ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25e21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_191110.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2403 Score = 414 bits (209), Expect = e-113 Identities = 327/366 (89%), Gaps = 1/366 (0%) Strand = Plus / Plus Query: 2 gtccgtgcattacgtgataccttcccgcctgctanaagcagctggaatcatggcactgag 61 |||||||||||||||||||||||||| |||||| | |||||||| |||||||| || || Sbjct: 1390 gtccgtgcattacgtgataccttcccccctgctcga-gcagctggcatcatggcgctaag 1448 Query: 62 tgtcactagttcgtactacgaaatgacagagattgcaacccgtatactgcctaacattgt 121 |||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| |||| Sbjct: 1449 tgtcactagttcatactatgaaatgacagagattgcaactcgtattctgcctaacgttgt 1508 Query: 122 tgtccttacatttgacccagacagtgatgtgaggaccaaggctttccaggctactgacca 181 |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 1509 tgtcctcacatttgatccagatagtgatgtgaggaccaaggctttccaggctactgatca 1568 Query: 182 attcttgcaaatagcaaaacaacatcatganaagcttaacacaggagacaacagggcagc 241 |||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||| Sbjct: 1569 attcttgcaaatagcaaaacaacatcatgaaaagcttactatgggagacaacagcgcagc 1628 Query: 242 cgaaggtactggtgttcagttaaagcctggaaatgctagtttacttgggtgggccatgag 301 ||||| ||||||| | ||||||||||||||||||||| |||||||||||||||| ||||| Sbjct: 1629 cgaagctactggtatccagttaaagcctggaaatgctggtttacttgggtgggctatgag 1688 Query: 302 ttctattactcagaagggaaaaccgancgaccatggtccagtatctactgcaaatgccag 361 |||| ||||||||||||||||| ||||||||||| || |||| ||||||||| || Sbjct: 1689 ttctcttactcagaagggaaaaggttctgaccatggtccggtttctagtgcaaatgctag 1748 Query: 362 taactc 367 ||||| Sbjct: 1749 caactc 1754
>dbj|AK067401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105B05, full insert sequence Length = 2889 Score = 414 bits (209), Expect = e-113 Identities = 327/366 (89%), Gaps = 1/366 (0%) Strand = Plus / Plus Query: 2 gtccgtgcattacgtgataccttcccgcctgctanaagcagctggaatcatggcactgag 61 |||||||||||||||||||||||||| |||||| | |||||||| |||||||| || || Sbjct: 1695 gtccgtgcattacgtgataccttcccccctgctcga-gcagctggcatcatggcgctaag 1753 Query: 62 tgtcactagttcgtactacgaaatgacagagattgcaacccgtatactgcctaacattgt 121 |||||||||||| ||||| |||||||||||||||||||| ||||| ||||||||| |||| Sbjct: 1754 tgtcactagttcatactatgaaatgacagagattgcaactcgtattctgcctaacgttgt 1813 Query: 122 tgtccttacatttgacccagacagtgatgtgaggaccaaggctttccaggctactgacca 181 |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct: 1814 tgtcctcacatttgatccagatagtgatgtgaggaccaaggctttccaggctactgatca 1873 Query: 182 attcttgcaaatagcaaaacaacatcatganaagcttaacacaggagacaacagggcagc 241 |||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||||| Sbjct: 1874 attcttgcaaatagcaaaacaacatcatgaaaagcttactatgggagacaacagcgcagc 1933 Query: 242 cgaaggtactggtgttcagttaaagcctggaaatgctagtttacttgggtgggccatgag 301 ||||| ||||||| | ||||||||||||||||||||| |||||||||||||||| ||||| Sbjct: 1934 cgaagctactggtatccagttaaagcctggaaatgctggtttacttgggtgggctatgag 1993 Query: 302 ttctattactcagaagggaaaaccgancgaccatggtccagtatctactgcaaatgccag 361 |||| ||||||||||||||||| ||||||||||| || |||| ||||||||| || Sbjct: 1994 ttctcttactcagaagggaaaaggttctgaccatggtccggtttctagtgcaaatgctag 2053 Query: 362 taactc 367 ||||| Sbjct: 2054 caactc 2059
>gb|BT024058.1| Zea mays clone EL01N0440G07 mRNA sequence Length = 1739 Score = 335 bits (169), Expect = 6e-89 Identities = 284/323 (87%) Strand = Plus / Plus Query: 38 agcagctggaatcatggcactgagtgtcactagttcgtactacgaaatgacagagattgc 97 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 550 agcagctggaatcatggcactgagtgtcactagttcatactatgaaatgacagagattgc 609 Query: 98 aacccgtatactgcctaacattgttgtccttacatttgacccagacagtgatgtgaggac 157 ||| || || ||||||||||||||||| || |||||||||||| | |||||||| | || Sbjct: 610 aactcgcatcctgcctaacattgttgtgctcacatttgacccaaatagtgatgtccgaac 669 Query: 158 caaggctttccaggctactgaccaattcttgcaaatagcaaaacaacatcatganaagct 217 |||||||| |||||||| || || ||||||||||||||||||||||| ||||| ||||| Sbjct: 670 gaaggcttttcaggctaccgatcagttcttgcaaatagcaaaacaacaccatgaaaagct 729 Query: 218 taacacaggagacaacagggcagccgaaggtactggtgttcagttaaagcctggaaatgc 277 ||| |||||||||||||| | || ||| ||||||||||| ||||||||||||||||||| Sbjct: 730 taatacaggagacaacagtgtggctgaaagtactggtgttaagttaaagcctggaaatgc 789 Query: 278 tagtttacttgggtgggccatgagttctattactcagaagggaaaaccgancgaccatgg 337 |||||||||||||||||||||||||| |||| || ||||| ||||| ||||||| Sbjct: 790 aggtttacttgggtgggccatgagttctgttacacaaaagggtaaaccttttgaccatgc 849 Query: 338 tccagtatctactgcaaatgcca 360 ||| |||||||||||||||||| Sbjct: 850 cccaatatctactgcaaatgcca 872
