ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25e23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK070912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
2dbj|AK099965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
7emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb... 82 2e-12
8emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 82 2e-12
9gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome... 46 0.13
10gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete ... 46 0.13
11gb|CP000264.1| Jannaschia sp. CCS1, complete genome 46 0.13
12gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 44 0.53
13ref|XM_324384.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
14ref|XM_951243.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.1
15gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome... 42 2.1
16emb|BX511082.3| Zebrafish DNA sequence from clone DKEY-7J20 in l... 42 2.1
17gb|AC023403.9| Homo sapiens chromosome 8, clone RP11-563N12, com... 42 2.1
18gb|AC107956.8| Homo sapiens chromosome 11, clone RP11-452G18, co... 42 2.1
19dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 2.1
20emb|BX842599.1| Neurospora crassa DNA linkage group II BAC clone... 42 2.1
21gb|AC003690.1|AC003690 Human Chromosome 11 pac pDJ169p3, complet... 42 2.1
22gb|AC153147.7| Mus musculus BAC clone RP23-205D14 from chromosom... 40 8.3
23gb|AC005220.1| Homo sapiens chromosome 20, BAC clone 99 (LBNL H8... 40 8.3
24gb|AC162291.13| Mus musculus chromosome 18, clone RP23-264B14, c... 40 8.3
25gb|AY940168.1| Cyanophage P-SSM4, complete genome 40 8.3
26emb|AL136990.15| Human DNA sequence from clone RP11-15D15 on chr... 40 8.3
27emb|AL596204.8| Mouse DNA sequence from clone RP23-180B18 on chr... 40 8.3
28gb|BC068433.1| Danio rerio sortilin 1, mRNA (cDNA clone MGC:8595... 40 8.3
29ref|NM_213230.1| Danio rerio sortilin 1 (sort1), mRNA 40 8.3
30gb|AC060799.6| Homo sapiens chromosome 11, clone RP11-89D4, comp... 40 8.3
31dbj|AK031963.1| Mus musculus adult male medulla oblongata cDNA, ... 40 8.3
32gb|AC084020.17|AC084020 Mus musculus 11 BAC RP23-301I12 (Roswell... 40 8.3
33dbj|AB062946.1| Macaca fascicularis brain cDNA clone:QmoA-10458,... 40 8.3
34dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
35emb|Z66246.1|HS84E7F H.sapiens CpG island DNA genomic Mse1 fragm... 40 8.3
36gb|AC140442.4| Mus musculus BAC clone RP24-106P1 from 12, comple... 40 8.3
37dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.3
38emb|AL626805.14| Mouse DNA sequence from clone RP23-118K16 on ch... 40 8.3
39gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome... 40 8.3 
>dbj|AK070912.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064I01, full
           insert sequence
          Length = 1672

 Score =  204 bits (103), Expect = 2e-49
 Identities = 203/236 (86%), Gaps = 4/236 (1%)
 Strand = Plus / Plus

                                                                       
Query: 373 gacctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggtcaga 432
           |||||||||||||||||||| |||||||| |||||||| || |||||||| ||||| |||
Sbjct: 229 gacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggttaga 288

                                                                       
Query: 433 ggcgatggggagatccttagccaagtgattgcttcccaa----atttgcttgtgaaatgg 488
           |||||||| |||||||| ||||| ||| |  ||||||||    |||| || ||||  |||
Sbjct: 289 ggcgatggcgagatcctaagccaggtggtatcttcccaagaagatttactcgtgaggtgg 348

                                                                       
Query: 489 ggcggtgttgctcctaagatggccgaagaagctcatgctcttgcaattgatcaggttgtt 548
           || || || ||||| ||||||||||| ||||||||| ||||||| |||||||||||||||
Sbjct: 349 ggaggcgtcgctccgaagatggccgaggaagctcattctcttgcgattgatcaggttgtt 408

