 499 ctcaggtattgtcagaggcaagctggaccaactgcggcggtgctttgaagtacaatttgc 558 || ||||| || |||||||| ||||| || ||| | |||||||||| ||||||||||| Sbjct: 568 ttcgggtatcgttagaggcaaactggatcagctgagaaggtgctttgaggtacaatttgc 627 Query: 559 agctggaagggacctcacacctgatcagctaaccaacatgatcgagactttgtctga 615 ||||||||| || || |||||||||||||||| |||||||| |||||||||||||| Sbjct: 628 agctggaagagatcttacacctgatcagctaaagaacatgatagagactttgtctga 684
>gb|BT017720.1| Zea mays clone EL01N0447C01.c mRNA sequence Length = 1191 Score = 345 bits (174), Expect = 1e-91 Identities = 366/430 (85%) Strand = Plus / Plus Query: 176 gtgctcgaggccacctcccacccgtcgctctttgccttctccgagctcctcacccttcca 235 |||||||||||||||||||||||| | ||||| |||||||||||||||||| |||| || Sbjct: 41 gtgctcgaggccacctcccacccggccctcttcgccttctccgagctcctcgccctcccg 100 Query: 236 gccctctccaagctaaagggcacacattacgcctcgtcgctggacctgctccgcctcttc 295 |||||||||| |||| ||||| || ||| | || || |||||| ||||||| |||||| Sbjct: 101 gccctctccatgctagctggcactcagtactcgtcttcactggacttgctccggctcttc 160 Query: 296 gcctacggcaccctcaaggactacaagagtaattctagcaccctccctgcattgttgcct 355 ||||| |||||| | |||||||| |||| |||||| | |||| || ||||||||||| Sbjct: 161 gcctatggcaccttgaaggactataagaataattcaggatcccttccagcattgttgccg 220 Query: 356 gatcaagctcggaagctgaagcagctcagtgtgctaactttggctgagtcaaccaaggta 415 ||||| | || ||||| ||||| ||||||||||||||| |||| |||||||| ||| || Sbjct: 221 gatcaggtccgaaagctaaagcaactcagtgtgctaactctggcagagtcaactaagata 280 Query: 416 cttccatatgatcagctcatgcaagagctagacgtttctaatgtgagagaacttgaagat 475 || |||||||||||||||||||||||| | || ||||| || || |||||||| |||||| Sbjct: 281 ctaccatatgatcagctcatgcaagagttggatgtttccaacgtaagagaactcgaagat 340 Query: 476 ttcctcatcaatgagtgcatgtactcaggtattgtcagaggcaagctggaccaactgcgg 535 || || ||||||||||||||||| |||||||| ||||||||||| ||||| || ||| | Sbjct: 341 tttctaatcaatgagtgcatgtattcaggtatcgtcagaggcaaactggatcagctgaga 400 Query: 536 cggtgctttgaagtacaatttgcagctggaagggacctcacacctgatcagctaaccaac 595 | ||||||||||||||||||||||||||||| || || |||||||||||||||| |||| Sbjct: 401 agatgctttgaagtacaatttgcagctggaagagatcttacacctgatcagctaaacaac 460 Query: 596 atgatcgaga 605 ||||| |||| Sbjct: 461 atgatagaga 470
>gb|AY105700.1| Zea mays PCO067508 mRNA sequence Length = 710 Score = 295 bits (149), Expect = 9e-77 Identities = 372/444 (83%), Gaps = 3/444 (0%) Strand = Plus / Plus Query: 65 tcgtcgccggcagagatggcgatggacgcggagcggcggcaggcggagctgatcgagcag 124 |||||||||| |||||||| |||||||||||||||||||| ||||||||||||| |||| Sbjct: 38 tcgtcgccgg--gagatggccatggacgcggagcggcggcaagcggagctgatcgcgcag 95 Query: 125 ttctcggcgcaggcggcggcgctctcttccgctcctcagttggcggcgctcgtgctcgag 184 ||||| | ||||||| ||| || || ||||| | ||| | || || || ||||||||| Sbjct: 96 ttctcctctcaggcggtggctctttcgtccgcgcagcagctcgccgctctggtgctcgag 155 Query: 185 gccacctcccacccgtcgctctttgccttctccgagctcctcacccttccagccctctcc 244 ||||||||||||||| | ||||| |||||||||||||||||| |||| || ||||||||| Sbjct: 156 gccacctcccacccggccctcttcgccttctccgagctcctcgccctcccggccctctcc 215 Query: 245 aagctaaagggcacacattacgcctcgtcgctggacctgctccgcctcttcgcctacggc 304 | ||| ||||| || ||| | || || |||||| ||||||| ||||||||||| ||| Sbjct: 216 atgctcgctggcactcagtactcgtcttcactggacttgctccggctcttcgcctatggc 275 Query: 305 accctcaaggactacaagagtaattctagcaccctccctgcattgttgcctgatcaagct 364 ||| | |||||||| |||| |||||| | |||| || ||||||||||||||||| | Sbjct: 