ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25e11 |
|---|---|
| Clone Library Name | barley_pub |
>TMED7_HUMAN (Q9Y3B3) Transmembrane emp24 domain-containing protein 7 precursor| Length = 224 Score = 47.4 bits (111), Expect = 4e-05 Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 4/120 (3%) Frame = +1 Query: 193 WTRACVLVLCIMPFLHPAAAIRFVI--DREECFSHNVEYEGDTVHVSFVVIKADTPWHYS 366 W + +L ++P A+ I F + + ++CF ++ +G + F VI T HY Sbjct: 17 WGCRLLALLLLVPGPGGASEITFELPDNAKQCFYEDIA-QGTKCTLEFQVI---TGGHYD 72 Query: 367 EDGVDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVG 540 VD ++D +G + K D F F K G ++FCF+N+ + H+T+ FD VG Sbjct: 73 ---VDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVG 129
>TMED3_MOUSE (Q78IS1) Transmembrane emp24 domain-containing protein 3 precursor| Length = 221 Score = 47.0 bits (110), Expect = 5e-05 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +1 Query: 274 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 453 ++CF VE +G + + VI T HY VD V+D G + K D F + Sbjct: 42 KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPRGNVIYRETKKQYDSFTY 94 Query: 454 IVQKRGVHRFCFTNK--SPYHETIDFDVHVG 540 + +GV+RFCF+N+ + H+T+ FD VG Sbjct: 95 KTEAKGVYRFCFSNEFSTFSHKTVYFDFQVG 125
>TMED3_HUMAN (Q9Y3Q3) Transmembrane emp24 domain-containing protein 3 precursor| (Membrane protein p24B) Length = 217 Score = 45.4 bits (106), Expect = 1e-04 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +1 Query: 274 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 453 ++CF VE +G + + VI T HY VD V+D G + K D F + Sbjct: 38 KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPQGNTIYRETKKQYDSFTY 90 Query: 454 IVQKRGVHRFCFTNK--SPYHETIDFDVHVG 540 + +GV++FCF+N+ + H+T+ FD VG Sbjct: 91 RAEVKGVYQFCFSNEFSTFSHKTVYFDFQVG 121
>TMED3_RAT (Q6AY25) Transmembrane emp24 domain-containing protein 3 precursor| Length = 221 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 2/91 (2%) Frame = +1 Query: 274 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 453 ++CF VE +G + + VI T HY VD V+D G + K D F + Sbjct: 42 KQCFHEEVE-QGVKFSLDYQVI---TGGHYD---VDCYVEDPMGNIIYRETKKQYDSFTY 94 Query: 454 IVQKRGVHRFCFTNK--SPYHETIDFDVHVG 540 + +GV+RFCF+N+ + H+T+ FD VG Sbjct: 95 KTEVKGVYRFCFSNEFSTFSHKTVYFDFQVG 125
>TMED2_CRIGR (P49020) Transmembrane emp24 domain trafficking protein 2 precursor| (COPI-coated vesicle membrane protein p24) (Fragment) Length = 196 Score = 35.8 bits (81), Expect = 0.11 Identities = 38/149 (25%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Frame = +1 Query: 214 VLCIMPFLHPAAAIRFV-IDR--EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDL 384 VL ++ L A+ FV ID EECF V G + + F V + + + V++ Sbjct: 2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEI 56 Query: 385 VVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFD 558 D+ G D ++S K+ F G ++FCF+N+ + + + F + +G Sbjct: 57 TGPDNKGIYKGDR--ESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQ 114 Query: 559 QHAKDEHFSPLFEQIAKLDEALYNIQFEQ 645 + H + L E I +L A+ ++ EQ Sbjct: 115 DMETEAHQNKLEEMINELAVAMTAVKHEQ 143
>TMED2_RAT (Q63524) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (RNP21.4) Length = 201 Score = 35.4 bits (80), Expect = 0.15 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Frame = +1 Query: 274 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 453 EECF V G + + F V + + + V++ D+ G D ++S K+ F Sbjct: 30 EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82 Query: 454 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALY 627 G ++FCF+N+ + + + F + +G + H + L E I +L A+ Sbjct: 83 AAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMT 142 Query: 628 NIQFEQ 645 ++ EQ Sbjct: 143 AVKHEQ 148
>TMED2_MOUSE (Q9R0Q3) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) (Sid 394) Length = 201 Score = 35.4 bits (80), Expect = 0.15 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Frame = +1 Query: 274 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 453 EECF V G + + F V + + + V++ D+ G D ++S K+ F Sbjct: 30 EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82 Query: 454 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALY 627 G ++FCF+N+ + + + F + +G + H + L E I +L A+ Sbjct: 83 AAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMT 142 Query: 628 NIQFEQ 645 ++ EQ Sbjct: 143 AVKHEQ 148
>TMED2_HUMAN (Q15363) Transmembrane emp24 domain trafficking protein 2 precursor| (Membrane protein p24A) Length = 201 Score = 35.4 bits (80), Expect = 0.15 Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 2/126 (1%) Frame = +1 Query: 274 EECFSHNVEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEF 453 EECF V G + + F V + + + V++ D+ G D ++S K+ F Sbjct: 30 EECFFERVT-SGTKMGLIFEVAEGG----FLDIDVEITGPDNKGIYKGDR--ESSGKYTF 82 Query: 454 IVQKRGVHRFCFTNK--SPYHETIDFDVHVGHYSYFDQHAKDEHFSPLFEQIAKLDEALY 627 G ++FCF+N+ + + + F + +G + H + L E I +L A+ Sbjct: 83 AAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMT 142 Query: 628 NIQFEQ 645 ++ EQ Sbjct: 143 AVKHEQ 148
