>GLIS3_MOUSE (Q6XP49) Zinc finger protein GLIS3 (GLI-similar 3)|
          Length = 780

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
 Frame = -2

Query: 443 PMSPHPQHGEYSYGHHPEWSIHLKSLSPMNFGLFFHSE--------SCYWIILECILPPE 288
           P  P P +  + + HHPE   H +SLS    GL    E         C WI  +C    +
Sbjct: 300 PQGPPPPYHAHPHLHHPELLPHTQSLSLAQTGLEEDGEMEDSGGKHCCRWI--DCSALYD 357

Query: 287 ASKRLLLHCHPPHMHQ 240
             + L+ H    H+ Q
Sbjct: 358 QQEELVRHIEKVHIDQ 373

>AF9_GIBZE (Q4I7S1) Protein AF-9 homolog|
          Length = 268

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 537 GKSFRIIEVPRPVVAGFCCKDIKDDSPEDCQPDESTSTTWRVFV 406
           GK  ++ +V RP + G   K   D +P      ++ + +W+VFV
Sbjct: 8   GKRVKLTQVRRPFIVGSTAKPFSDTNPRPAGIPDNHTHSWQVFV 51

>CAS1B_XENLA (P55867) Caspase-1-B precursor (EC 3.4.22.-) (CASP-1-B)|
           (Interleukin-1 beta convertase homolog B) (xICE-B)
          Length = 382

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = -1

Query: 273 TASLSSPTHASITILSMVCK--DSSQCKQLGDILHPVIIMFAXXXXXXXXXXXPHNRXPV 100
           TAS  +PT  S+ I+ ++ K  + + C+ LGDI   V   F               R  +
Sbjct: 313 TASWRNPTKGSVFIIRLIEKMNELAHCQPLGDIFLEVQSSFKDKSPNQYSQMPTQERSTM 372

Query: 99  TISYYIF 79
           T  +Y+F
Sbjct: 373 TKKFYLF 379

>PRMA_SHEON (Q8EJR7) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 293

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +2

Query: 194 CLHWLESLQTIERIVIDACVGDDSEAVTSLKLLGVKCT------QELSSSKIRNEK 343
           CL WL+SL      VID   G    AV +LKL   K T      Q + +SK   E+
Sbjct: 148 CLEWLDSLDLSNEEVIDFGCGSGILAVAALKLGAKKVTGIDIDYQAIDASKANAER 203

>YKG7_CAEEL (P46557) Hypothetical protein B0285.7 precursor|
          Length = 781

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 18/74 (24%), Positives = 36/74 (48%)
 Frame = +2

Query: 203 WLESLQTIERIVIDACVGDDSEAVTSLKLLGVKCTQELSSSKIRNEKTSQSSSGTRILNE 382
           W+E + T E    +  +    E   + +L  VK T+++  SKIR    ++++   R+L +
Sbjct: 472 WMEGVVTTEHTCFEKALIAYVEWKINEELQIVKKTRKMEVSKIRPRNLNETADSVRVLRQ 531

Query: 383 LTTQDDAHTNTRHV 424
           + +Q     + R V
Sbjct: 532 IKSQSSNLCSPRFV 545

>PRMA_PASMU (Q9CLW2) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 293

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 194 CLHWLESLQTIERIVIDACVGDDSEAVTSLKL 289
           CL WL+SL   ++ VID   G    A+ +LKL
Sbjct: 148 CLEWLDSLDLQDKTVIDFGCGSGILAIAALKL 179

>KPK2_PLAFK (Q02595) Probable serine/threonine-protein kinase 2 (EC 2.7.11.1)|
          Length = 510

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 176 CKISPSCLHWLESLQTIERIVIDACVGDDSEAVTSLKLLG 295
           C IS +  HW+   ++++ I++  C  +  +  T+L+ LG
Sbjct: 321 CHISFNTKHWINKSESVKEIILWMCCKNPDDRCTALQALG 360

>QPCT_MOUSE (Q9CYK2) Glutaminyl-peptide cyclotransferase precursor (EC 2.3.2.5)|
           (QC) (Glutaminyl-tRNA cyclotransferase) (Glutaminyl
           cyclase)
          Length = 362

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 299 LPPEASKRLLLHCHPPHMHQLLFSRWSARIQANASNWEISC 177
           L PEA + L+L CH    +   F RW +R+   A++  + C
Sbjct: 128 LNPEAKRHLVLACHYDSKY---FPRWDSRVFVGATDSAVPC 165

>PRMA_SHIFL (P0A8T4) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 293

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 194 CLHWLESLQTIERIVIDACVGDDSEAVTSLKLLGVK 301
           CL WL+SL    + VID   G    A+ +LKL   K
Sbjct: 148 CLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAK 183

>PRMA_ECOLI (P0A8T1) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 293

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 194 CLHWLESLQTIERIVIDACVGDDSEAVTSLKLLGVK 301
           CL WL+SL    + VID   G    A+ +LKL   K
Sbjct: 148 CLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAK 183

>PRMA_ECOL6 (P0A8T2) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 293

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 194 CLHWLESLQTIERIVIDACVGDDSEAVTSLKLLGVK 301
           CL WL+SL    + VID   G    A+ +LKL   K
Sbjct: 148 CLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAK 183

>PRMA_ECO57 (P0A8T3) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 293

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 194 CLHWLESLQTIERIVIDACVGDDSEAVTSLKLLGVK 301
           CL WL+SL    + VID   G    A+ +LKL   K
Sbjct: 148 CLQWLDSLDLTGKTVIDFGCGSGILAIAALKLGAAK 183

>PRMA_VIBVU (Q8DD03) Ribosomal protein L11 methyltransferase (EC 2.1.1.-) (L11|
           Mtase)
          Length = 295

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 194 CLHWLESLQTIERIVIDACVGDDSEAVTSLKL 289
           CL WLESL    + VID   G    A+ ++KL
Sbjct: 149 CLEWLESLDLSGKTVIDFGCGSGILAIAAIKL 180

>FOXJ3_HUMAN (Q9UPW0) Forkhead box protein J3|
          Length = 622

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 22/76 (28%), Positives = 30/76 (39%)
 Frame = -2

Query: 461 HRRIASPMSPHPQHGEYSYGHHPEWSIHLKSLSPMNFGLFFHSESCYWIILECILPPEAS 282
           H ++    SPHP H  +    HP+ S H  +  P       HS+      L+   P   S
Sbjct: 372 HPQMHPQPSPHPPHRPHGLPQHPQRSPH-PAPHPQQ-----HSQ------LQSPHPQHPS 419

Query: 281 KRLLLHCHPPHMHQLL 234
               +  HP H HQ L
Sbjct: 420 PHQHIQHHPNHQHQTL 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,402,202
Number of Sequences: 219361
Number of extensions: 1935446
Number of successful extensions: 5003
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4999
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5424720305
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)