ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191110.1| Oryza sativa (japonica cultivar-group), predic... 505 e-140
2dbj|AK067401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 505 e-140
3gb|BT024058.1| Zea mays clone EL01N0440G07 mRNA sequence 365 1e-97
4gb|AY104513.1| Zea mays PCO102994 mRNA sequence 222 9e-55
5gb|BT024146.1| Zea mays clone EL01N0450G02 mRNA sequence 204 2e-49
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
7dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic D... 135 2e-28
8emb|AL135902.16| Human DNA sequence from clone RP11-204P2 on chr... 44 0.47
9gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.9
10gb|AC137679.11| Mus musculus chromosome 12, clone RP23-302N13, c... 42 1.9
11gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
12emb|AL449188.2| Human DNA sequence from clone RP11-460G6 on chro... 42 1.9
13emb|AL662853.16| Mouse DNA sequence from clone RP23-293J16 on ch... 42 1.9
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
15gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
16gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome ... 40 7.3
17gb|AY737528.1| Toxoptera citricida putative cofilin/actin depoly... 40 7.3
18gb|AC155230.2| Mus musculus BAC clone RP24-335J14 from chromosom... 40 7.3
19gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 o... 40 7.3
20emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.3
21emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 7.3
22emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 7.3
23emb|AL669817.7| Mouse DNA sequence from clone RP23-295J8 on chro... 40 7.3
24gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome 40 7.3
25gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.3
26gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome 40 7.3
27dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, compl... 40 7.3
28emb|BX537134.5| Zebrafish DNA sequence from clone CH211-205J6, c... 40 7.3
29gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 7.3
30emb|AL772138.15| Mouse DNA sequence from clone RP23-213F17 on ch... 40 7.3
31gb|AC125522.4| Mus musculus BAC clone RP24-363I16 from 1, comple... 40 7.3
32gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, comple... 40 7.3
33gb|AC147129.3| Mus musculus BAC clone RP24-531L5 from 1, complet... 40 7.3
34emb|CR354440.22| Zebrafish DNA sequence from clone DKEYP-100B9 i... 40 7.3
35emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on ch... 40 7.3
36emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on ch... 40 7.3 
>ref|NM_191110.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2403

 Score =  505 bits (255), Expect = e-140
 Identities = 446/509 (87%), Gaps = 3/509 (0%)
 Strand = Plus / Plus

                                                                        
Query: 24   gcattcacagtccgtgcattacgtgataccttcccgcctgctcgagcagctggaatcatg 83
            ||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1381 gcatttactgtccgtgcattacgtgataccttcccccctgctcgagcagctggcatcatg 1440

                                                                        
Query: 84   gcactgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtatactgcct 143
            || || |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 1441 gcgctaagtgtcactagttcatactatgaaatgacagagattgcaactcgtattctgcct 1500

                                                                        
Query: 144  aacattgttgtccttacatttgacccagacagtgatgtgaggaccaaggctttccaggct 203
            ||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1501 aacgttgttgtcctcacatttgatccagatagtgatgtgaggaccaaggctttccaggct 1560

                                                                        
Query: 204  actgaccaattcttgcaaatagcaaaacaacatcatgaaaagcttaacacaggagacaac 263
            ||||| ||||||||||||||||||||||||||||||||||||||||  |  |||||||||
Sbjct: 1561 actgatcaattcttgcaaatagcaaaacaacatcatgaaaagcttactatgggagacaac 1620

                                                                        
Query: 264  agggcagccgaaggtactggtgttcagttaaagcctggaaatgctagtttacttgggtgg 323
            || |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct: 1621 agcgcagccgaagctactggtatccagttaaagcctggaaatgctggtttacttgggtgg 1680

                                                                        
Query: 324  gccatgagttctattactcagaagggaaaaccgtccgaccatggtccagtatctactgca 383
            || ||||||||| |||||||||||||||||   || ||||||||||| || |||| ||||
Sbjct: 1681 gctatgagttctcttactcagaagggaaaaggttctgaccatggtccggtttctagtgca 1740

                                                                        
Query: 384  aatgccagtaactctcaagtttcagcaccccccagtaccacctcagatactcactctgcc 443
            ||||| || ||||||||| |||||||| || |||||  ||| ||||||| |   ||| ||
Sbjct: 1741 aatgctagcaactctcaaatttcagcaacctccagtgtcacatcagataatagatcttcc 1800

                                                                        
Query: 444  ccagcagcatatgcaccagcagccgcttccaattcttttgatcaaactgcaccagcatca 503
             | | |||||||||||   || || |||| |  ||| |||||||||||||||||||||||
Sbjct: 1801 accgtagcatatgcac---catccacttctagctctcttgatcaaactgcaccagcatca 1857