                                                                   
Query: 549 cagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtggctgt 604
           ||||||||||| ||||| |||||||||||||| | ||||||||| || ||||||||
Sbjct: 409 cagaaagcacttgatgatgcaaatgtgtcagaaaatgatctttcagcagtggctgt 464
to top
>dbj|AK099965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126M09, full
           insert sequence
          Length = 1718

 Score =  139 bits (70), Expect = 1e-29
 Identities = 152/179 (84%), Gaps = 4/179 (2%)
 Strand = Plus / Plus

                                                                       
Query: 430 agaggcgatggggagatccttagccaagtgattgcttcccaa----atttgcttgtgaaa 485
           ||||||||||| |||||||| ||||| ||| |  ||||||||    |||| || ||||  
Sbjct: 424 agaggcgatggcgagatcctaagccaggtggtatcttcccaagaagatttactcgtgagg 483

                                                                       
Query: 486 tggggcggtgttgctcctaagatggccgaagaagctcatgctcttgcaattgatcaggtt 545
           ||||| || || ||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 484 tggggaggcgtcgctccgaagatggccgaggaagctcattctcttgcgattgatcaggtt 543

                                                                      
Query: 546 gttcagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtggctgt 604
           |||||||||||||| ||||| |||||||||||||| | ||||||||| || ||||||||
Sbjct: 544 gttcagaaagcacttgatgatgcaaatgtgtcagaaaatgatctttcagcagtggctgt 602



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 373 gacctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggt 428
           |||||||||||||||||||| |||||||| |||||||| || |||||||| |||||
Sbjct: 248 gacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggt 303
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 540      caggttgttcagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtg 599
                |||||||||||||||||||| ||||| |||||||||||||| | ||||||||| || |||
Sbjct: 17971804 caggttgttcagaaagcacttgatgatgcaaatgtgtcagaaaatgatctttcagcagtg 17971745

                     
Query: 600      gctgt 604
                |||||
Sbjct: 17971744 gctgt 17971740



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 373      gacctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggt 428
                |||||||||||||||||||| |||||||| |||||||| || |||||||| |||||
Sbjct: 17972301 gacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggt 17972246



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                                
Query: 498      gctcctaagatggccgaagaagctcatgctcttgcaattgatcaggtt 545
                ||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 17971927 gctccgaagatggccgaggaagctcattctcttgcgattgatcaggtt 17971880
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 540      caggttgttcagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtg 599
                |||||||| ||||||||||| ||| | |||||||||||||| |||||||||||||| |||
Sbjct: 10815907 caggttgtccagaaagcacttgataatgcaaatgtgtcagaaagtgatctttctgcagtg 10815848

                     
Query: 600      gctgt 604
                |||||
Sbjct: 10815847 gctgt 10815843



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 374      acctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggt 428
                ||||||||||||||||||| |||||||| |||||||| || |||||||| |||||
Sbjct: 10816421 acctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggt 10816367



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 108      tcagctccttctttggtgac 127
                ||||||||||||||||||||
Sbjct: 12146980 tcagctccttctttggtgac 12146961
to top
>dbj|AP003140.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0025P13
          Length = 133242

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                        
Query: 540  caggttgttcagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtg 599
            |||||||| ||||||||||| ||| | |||||||||||||| |||||||||||||| |||
Sbjct: 2923 caggttgtccagaaagcacttgataatgcaaatgtgtcagaaagtgatctttctgcagtg 2864

                 
Query: 600  gctgt 604
            |||||
Sbjct: 2863 gctgt 2859



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                   
Query: 374  acctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggt 428
            ||||||||||||||||||| |||||||| |||||||| || |||||||| |||||
Sbjct: 3437 acctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggt 3383
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                            
Query: 540      caggttgttcagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtg 599
                |||||||||||||||||||| ||||| |||||||||||||| | ||||||||| || |||
Sbjct: 17898123 caggttgttcagaaagcacttgatgatgcaaatgtgtcagaaaatgatctttcagcagtg 17898064