276 accttgaaggactataagaataattcgggatcccttccagcattgttgcctgatcaggtc 335 Query: 365 cggaagctgaagcagctcagtgtgctaactttggctgagtcaaccaaggtacttccatat 424 || ||||| ||||| ||||||||||||||| |||| |||||||| ||| |||| |||||| Sbjct: 336 cgaaagctaaagcaactcagtgtgctaactctggcagagtcaactaagatactaccatat 395 Query: 425 gatcagctcatgcaagagctagacgtttctaatgtgagagaacttgaagatttcctcatc 484 |||||||||||||||||| | || ||||| || || |||||||| |||||||| || ||| Sbjct: 396 gatcagctcatgcaagagttggatgtttccaacgtaagagaactcgaagattttctaatc 455 Query: 485 aatgagt-gcatgtactcaggtat 507 ||||||| ||||||| |||||||| Sbjct: 456 aatgagtggcatgtattcaggtat 479
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 208 bits (105), Expect = 2e-50 Identities = 164/183 (89%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 68 tcgccggcagagatggcgatggacgcggagcggcggcaggcggagctgatcgagcagttc 127 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18204276 tcgccggcggcgatggcgatggacgcggagcggcggcaggcggagctgatcgagcagttc 18204217 Query: 128 tcggcgcaggcggcggcgct---ctcttccgctcctcagttggcggcgctcgtgctcgag 184 || ||||||||||| || || ||| || || || ||| |||||||||||||||||||| Sbjct: 18204216 tccgcgcaggcggccgccctctcctcgtcggcgccgcagctggcggcgctcgtgctcgag 18204157 Query: 185 gccacctcccacccgtcgctctttgccttctccgagctcctcacccttccagccctctcc 244 ||||||||||||||| | ||||| |||||||||||||||||| |||| || ||||||||| Sbjct: 18204156 gccacctcccacccggccctcttcgccttctccgagctcctctccctccccgccctctcc 18204097 Query: 245 aag 247 ||| Sbjct: 18204096 aag 18204094 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 324 gtaattctagcaccctccctgcattgttgcctgatcaagctcggaagctgaagcagctca 383 |||||||| ||| |||||||||||||| |||||||||| |||||||||||||| |||| Sbjct: 18203288 gtaattctggcaatctccctgcattgttacctgatcaagtccggaagctgaagcaactca 18203229 Query: 384 gtgtgctaactttggctgagtcaaccaaggt 414 | ||||||||||||||||||||||||||||| Sbjct: 18203228 gcgtgctaactttggctgagtcaaccaaggt 18203198 Score = 101 bits (51), Expect = 3e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 419 ccatatgatcagctcatgcaagagctagacgtttctaatgtgagagaacttgaagatttc 478 ||||||||||| ||||||||||| | || ||||| ||||| |||||||| ||||||||| Sbjct: 18202460 ccatatgatcaactcatgcaagaattggatgtttccaatgtaagagaactcgaagatttc 18202401 Query: 479 ctcatcaatgagtgcatgtactc 501 ||||||||||||||||||||||| Sbjct: 18202400 ctcatcaatgagtgcatgtactc 18202378 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 269 tcgtcgctggacctgctccgcctcttcgcctacggcaccctcaaggactacaagagtaa 327 ||||| |||||| ||||||||||||||||||| || || | ||||||||||||||||| Sbjct: 18203940 tcgtctctggacgtgctccgcctcttcgcctatgggacattgaaggactacaagagtaa 18203882 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 548 gtacaatttgcagctggaagggacctcacacctgatcagctaaccaacatgatcgagact 607 |||||||||||| |||||||||| || |||||||||||||| | ||| ||||| || || Sbjct: 18202034 gtacaatttgcaactggaagggatcttacacctgatcagctgaacaatatgatagataca 18201975 Query: 608 ttgtctgact 617 || ||||||| Sbjct: 18201974 ttatctgact 18201965