>gb|AY104513.1| Zea mays PCO102994 mRNA sequence Length = 905 Score = 202 bits (102), Expect = 6e-49 Identities = 175/200 (87%) Strand = Plus / Plus Query: 161 ggctttccaggctactgaccaattcttgcaaatagcaaaacaacatcatganaagcttaa 220 |||||||||||||||||| || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1 ggctttccaggctactgatcagttcttgcaaatagcaaagcaacaccatgaaaagcttaa 60 Query: 221 cacaggagacaacagggcagccgaaggtactggtgttcagttaaagcctggaaatgctag 280 || ||||||||||||| || ||| ||||||||||| ||||||||||||||||||| | Sbjct: 61 tacgggagacaacagggtggctgaaagtactggtgttaagttaaagcctggaaatgcagg 120 Query: 281 tttacttgggtgggccatgagttctattactcagaagggaaaaccgancgaccatggtcc 340 ||||||||||||||||||||||||| |||| || ||||| ||||| ||||||| || Sbjct: 121 tttacttgggtgggccatgagttctgttacacaaaagggtaaaccttttgaccatgcccc 180 Query: 341 agtatctactgcaaatgcca 360 | |||||||||||||||||| Sbjct: 181 aatatctactgcaaatgcca 200
>gb|BT024146.1| Zea mays clone EL01N0450G02 mRNA sequence Length = 1678 Score = 172 bits (87), Expect = 5e-40 Identities = 126/138 (91%), Gaps = 1/138 (0%) Strand = Plus / Plus Query: 5 cgtgcattacgtgataccttcccgcctgctanaagcagctggaatcatggcactgagtgt 64 |||||| |||||||||||||||| || || | | |||||||||||||||||||||||||| Sbjct: 1065 cgtgcactacgtgataccttccctccggccaga-gcagctggaatcatggcactgagtgt 1123 Query: 65 cactagttcgtactacgaaatgacagagattgcaacccgtatactgcctaacattgttgt 124 |||| |||| |||||||||||||||||||||||||| || || ||||||||||||||||| Sbjct: 1124 cactggttcatactacgaaatgacagagattgcaactcgcatcctgcctaacattgttgt 1183 Query: 125 ccttacatttgacccaga 142 ||| |||||||||||||| Sbjct: 1184 cctcacatttgacccaga 1201
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 129 bits (65), Expect = 7e-27 Identities = 70/72 (97%) Strand = Plus / Minus Query: 144 agtgatgtgaggaccaaggctttccaggctactgaccaattcttgcaaatagcaaaacaa 203 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 34945308 agtgatgtgaggaccaaggctttccaggctactgatcaattcttgcaaatagcaaaacaa 34945249 Query: 204 catcatganaag 215 |||||||| ||| Sbjct: 34945248 catcatgaaaag 34945237 Score = 117 bits (59), Expect = 3e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 48 atcatggcactgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtata 107 |||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 34945945 atcatggcgctaagtgtcactagttcatactatgaaatgacagagattgcaactcgtatt 34945886 Query: 108 ctgcctaacattgttgtccttacatttgacccaga 142 ||||||||| |||||||||| |||||||| ||||| Sbjct: 34945885 ctgcctaacgttgttgtcctcacatttgatccaga 34945851 Score = 93.7 bits (47), Expect = 4e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 225 ggagacaacagggcagccgaaggtactggtgttcagttaaagcctggaaatgctagttta 284 ||||||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||||| Sbjct: 34944762 ggagacaacagcgcagccgaagctactggtatccagttaaagcctggaaatgctggttta 34944703 Query: 285 cttgggt 291 ||||||| Sbjct: 34944702 cttgggt 34944696 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 2 gtccgtgcattacgtgataccttcccgcctgct 34 |||||||||||||||||||||||||| |||||| Sbjct: 34946087 gtccgtgcattacgtgataccttcccccctgct 34946055 Score = 56.0 bits (28), Expect = 8e-05 Identities = 66/79 (83%) Strand = Plus / Minus Query: 289 ggtgggccatgagttctattactcagaagggaaaaccgancgaccatggtccagtatcta 348 ||||||| ||||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 34943626 ggtgggctatgagttctcttactcagaagggaaaaggttctgaccatggtccggtttcta 34943567 Query: 349 ctgcaaatgccagtaactc 367 ||||||||| || ||||| Sbjct: 34943566 gtgcaaatgctagcaactc 34943548