                                         
Query: 504  gcaagctcatctatggatggatggggtga 532
            ||||| || ||  ||||||| ||||||||
Sbjct: 1858 gcaaggtcctcggtggatgggtggggtga 1886
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>dbj|AK067401.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013105B05, full
            insert sequence
          Length = 2889

 Score =  505 bits (255), Expect = e-140
 Identities = 446/509 (87%), Gaps = 3/509 (0%)
 Strand = Plus / Plus

                                                                        
Query: 24   gcattcacagtccgtgcattacgtgataccttcccgcctgctcgagcagctggaatcatg 83
            ||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1686 gcatttactgtccgtgcattacgtgataccttcccccctgctcgagcagctggcatcatg 1745

                                                                        
Query: 84   gcactgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtatactgcct 143
            || || |||||||||||||| ||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 1746 gcgctaagtgtcactagttcatactatgaaatgacagagattgcaactcgtattctgcct 1805

                                                                        
Query: 144  aacattgttgtccttacatttgacccagacagtgatgtgaggaccaaggctttccaggct 203
            ||| |||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1806 aacgttgttgtcctcacatttgatccagatagtgatgtgaggaccaaggctttccaggct 1865

                                                                        
Query: 204  actgaccaattcttgcaaatagcaaaacaacatcatgaaaagcttaacacaggagacaac 263
            ||||| ||||||||||||||||||||||||||||||||||||||||  |  |||||||||
Sbjct: 1866 actgatcaattcttgcaaatagcaaaacaacatcatgaaaagcttactatgggagacaac 1925

                                                                        
Query: 264  agggcagccgaaggtactggtgttcagttaaagcctggaaatgctagtttacttgggtgg 323
            || |||||||||| ||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct: 1926 agcgcagccgaagctactggtatccagttaaagcctggaaatgctggtttacttgggtgg 1985

                                                                        
Query: 324  gccatgagttctattactcagaagggaaaaccgtccgaccatggtccagtatctactgca 383
            || ||||||||| |||||||||||||||||   || ||||||||||| || |||| ||||
Sbjct: 1986 gctatgagttctcttactcagaagggaaaaggttctgaccatggtccggtttctagtgca 2045

                                                                        
Query: 384  aatgccagtaactctcaagtttcagcaccccccagtaccacctcagatactcactctgcc 443
            ||||| || ||||||||| |||||||| || |||||  ||| ||||||| |   ||| ||
Sbjct: 2046 aatgctagcaactctcaaatttcagcaacctccagtgtcacatcagataatagatcttcc 2105

                                                                        
Query: 444  ccagcagcatatgcaccagcagccgcttccaattcttttgatcaaactgcaccagcatca 503
             | | |||||||||||   || || |||| |  ||| |||||||||||||||||||||||
Sbjct: 2106 accgtagcatatgcac---catccacttctagctctcttgatcaaactgcaccagcatca 2162

                                         
Query: 504  gcaagctcatctatggatggatggggtga 532
            ||||| || ||  ||||||| ||||||||
Sbjct: 2163 gcaaggtcctcggtggatgggtggggtga 2191
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>gb|BT024058.1| Zea mays clone EL01N0440G07 mRNA sequence
          Length = 1739

 Score =  365 bits (184), Expect = 1e-97
 Identities = 330/376 (87%), Gaps = 2/376 (0%)
 Strand = Plus / Plus

                                                                       
Query: 29  cacagtccgtgcattacgtgatacc-ttcccgcctgctc-gagcagctggaatcatggca 86
           |||||| |||||||||||||||||| ||||| || |  | ||||||||||||||||||||
Sbjct: 509 cacagttcgtgcattacgtgatacccttccctcccggccagagcagctggaatcatggca 568

                                                                       
Query: 87  ctgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtatactgcctaac 146
           ||||||||||||||||| ||||| |||||||||||||||||||| || || |||||||||
Sbjct: 569 ctgagtgtcactagttcatactatgaaatgacagagattgcaactcgcatcctgcctaac 628

                                                                       
Query: 147 attgttgtccttacatttgacccagacagtgatgtgaggaccaaggctttccaggctact 206
           |||||||| || |||||||||||| | ||||||||  | || |||||||| |||||||| 
Sbjct: 629 attgttgtgctcacatttgacccaaatagtgatgtccgaacgaaggcttttcaggctacc 688

                                                                       
Query: 207 gaccaattcttgcaaatagcaaaacaacatcatgaaaagcttaacacaggagacaacagg 266
           || || ||||||||||||||||||||||| |||||||||||||| |||||||||||||| 
Sbjct: 689 gatcagttcttgcaaatagcaaaacaacaccatgaaaagcttaatacaggagacaacagt 748