>dbj|AP004051.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1218_C12 Length = 105861 Score = 208 bits (105), Expect = 2e-50 Identities = 164/183 (89%), Gaps = 3/183 (1%) Strand = Plus / Minus Query: 68 tcgccggcagagatggcgatggacgcggagcggcggcaggcggagctgatcgagcagttc 127 |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7519 tcgccggcggcgatggcgatggacgcggagcggcggcaggcggagctgatcgagcagttc 7460 Query: 128 tcggcgcaggcggcggcgct---ctcttccgctcctcagttggcggcgctcgtgctcgag 184 || ||||||||||| || || ||| || || || ||| |||||||||||||||||||| Sbjct: 7459 tccgcgcaggcggccgccctctcctcgtcggcgccgcagctggcggcgctcgtgctcgag 7400 Query: 185 gccacctcccacccgtcgctctttgccttctccgagctcctcacccttccagccctctcc 244 ||||||||||||||| | ||||| |||||||||||||||||| |||| || ||||||||| Sbjct: 7399 gccacctcccacccggccctcttcgccttctccgagctcctctccctccccgccctctcc 7340 Query: 245 aag 247 ||| Sbjct: 7339 aag 7337 Score = 117 bits (59), Expect = 4e-23 Identities = 83/91 (91%) Strand = Plus / Minus Query: 324 gtaattctagcaccctccctgcattgttgcctgatcaagctcggaagctgaagcagctca 383 |||||||| ||| |||||||||||||| |||||||||| |||||||||||||| |||| Sbjct: 6531 gtaattctggcaatctccctgcattgttacctgatcaagtccggaagctgaagcaactca 6472 Query: 384 gtgtgctaactttggctgagtcaaccaaggt 414 | ||||||||||||||||||||||||||||| Sbjct: 6471 gcgtgctaactttggctgagtcaaccaaggt 6441 Score = 101 bits (51), Expect = 3e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 419 ccatatgatcagctcatgcaagagctagacgtttctaatgtgagagaacttgaagatttc 478 ||||||||||| ||||||||||| | || ||||| ||||| |||||||| ||||||||| Sbjct: 5703 ccatatgatcaactcatgcaagaattggatgtttccaatgtaagagaactcgaagatttc 5644 Query: 479 ctcatcaatgagtgcatgtactc 501 ||||||||||||||||||||||| Sbjct: 5643 ctcatcaatgagtgcatgtactc 5621 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 269 tcgtcgctggacctgctccgcctcttcgcctacggcaccctcaaggactacaagagtaa 327 ||||| |||||| ||||||||||||||||||| || || | ||||||||||||||||| Sbjct: 7183 tcgtctctggacgtgctccgcctcttcgcctatgggacattgaaggactacaagagtaa 7125 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 548 gtacaatttgcagctggaagggacctcacacctgatcagctaaccaacatgatcgagact 607 |||||||||||| |||||||||| || |||||||||||||| | ||| ||||| || || Sbjct: 5277 gtacaatttgcaactggaagggatcttacacctgatcagctgaacaatatgatagataca 5218 Query: 608 ttgtctgact 617 || ||||||| Sbjct: 5217 ttatctgact 5208
>dbj|AK058214.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D11, full insert sequence Length = 710 Score = 153 bits (77), Expect = 8e-34 Identities = 137/157 (87%) Strand = Plus / Plus Query: 461 agagaacttgaagatttcctcatcaatgagtgcatgtactcaggtattgtcagaggcaag 520 |||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 4 agagaactcgaagatttcctcatcaatgagtgcatgtactcgggtattgtcaggggcaaa 63 Query: 521 ctggaccaactgcggcggtgctttgaagtacaatttgcagctggaagggacctcacacct 580 |||| || |||||| |||| ||||| |||||||||||| |||||||||| || |||||| Sbjct: 64 ttggatcagctgcggaggtgttttgaggtacaatttgcaactggaagggatcttacacct 123 Query: 581 gatcagctaaccaacatgatcgagactttgtctgact 617 |||||||| | ||| ||||| || || || ||||||| Sbjct: 124 gatcagctgaacaatatgatagatacattatctgact 160
>dbj|AP005190.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0477A12 Length = 138141 Score = 101 bits (51), Expect = 3e-18 Identities = 75/83 (90%) Strand = Plus / Minus Query: 419 ccatatgatcagctcatgcaagagctagacgtttctaatgtgagagaacttgaagatttc 478 ||||||||||| ||||||||||| | || ||||| ||||| |||||||| ||||||||| Sbjct: 137766 ccatatgatcaactcatgcaagaattggatgtttccaatgtaagagaactcgaagatttc 137707 Query: 479 ctcatcaatgagtgcatgtactc 501 ||||||||||||||||||||||| Sbjct: 137706 ctcatcaatgagtgcatgtactc 137684 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 548 gtacaatttgcagctggaagggacctcacacctgatcagctaaccaacatgatcgagact 607 |||||||||||| |||||||||| || |||||||||||||| | ||| ||||| || || Sbjct: 137340 gtacaatttgcaactggaagggatcttacacctgatcagctgaacaatatgatagataca 137281 Query: 608 ttgtctgact 617 || ||||||| Sbjct: 137280 ttatctgact 137271