                     
Query: 600      gctgt 604
                |||||
Sbjct: 17898063 gctgt 17898059



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                        
Query: 373      gacctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggt 428
                |||||||||||||||||||| |||||||| |||||||| || |||||||| |||||
Sbjct: 17898620 gacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggt 17898565



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                                
Query: 498      gctcctaagatggccgaagaagctcatgctcttgcaattgatcaggtt 545
                ||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 17898246 gctccgaagatggccgaggaagctcattctcttgcgattgatcaggtt 17898199
to top
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 124294

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                          
Query: 540    caggttgttcagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtg 599
              |||||||||||||||||||| ||||| |||||||||||||| | ||||||||| || |||
Sbjct: 113888 caggttgttcagaaagcacttgatgatgcaaatgtgtcagaaaatgatctttcagcagtg 113947

                   
Query: 600    gctgt 604
              |||||
Sbjct: 113948 gctgt 113952



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                      
Query: 373    gacctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggt 428
              |||||||||||||||||||| |||||||| |||||||| || |||||||| |||||
Sbjct: 113391 gacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggt 113446



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 498    gctcctaagatggccgaagaagctcatgctcttgcaattgatcaggtt 545
              ||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 113765 gctccgaagatggccgaggaagctcattctcttgcgattgatcaggtt 113812
to top
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                         
Query: 540   caggttgttcagaaagcactcgatgacgcaaatgtgtcagagagtgatctttctgctgtg 599
             |||||||||||||||||||| ||||| |||||||||||||| | ||||||||| || |||
Sbjct: 26752 caggttgttcagaaagcacttgatgatgcaaatgtgtcagaaaatgatctttcagcagtg 26811

                  
Query: 600   gctgt 604
             |||||
Sbjct: 26812 gctgt 26816



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                     
Query: 373   gacctcctcatgctcggcattgagaccagttgcgacgatactgccgccgctgtggt 428
             |||||||||||||||||||| |||||||| |||||||| || |||||||| |||||
Sbjct: 26255 gacctcctcatgctcggcatcgagaccagctgcgacgacaccgccgccgccgtggt 26310



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 498   gctcctaagatggccgaagaagctcatgctcttgcaattgatcaggtt 545
             ||||| ||||||||||| ||||||||| ||||||| ||||||||||||
Sbjct: 26629 gctccgaagatggccgaggaagctcattctcttgcgattgatcaggtt 26676
to top
>gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome 5, complete sequence
          Length = 224181

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 20    tccctcctcctgcctccacggacctcc 46
             |||||| ||||||||||||||||||||
Sbjct: 16501 tccctcttcctgcctccacggacctcc 16475
to top
>gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete sequence
          Length = 206570

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 20     tccctcctcctgcctccacggacctcc 46
              |||||| ||||||||||||||||||||
Sbjct: 145404 tccctcttcctgcctccacggacctcc 145430
to top
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                      
Query: 385     ctcggcattgagaccagttgcgacgatactgccgccgct 423
               ||||| ||||||| |||||||||||| || |||||||||
Sbjct: 4186443 ctcggaattgagagcagttgcgacgacaccgccgccgct 4186405
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 399     cagttgcgacgatactgccgccgctgtggt 428
               ||||||||||||||| |||||||| |||||
Sbjct: 4069864 cagttgcgacgataccgccgccgcagtggt 4069893
to top
>ref|XM_324384.1| Neurospora crassa OR74A hypothetical protein (NCU05028.1) partial
            mRNA
          Length = 2739

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 285  cctcctcgcttctgcttcttc 305
            |||||||||||||||||||||
Sbjct: 2289 cctcctcgcttctgcttcttc 2269
to top
>ref|XM_951243.1| Neurospora crassa OR74A hypothetical protein (NCU05028.1) partial
            mRNA
          Length = 2739