                                                                       
Query: 267 gcagccgaaggtactggtgttcagttaaagcctggaaatgctagtttacttgggtgggcc 326
           |  || ||| ||||||||||| |||||||||||||||||||  |||||||||||||||||
Sbjct: 749 gtggctgaaagtactggtgttaagttaaagcctggaaatgcaggtttacttgggtgggcc 808

                                                                       
Query: 327 atgagttctattactcagaagggaaaaccgtccgaccatggtccagtatctactgcaaat 386
           ||||||||| |||| || ||||| ||||| |  |||||||  ||| ||||||||||||||
Sbjct: 809 atgagttctgttacacaaaagggtaaaccttttgaccatgccccaatatctactgcaaat 868

                           
Query: 387 gccagtaactctcaag 402
           |||| ||| |||||||
Sbjct: 869 gccaataattctcaag 884



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                   
Query: 481  ttgatcaaactgcaccagcatcagcaagctcatctatggatggatggggtgagct 535
            |||||||| ||||| ||||||||||||| || ||  | ||||| |||||||||||
Sbjct: 960  ttgatcaagctgcatcagcatcagcaaggtcgtcagtagatgggtggggtgagct 1014
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>gb|AY104513.1| Zea mays PCO102994 mRNA sequence
          Length = 905

 Score =  222 bits (112), Expect = 9e-55
 Identities = 187/212 (88%)
 Strand = Plus / Plus

                                                                       
Query: 191 ggctttccaggctactgaccaattcttgcaaatagcaaaacaacatcatgaaaagcttaa 250
           |||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1   ggctttccaggctactgatcagttcttgcaaatagcaaagcaacaccatgaaaagcttaa 60

                                                                       
Query: 251 cacaggagacaacagggcagccgaaggtactggtgttcagttaaagcctggaaatgctag 310
            || |||||||||||||  || ||| ||||||||||| |||||||||||||||||||  |
Sbjct: 61  tacgggagacaacagggtggctgaaagtactggtgttaagttaaagcctggaaatgcagg 120

                                                                       
Query: 311 tttacttgggtgggccatgagttctattactcagaagggaaaaccgtccgaccatggtcc 370
           ||||||||||||||||||||||||| |||| || ||||| ||||| |  |||||||  ||
Sbjct: 121 tttacttgggtgggccatgagttctgttacacaaaagggtaaaccttttgaccatgcccc 180

                                           
Query: 371 agtatctactgcaaatgccagtaactctcaag 402
           | |||||||||||||||||| ||| |||||||
Sbjct: 181 aatatctactgcaaatgccaataattctcaag 212



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 481 ttgatcaaactgcaccagcatcagcaag 508
           |||||||| |||||||||||||| ||||
Sbjct: 288 ttgatcaagctgcaccagcatcaacaag 315
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>gb|BT024146.1| Zea mays clone EL01N0450G02 mRNA sequence
          Length = 1678

 Score =  204 bits (103), Expect = 2e-49
 Identities = 139/151 (92%)
 Strand = Plus / Plus

                                                                        
Query: 22   atgcattcacagtccgtgcattacgtgataccttcccgcctgctcgagcagctggaatca 81
            ||||||||||||| |||||| |||||||||||||||| || ||  |||||||||||||||
Sbjct: 1051 atgcattcacagttcgtgcactacgtgataccttccctccggccagagcagctggaatca 1110

                                                                        
Query: 82   tggcactgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtatactgc 141
            ||||||||||||||||| |||| |||||||||||||||||||||||||| || || ||||
Sbjct: 1111 tggcactgagtgtcactggttcatactacgaaatgacagagattgcaactcgcatcctgc 1170

                                           
Query: 142  ctaacattgttgtccttacatttgacccaga 172
            |||||||||||||||| ||||||||||||||
Sbjct: 1171 ctaacattgttgtcctcacatttgacccaga 1201
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  135 bits (68), Expect = 2e-28
 Identities = 71/72 (98%)
 Strand = Plus / Minus

                                                                            
Query: 174      agtgatgtgaggaccaaggctttccaggctactgaccaattcttgcaaatagcaaaacaa 233
                ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 34945308 agtgatgtgaggaccaaggctttccaggctactgatcaattcttgcaaatagcaaaacaa 34945249

                            
Query: 234      catcatgaaaag 245
                ||||||||||||
Sbjct: 34945248 catcatgaaaag 34945237



 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                            
Query: 78       atcatggcactgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtata 137
                |||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| 
Sbjct: 34945945 atcatggcgctaagtgtcactagttcatactatgaaatgacagagattgcaactcgtatt 34945886