>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1529_G03 Length = 100635 Score = 129 bits (65), Expect = 7e-27 Identities = 70/72 (97%) Strand = Plus / Minus Query: 144 agtgatgtgaggaccaaggctttccaggctactgaccaattcttgcaaatagcaaaacaa 203 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 74672 agtgatgtgaggaccaaggctttccaggctactgatcaattcttgcaaatagcaaaacaa 74613 Query: 204 catcatganaag 215 |||||||| ||| Sbjct: 74612 catcatgaaaag 74601 Score = 117 bits (59), Expect = 3e-23 Identities = 86/95 (90%) Strand = Plus / Minus Query: 48 atcatggcactgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtata 107 |||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| Sbjct: 75309 atcatggcgctaagtgtcactagttcatactatgaaatgacagagattgcaactcgtatt 75250 Query: 108 ctgcctaacattgttgtccttacatttgacccaga 142 ||||||||| |||||||||| |||||||| ||||| Sbjct: 75249 ctgcctaacgttgttgtcctcacatttgatccaga 75215 Score = 93.7 bits (47), Expect = 4e-16 Identities = 62/67 (92%) Strand = Plus / Minus Query: 225 ggagacaacagggcagccgaaggtactggtgttcagttaaagcctggaaatgctagttta 284 ||||||||||| |||||||||| ||||||| | ||||||||||||||||||||| ||||| Sbjct: 74126 ggagacaacagcgcagccgaagctactggtatccagttaaagcctggaaatgctggttta 74067 Query: 285 cttgggt 291 ||||||| Sbjct: 74066 cttgggt 74060 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 2 gtccgtgcattacgtgataccttcccgcctgct 34 |||||||||||||||||||||||||| |||||| Sbjct: 75451 gtccgtgcattacgtgataccttcccccctgct 75419 Score = 56.0 bits (28), Expect = 8e-05 Identities = 66/79 (83%) Strand = Plus / Minus Query: 289 ggtgggccatgagttctattactcagaagggaaaaccgancgaccatggtccagtatcta 348 ||||||| ||||||||| ||||||||||||||||| ||||||||||| || |||| Sbjct: 72990 ggtgggctatgagttctcttactcagaagggaaaaggttctgaccatggtccggtttcta 72931 Query: 349 ctgcaaatgccagtaactc 367 ||||||||| || ||||| Sbjct: 72930 gtgcaaatgctagcaactc 72912
>emb|AL449188.2| Human DNA sequence from clone RP11-460G6 on chromosome Xq21.2-22.2, complete sequence Length = 64329 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 115 acattgttgtccttacatttg 135 ||||||||||||||||||||| Sbjct: 40934 acattgttgtccttacatttg 40914
>emb|AL662853.16| Mouse DNA sequence from clone RP23-293J16 on chromosome 11 Contains the Kremen gene for kringle containing transmembrane protein, the 3' end of a novel gene and a CpG island, complete sequence Length = 198703 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 tacatttgacccagacagtga 148 ||||||||||||||||||||| Sbjct: 196547 tacatttgacccagacagtga 196567
>gb|AY737528.1| Toxoptera citricida putative cofilin/actin depolymerizing factor-like mRNA, complete cds Length = 447 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 caaggctttccaggctactgacca 181 |||||| ||||||||||||||||| Sbjct: 366 caaggcgttccaggctactgacca 389
>gb|AC155230.2| Mus musculus BAC clone RP24-335J14 from chromosome 12, complete sequence Length = 135049 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 caattcttgcaaatagcaaa 199 |||||||||||||||||||| Sbjct: 30663 caattcttgcaaatagcaaa 30682
>emb|AL669817.7| Mouse DNA sequence from clone RP23-295J8 on chromosome 11, complete sequence Length = 120663 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 tgaggaccaaggctttccag 170 |||||||||||||||||||| Sbjct: 17199 tgaggaccaaggctttccag 17180
>emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on chromosome 4, complete sequence Length = 180239 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 gaggaccaaggctttccagg 171 |||||||||||||||||||| Sbjct: 42717 gaggaccaaggctttccagg 42698 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,574,644 Number of Sequences: 3902068 Number of extensions: 2574644 Number of successful extensions: 44348 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44300 Number of HSP's gapped (non-prelim): 45 length of query: 367 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 345 effective length of database: 17,147,199,772 effective search space: 5915783921340 effective search space used: 5915783921340 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