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 285  cctcctcgcttctgcttcttc 305
            |||||||||||||||||||||
Sbjct: 2289 cctcctcgcttctgcttcttc 2269
to top
>gb|AC137511.3| Mus musculus BAC clone RP24-313I8 from chromosome 5, complete sequence
          Length = 168197

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   gctccttctttggtgactttc 131
             |||||||||||||||||||||
Sbjct: 72538 gctccttctttggtgactttc 72518
to top
>emb|BX511082.3| Zebrafish DNA sequence from clone DKEY-7J20 in linkage group 9,
             complete sequence
          Length = 101163

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 262   tctcaccatccacttctacgc 282
             |||||||||||||||||||||
Sbjct: 75503 tctcaccatccacttctacgc 75483
to top
>gb|AC023403.9| Homo sapiens chromosome 8, clone RP11-563N12, complete sequence
          Length = 193461

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 134    ctcaggctgcagggtcaccca 154
              |||||||||||||||||||||
Sbjct: 147116 ctcaggctgcagggtcaccca 147136
to top
>gb|AC107956.8| Homo sapiens chromosome 11, clone RP11-452G18, complete sequence
          Length = 188571

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 181    ctcacccttctcccaacctta 201
              |||||||||||||||||||||
Sbjct: 101327 ctcacccttctcccaacctta 101347
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 388     ggcattgagaccagttgcgacgatactgccgcc 420
               ||||||||||| ||||||||||| || ||||||
Sbjct: 3374431 ggcattgagacgagttgcgacgagaccgccgcc 3374463
to top
>emb|BX842599.1| Neurospora crassa DNA linkage group II BAC clone B10A24
          Length = 85694

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 285   cctcctcgcttctgcttcttc 305
             |||||||||||||||||||||
Sbjct: 50968 cctcctcgcttctgcttcttc 50988
to top
>gb|AC003690.1|AC003690 Human Chromosome 11 pac pDJ169p3, complete sequence
          Length = 34052

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   ctcacccttctcccaacctta 201
             |||||||||||||||||||||
Sbjct: 28382 ctcacccttctcccaacctta 28362
to top
>gb|AC153147.7| Mus musculus BAC clone RP23-205D14 from chromosome 12, complete sequence
          Length = 206281

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 268    catccacttctacgcagcctcctc 291
              ||||||||||| ||||||||||||
Sbjct: 127534 catccacttcttcgcagcctcctc 127557
to top
>gb|AC005220.1| Homo sapiens chromosome 20, BAC clone 99 (LBNL H80), complete sequence
          Length = 163196

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   ctcacccttctcccaacctt 200
             ||||||||||||||||||||
Sbjct: 62252 ctcacccttctcccaacctt 62271
to top
>gb|AC162291.13| Mus musculus chromosome 18, clone RP23-264B14, complete sequence
          Length = 198736

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    ctccctcctcctgcctccac 38
             ||||||||||||||||||||
Sbjct: 75016 ctccctcctcctgcctccac 75035
to top
>gb|AY940168.1| Cyanophage P-SSM4, complete genome
          Length = 178249

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    cctcctctgctccatcgaag 61
             ||||||||||||||||||||
Sbjct: 24450 cctcctctgctccatcgaag 24431
to top
>emb|AL136990.15| Human DNA sequence from clone RP11-15D15 on chromosome 20 Contains a
             GSS, complete sequence
          Length = 24747

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    ctccctcctcctgcctccac 38
             ||||||||||||||||||||
Sbjct: 21937 ctccctcctcctgcctccac 21956
to top
>emb|AL596204.8| Mouse DNA sequence from clone RP23-180B18 on chromosome 11 Contains the
              Flcn gene for folliculin, the gene for a novel
              Phospholipase D Active site motif-containing protein, two
              novel genes, the gene for Rho interacting protein 3
              (Rhoip3), the gene (possible pseudogene) for a novel
              protein similar to olfactory receptor proteins and two CpG
              islands, complete sequence
          Length = 205606