>gb|AY107395.1| Zea mays PCO067507 mRNA sequence Length = 728 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 575 acacctgatcagctaaccaacatgatcgaga 605 |||||||||||||||| ||||||||| |||| Sbjct: 11 acacctgatcagctaaacaacatgatagaga 41
>ref|XM_417466.1| PREDICTED: Gallus gallus similar to KIAA1755 protein (LOC419294), mRNA Length = 2436 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagctg 115 |||||||||||||||||||||| Sbjct: 1893 ggagcggcggcaggcggagctg 1914
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Plus Query: 121 gcagttctcggcgcaggcggcggcgctctc 150 |||| |||||||||||||||||||| |||| Sbjct: 4938 gcagatctcggcgcaggcggcggcggtctc 4967
>emb|AL672085.6| Mouse DNA sequence from clone RP23-2E6 on chromosome X, complete sequence Length = 56345 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 cgccggcagagatggcgatgga 90 |||||||||||||||||||||| Sbjct: 30489 cgccggcagagatggcgatgga 30510
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 219 agctcctcacccttccagccc 239 ||||||||||||||||||||| Sbjct: 172480 agctcctcacccttccagccc 172460
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 459 tgagagaacttgaagatttcc 479 ||||||||||||||||||||| Sbjct: 1994380 tgagagaacttgaagatttcc 1994400 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 tgagagaacttgaagatttc 478 |||||||||||||||||||| Sbjct: 246683 tgagagaacttgaagatttc 246702
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 gagctgatcgagcagttctcggcgc 134 |||||||||||||||||| |||||| Sbjct: 1979773 gagctgatcgagcagttcgcggcgc 1979749 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 ggagctgatcgagcagttct 128 |||||||||||||||||||| Sbjct: 3506876 ggagctgatcgagcagttct 3506895
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 gagctgatcgagcagttctcggcgc 134 |||||||||||||||||| |||||| Sbjct: 1452464 gagctgatcgagcagttcgcggcgc 1452488 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ggagctgatcgagcagttct 128 |||||||||||||||||||| Sbjct: 315535 ggagctgatcgagcagttct 315516
>gb|AC122551.7| Mus musculus chromosome 16, clone RP24-480I8, complete sequence Length = 190760 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 400 tgagtcaaccaaggtacttccatat 424 |||||||| |||||||||||||||| Sbjct: 112567 tgagtcaagcaaggtacttccatat 112543
>ref|XM_569926.1| Cryptococcus neoformans var. neoformans JEC21 Arylsulfatase precursor (CNC06820) partial mRNA Length = 1918 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 459 tgagagaacttgaagatttcc 479 ||||||||||||||||||||| Sbjct: 1697 tgagagaacttgaagatttcc 1677
>emb|BX008451.1|CNS08EON Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA13DF02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 845 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 321 agagtaattctagcaccctcc 341 ||||||||||||||||||||| Sbjct: 373 agagtaattctagcaccctcc 353
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 gagctgatcgagcagttctcggcgc 134 |||||||||||||||||| |||||| Sbjct: 1339659 gagctgatcgagcagttcgcggcgc 1339683 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 ggagctgatcgagcagttct 128 |||||||||||||||||||| Sbjct: 90249 ggagctgatcgagcagttct 90230