>SEL9_CAEEL (O17528) Suppressor/enhancer of lin-12 protein 9 precursor| Length = 203 Score = 35.0 bits (79), Expect = 0.19 Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 13/169 (7%) Frame = +1 Query: 178 MEGLSWTRACVLVLCIMPFLHPAAAIRFVID--REECFSHNVEYEGDTVHVSFVVIKADT 351 M L+W A + F+ PAA+ +D E+CF + G + + F V Sbjct: 1 MNSLTWILAVL-------FVTPAASYFIHVDANEEQCFFDRLT-SGTKMGLMFEV----- 47 Query: 352 PWHYSEDG---VDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRGVHRFCFTNK----SPYH 510 +E G +D+ + + ++ ++S KF F GV+ +CF NK +P Sbjct: 48 ----AEGGFLDIDVKITGPDNKEIYKGERESSGKFTFAAHMDGVYTYCFGNKMSTMTPKA 103 Query: 511 ETIDFDVHVGHY----SYFDQHAKDEHFSPLFEQIAKLDEALYNIQFEQ 645 ++ H + +Q A D + L E + +L AL +++ EQ Sbjct: 104 VMFTVEITEPHQQAPGAAANQDAADN--AKLEEMVRELSSALMSVKHEQ 150
>GLPB_HALSA (Q9HNS3) Probable anaerobic glycerol-3-phosphate dehydrogenase| subunit B (EC 1.1.99.5) (Anaerobic G-3-P dehydrogenase subunit B) (Anaerobic G3Pdhase B) Length = 427 Score = 31.6 bits (70), Expect = 2.1 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%) Frame = +1 Query: 295 VEYEGDTVHVSFVVIKADTPWHYSEDGVDLVVKDSNGAQVRDSRDKTSDKFEFIVQKRG- 471 +E G + V+ ADT + GV+ V + NGA++ +S D E+++ G Sbjct: 272 LEAAGVRIETGNPVVDADT----TAGGVETVYVEKNGARIPNSAD------EYVLATGGL 321 Query: 472 VHRFCFTNKSPYHETIDFDVHVGH----YSYFDQHAKDEH 579 V + +++ +E I FD + H Y++FD A +H Sbjct: 322 VGKGIDSDRDAVYEPI-FDCRIAHSDDRYAWFDDDAFGDH 360
>MDHC_PIG (P11708) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 613 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 443 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTV 226
>MDHC_HUMAN (P40925) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 613 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 443 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTV 226
>MDHC_BOVIN (Q3T145) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.4 bits (67), Expect = 4.8 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 613 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 443 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>PRPP_HUMAN (P81489) Salivary proline-rich protein II-1 (Fragment)| Length = 174 Score = 30.4 bits (67), Expect = 4.8 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +1 Query: 40 PPPSKEGGAPPGSTGAGRQQRFLRRPPAGGN 132 PPP K G PP G G+ + R PP GG+ Sbjct: 99 PPPGKPEGRPPQQGGPGKPE---RPPPQGGD 126
>MDHC_RAT (O88989) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 613 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 443 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MDHC_MOUSE (P14152) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 613 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 443 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTADDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFITTV 226
>MDHC_FELCA (Q7YRU4) Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) (Cytosolic| malate dehydrogenase) Length = 333 Score = 30.0 bits (66), Expect = 6.2 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%) Frame = -2 Query: 613 LTLQFVQTKVKNVHLW--HADQNTNNVQHARRSLWFRDMGIYW*SRSDGHLSSEL*TQI 443 L L VKNV +W H+ +V HA+ L +++G+Y + D L E T + Sbjct: 168 LKLGVTSDDVKNVIIWGNHSSTQYPDVSHAKVKLHGKEVGVYDALKDDSWLKGEFITTV 226
>ERP5_YEAST (P38819) Protein ERP5 precursor| Length = 212 Score = 30.0 bits (66), Expect = 6.2 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Frame = +1 Query: 400 NGAQVRDSRDKTSDKFEFIVQKRGVHRFCFT---NKSPYHETIDFDVHVGHYSYFDQHAK 570 N +V + ++ + F G HRFCFT +K + ++ +G+ D K Sbjct: 76 NDHRVLNQKNSHTGDVTFTALDTGEHRFCFTPFYSKKSATLRVFIELEIGNVEALDS-KK 134 Query: 571 DEHFSPLFEQIAKLDEALYNIQFEQ 645 E + L ++ +L + L +I+ EQ Sbjct: 135 KEDMNSLKGRVGQLTQRLSSIRKEQ 159
>SYFB_NITEU (Q82VV6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 788 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +1 Query: 178 MEGLSWTRACVLVLCIMPFLHPAAAIRFVIDRE 276 +E L W R+ L + P LHP + R +ID++ Sbjct: 618 IESLFWPRSVYFELALHPALHPGKSARILIDKK 650
>NXF1_COTJA (P58797) Nuclear RNA export factor 1 (Tip-associating protein)| (Tip-associated protein) (mRNA export factor TAP) Length = 616 Score = 29.6 bits (65), Expect = 8.1 Identities = 24/77 (31%), Positives = 31/77 (40%) Frame = +1 Query: 4 ARG*HLEYRLLLPPPSKEGGAPPGSTGAGRQQRFLRRPPAGGN*EALYDXXXXXXXXIME 183 +R HL R LPPP + GG GS GR+ F P G YD Sbjct: 87 SRAPHLTVRRDLPPPDRSGG---GSRDGGRRNWFKITIPYGKK----YDK---------- 129 Query: 184 GLSWTRACVLVLCIMPF 234 +W + + LC +PF Sbjct: 130 --TWLLSSIQNLCSVPF 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,111,219 Number of Sequences: 219361 Number of extensions: 2055671 Number of successful extensions: 5927 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5918 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