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    ctttcccctcaggctgcagg 146
              ||||||||||||||||||||
Sbjct: 152322 ctttcccctcaggctgcagg 152303
to top
>gb|BC068433.1| Danio rerio sortilin 1, mRNA (cDNA clone MGC:85953 IMAGE:6965467),
           complete cds
          Length = 3277

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 tttggtgactttcccctcag 138
           ||||||||||||||||||||
Sbjct: 643 tttggtgactttcccctcag 624
to top
>ref|NM_213230.1| Danio rerio sortilin 1 (sort1), mRNA
          Length = 3247

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 119 tttggtgactttcccctcag 138
           ||||||||||||||||||||
Sbjct: 643 tttggtgactttcccctcag 624
to top
>gb|AC060799.6| Homo sapiens chromosome 11, clone RP11-89D4, complete sequence
          Length = 152164

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   cagctccttctttggtgact 128
             ||||||||||||||||||||
Sbjct: 78622 cagctccttctttggtgact 78641
to top
>dbj|AK031963.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330513E13 product:hypothetical
            protein, full insert sequence
          Length = 3477

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   ctccctcctcctgcctccac 38
            ||||||||||||||||||||
Sbjct: 2968 ctccctcctcctgcctccac 2949
to top
>gb|AC084020.17|AC084020 Mus musculus 11 BAC RP23-301I12 (Roswell Park Cancer Institute Mouse
             BAC Library) complete sequence
          Length = 147670

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   ctttcccctcaggctgcagg 146
             ||||||||||||||||||||
Sbjct: 25010 ctttcccctcaggctgcagg 25029
to top
>dbj|AB062946.1| Macaca fascicularis brain cDNA clone:QmoA-10458, similar to human
           serine/threonine kinase 29 (STK29), mRNA, NM_003957
          Length = 1791

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 cctcaggctgcagggtcacc 152
           ||||||||||||||||||||
Sbjct: 316 cctcaggctgcagggtcacc 335
to top
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1153F04
          Length = 158174

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    tcagctccttctttggtgac 127
              ||||||||||||||||||||
Sbjct: 113920 tcagctccttctttggtgac 113901
to top
>emb|Z66246.1|HS84E7F H.sapiens CpG island DNA genomic Mse1 fragment, clone 84e7, forward
           read cpg84e7.ft1a
          Length = 279

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 cgggccactgcattcctcct 236
           ||||||||||||||||||||
Sbjct: 245 cgggccactgcattcctcct 264
to top
>gb|AC140442.4| Mus musculus BAC clone RP24-106P1 from 12, complete sequence
          Length = 153574

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    ctccctcctcctgcctccac 38
             ||||||||||||||||||||
Sbjct: 32241 ctccctcctcctgcctccac 32222
to top
>dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP13-270P17, complete
              sequence
          Length = 178812

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 582    agtgatctttctgctgtggc 601
              ||||||||||||||||||||
Sbjct: 102803 agtgatctttctgctgtggc 102784
to top
>emb|AL626805.14| Mouse DNA sequence from clone RP23-118K16 on chromosome 4, complete
              sequence
          Length = 134717

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     actccctcctcctgcctcca 37
              ||||||||||||||||||||
Sbjct: 107002 actccctcctcctgcctcca 106983
to top
>gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome 12, complete sequence
          Length = 235086

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ctccctcctcctgcctccac 38
              ||||||||||||||||||||
Sbjct: 201038 ctccctcctcctgcctccac 201019


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,133,278
Number of Sequences: 3902068
Number of extensions: 5133278
Number of successful extensions: 99080
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98859
Number of HSP's gapped (non-prelim): 219
length of query: 608
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 585
effective length of database: 17,143,297,704
effective search space: 10028829156840
effective search space used: 10028829156840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top