>gb|AC008091.6|AC008091 Drosophila melanogaster, chromosome 3R, region 93F-93F, BAC clone BACR08K01, complete sequence Length = 175781 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cttccgctcctcagttggcggcgct 174 |||||||||| |||||||||||||| Sbjct: 85137 cttccgctccacagttggcggcgct 85161
>gb|AC006460.4| Homo sapiens BAC clone RP11-284E5 from 2, complete sequence Length = 193015 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 466 acttgaagatttcctcatcaa 486 ||||||||||||||||||||| Sbjct: 173216 acttgaagatttcctcatcaa 173196
>emb|BX088644.9| Zebrafish DNA sequence from clone CH211-157L15 in linkage group 20, complete sequence Length = 175570 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 cttctccgagctcctcaccct 231 ||||||||||||||||||||| Sbjct: 133938 cttctccgagctcctcaccct 133958
>gb|AE003736.3| Drosophila melanogaster chromosome 3R, section 74 of 118 of the complete sequence Length = 235928 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 150 cttccgctcctcagttggcggcgct 174 |||||||||| |||||||||||||| Sbjct: 225445 cttccgctccacagttggcggcgct 225469
>gb|AY775058.1| Homo sapiens misshapen/NIKs-related kinase isoform beta (MINK) mRNA, complete cds, alternatively spliced Length = 3939 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1320 ggagcggcggcaggcggagc 1339
>gb|AY695181.1| Tringa melanoleuca beta-fibrinogen (FGB) gene, intron 7 Length = 845 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ggaagctgaagcagctcagt 385 |||||||||||||||||||| Sbjct: 669 ggaagctgaagcagctcagt 650
>gb|AC111093.10| Mus musculus chromosome 3, clone RP23-170E22, complete sequence Length = 201202 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 attgtcagaggcaagctgga 525 |||||||||||||||||||| Sbjct: 24359 attgtcagaggcaagctgga 24340
>ref|XM_469560.1| Oryza sativa (japonica cultivar-group), mRNA Length = 399 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 cggagcggcggcaggcggag 112 |||||||||||||||||||| Sbjct: 90 cggagcggcggcaggcggag 109
>gb|DQ232586.1| Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequence Length = 114045 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 cggcgcaggcggcggcgctc 148 |||||||||||||||||||| Sbjct: 21156 cggcgcaggcggcggcgctc 21175
>ref|NM_001024937.1| Homo sapiens misshapen-like kinase 1 (zebrafish) (MINK1), transcript variant 4, mRNA Length = 4929 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1516 ggagcggcggcaggcggagc 1535
>ref|NM_015716.2| Homo sapiens misshapen-like kinase 1 (zebrafish) (MINK1), transcript variant 1, mRNA Length = 4878 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1516 ggagcggcggcaggcggagc 1535
>ref|NM_170663.2| Homo sapiens misshapen-like kinase 1 (zebrafish) (MINK1), transcript variant 2, mRNA Length = 4902 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1516 ggagcggcggcaggcggagc 1535
>ref|NM_153827.2| Homo sapiens misshapen-like kinase 1 (zebrafish) (MINK1), transcript variant 3, mRNA Length = 4989 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1516 ggagcggcggcaggcggagc 1535
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cggagcggcggcaggcggag 112 |||||||||||||||||||| Sbjct: 28713404 cggagcggcggcaggcggag 28713385 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ctcggcgcaggcggcggcgc 146 |||||||||||||||||||| Sbjct: 25062446 ctcggcgcaggcggcggcgc 25062427
>ref|XM_569393.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNC00860) partial mRNA Length = 633 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 459 tgagagaacttgaagatttc 478 |||||||||||||||||||| Sbjct: 458 tgagagaacttgaagatttc 439
>gb|AC121937.2| Mus musculus BAC clone RP24-207M20 from 9, complete sequence Length = 169399 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 tggctgagtcaaccaaggta 415 |||||||||||||||||||| Sbjct: 73382 tggctgagtcaaccaaggta 73363
>emb|AL356795.16| Human DNA sequence from clone RP11-298H1 on chromosome 10 Contains ESTs and GSSs, complete sequence Length = 72137 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 tcagtgtgctaactttggct 400 |||||||||||||||||||| Sbjct: 6749 tcagtgtgctaactttggct 6730
>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete sequence Length = 170020 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ctcggcgcaggcggcggcgc 146 |||||||||||||||||||| Sbjct: 94253 ctcggcgcaggcggcggcgc 94234
>emb|BX842649.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 4/11 Length = 349697 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 115 gatcgagcagttctcggcgcaggc 138 |||||||||| ||||||||||||| Sbjct: 331065 gatcgagcagatctcggcgcaggc 331088
>emb|BX901883.5| Zebrafish DNA sequence from clone DKEY-151M15 in linkage group 3, complete sequence Length = 241961 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 taaagggcacacattacgcc 268 |||||||||||||||||||| Sbjct: 54454 taaagggcacacattacgcc 54435
>gb|BC034673.1| Homo sapiens misshapen-like kinase 1 (zebrafish), transcript variant 3, mRNA (cDNA clone MGC:21111 IMAGE:4384442), complete cds Length = 5014 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1516 ggagcggcggcaggcggagc 1535
>gb|AC016924.19| Homo sapiens 3 BAC RP11-205A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51001 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tccagccctctccaagctaa 251 |||||||||||||||||||| Sbjct: 19844 tccagccctctccaagctaa 19825
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic sequence, complete sequence Length = 138826 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ctcctcacccttccagccctctcc 244 |||||| ||||||||||||||||| Sbjct: 48024 ctcctctcccttccagccctctcc 48001
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 gcaggcggagctgatcgagc 122 |||||||||||||||||||| Sbjct: 946046 gcaggcggagctgatcgagc 946027
>gb|AC130842.5| Mus musculus BAC clone RP24-448N19 from chromosome 3, complete sequence Length = 184249 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 506 attgtcagaggcaagctgga 525 |||||||||||||||||||| Sbjct: 29419 attgtcagaggcaagctgga 29438
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ctcctcacccttccagccctctcc 244 |||||| ||||||||||||||||| Sbjct: 6588814 ctcctctcccttccagccctctcc 6588791
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tcggcgcaggcggcggcgct 147 |||||||||||||||||||| Sbjct: 10640617 tcggcgcaggcggcggcgct 10640636
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cggagcggcggcaggcggag 112 |||||||||||||||||||| Sbjct: 28804728 cggagcggcggcaggcggag 28804709 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 ctcggcgcaggcggcggcgc 146 |||||||||||||||||||| Sbjct: 25153755 ctcggcgcaggcggcggcgc 25153736
>gb|BC094686.1| Homo sapiens cDNA clone IMAGE:30389401, containing frame-shift errors Length = 5060 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1607 ggagcggcggcaggcggagc 1626
>gb|AC109333.28| Homo sapiens chromosome 17, clone RP11-115H24, complete sequence Length = 181825 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 105115 ggagcggcggcaggcggagc 105134
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 cggagcggcggcaggcggag 112 |||||||||||||||||||| Sbjct: 20385 cggagcggcggcaggcggag 20366
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0057I13 Length = 156330 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 tcggcgcaggcggcggcgct 147 |||||||||||||||||||| Sbjct: 92929 tcggcgcaggcggcggcgct 92948
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 agctgatcgagcagttctcggcgc 134 ||||||| |||||||||||||||| Sbjct: 2825731 agctgatggagcagttctcggcgc 2825708
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 caggcggagctgatcgagcagttc 127 |||||||||||||||||| ||||| Sbjct: 5369855 caggcggagctgatcgagaagttc 5369832
>ref|NM_210376.1| Eremothecium gossypii AER164Cp (AER164C), mRNA Length = 1938 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 gcaggcggagctgatcgagc 122 |||||||||||||||||||| Sbjct: 759 gcaggcggagctgatcgagc 778
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 521 ctggaccaactgcggcggtgcttt 544 ||||| |||||||||||||||||| Sbjct: 4812900 ctggaacaactgcggcggtgcttt 4812877
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ctcctcacccttccagccctctcc 244 |||||| ||||||||||||||||| Sbjct: 6655281 ctcctctcccttccagccctctcc 6655258
>dbj|AP005638.2| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-61B13, complete sequence Length = 83280 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 tactcaggtattgtcagagg 516 |||||||||||||||||||| Sbjct: 8039 tactcaggtattgtcagagg 8058
>dbj|AB209450.1| Homo sapiens mRNA for misshapen/NIK-related kinase isoform 2 variant protein Length = 5483 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1496 ggagcggcggcaggcggagc 1515
>emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on chromosome 2, complete sequence Length = 181419 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ctcctcacccttccagccctctcc 244 |||||| ||||||||||||||||| Sbjct: 160109 ctcctctcccttccagccctctcc 160086
>emb|AL157418.1|HSM802420 Homo sapiens mRNA; cDNA DKFZp761K18121 (from clone DKFZp761K18121) Length = 4590 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 908 ggagcggcggcaggcggagc 927
>dbj|AB035698.1| Homo sapiens mRNA for Misshapen/NIK-related kinase MINK-1, complete cds Length = 3888 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1320 ggagcggcggcaggcggagc 1339
>dbj|AB041926.1| Homo sapiens mRNA for GCK family kinase MINK-2, complete cds Length = 4863 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ggagcggcggcaggcggagc 113 |||||||||||||||||||| Sbjct: 1504 ggagcggcggcaggcggagc 1523 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,506,998 Number of Sequences: 3902068 Number of extensions: 4506998 Number of successful extensions: 124362 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123363 Number of HSP's gapped (non-prelim): 995 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)