                                                   
Query: 138      ctgcctaacattgttgtccttacatttgacccaga 172
                ||||||||| |||||||||| |||||||| |||||
Sbjct: 34945885 ctgcctaacgttgttgtcctcacatttgatccaga 34945851



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                            
Query: 255      ggagacaacagggcagccgaaggtactggtgttcagttaaagcctggaaatgctagttta 314
                ||||||||||| |||||||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 34944762 ggagacaacagcgcagccgaagctactggtatccagttaaagcctggaaatgctggttta 34944703

                       
Query: 315      cttgggt 321
                |||||||
Sbjct: 34944702 cttgggt 34944696



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                            
Query: 319      ggtgggccatgagttctattactcagaagggaaaaccgtccgaccatggtccagtatcta 378
                ||||||| ||||||||| |||||||||||||||||   || ||||||||||| || ||||
Sbjct: 34943626 ggtgggctatgagttctcttactcagaagggaaaaggttctgaccatggtccggtttcta 34943567

                                                         
Query: 379      ctgcaaatgccagtaactctcaagtttcagcaccccccagt 419
                 ||||||||| || ||||||||| |||||||| || |||||
Sbjct: 34943566 gtgcaaatgctagcaactctcaaatttcagcaacctccagt 34943526



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                     
Query: 24       gcattcacagtccgtgcattacgtgataccttcccgcctgctcgagcagctgg 76
                ||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 34946096 gcatttactgtccgtgcattacgtgataccttcccccctgctcgagcagctgg 34946044



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 481      ttgatcaaactgcaccagcatcagcaagctcatctatggatggatggggtga 532
                |||||||||||||||||||||||||||| || ||  ||||||| ||||||||
Sbjct: 34943282 ttgatcaaactgcaccagcatcagcaaggtcctcggtggatgggtggggtga 34943231
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>dbj|AP003446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1529_G03
          Length = 100635

 Score =  135 bits (68), Expect = 2e-28
 Identities = 71/72 (98%)
 Strand = Plus / Minus

                                                                         
Query: 174   agtgatgtgaggaccaaggctttccaggctactgaccaattcttgcaaatagcaaaacaa 233
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 74672 agtgatgtgaggaccaaggctttccaggctactgatcaattcttgcaaatagcaaaacaa 74613

                         
Query: 234   catcatgaaaag 245
             ||||||||||||
Sbjct: 74612 catcatgaaaag 74601



 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                         
Query: 78    atcatggcactgagtgtcactagttcgtactacgaaatgacagagattgcaacccgtata 137
             |||||||| || |||||||||||||| ||||| |||||||||||||||||||| ||||| 
Sbjct: 75309 atcatggcgctaagtgtcactagttcatactatgaaatgacagagattgcaactcgtatt 75250

                                                
Query: 138   ctgcctaacattgttgtccttacatttgacccaga 172
             ||||||||| |||||||||| |||||||| |||||
Sbjct: 75249 ctgcctaacgttgttgtcctcacatttgatccaga 75215



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                         
Query: 255   ggagacaacagggcagccgaaggtactggtgttcagttaaagcctggaaatgctagttta 314
             ||||||||||| |||||||||| ||||||| | ||||||||||||||||||||| |||||
Sbjct: 74126 ggagacaacagcgcagccgaagctactggtatccagttaaagcctggaaatgctggttta 74067

                    
Query: 315   cttgggt 321
             |||||||
Sbjct: 74066 cttgggt 74060



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                         
Query: 319   ggtgggccatgagttctattactcagaagggaaaaccgtccgaccatggtccagtatcta 378
             ||||||| ||||||||| |||||||||||||||||   || ||||||||||| || ||||
Sbjct: 72990 ggtgggctatgagttctcttactcagaagggaaaaggttctgaccatggtccggtttcta 72931

                                                      
Query: 379   ctgcaaatgccagtaactctcaagtttcagcaccccccagt 419
              ||||||||| || ||||||||| |||||||| || |||||
Sbjct: 72930 gtgcaaatgctagcaactctcaaatttcagcaacctccagt 72890



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                  
Query: 24    gcattcacagtccgtgcattacgtgataccttcccgcctgctcgagcagctgg 76
             ||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 75460 gcatttactgtccgtgcattacgtgataccttcccccctgctcgagcagctgg 75408



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 481   ttgatcaaactgcaccagcatcagcaagctcatctatggatggatggggtga 532
             |||||||||||||||||||||||||||| || ||  ||||||| ||||||||
Sbjct: 72646 ttgatcaaactgcaccagcatcagcaaggtcctcggtggatgggtggggtga 72595
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>emb|AL135902.16| Human DNA sequence from clone RP11-204P2 on chromosome 6 Contains the
              IL20RA gene for interleukin 20 receptor alpha, a novel
              gene, the 5' part of a novel gene and a CpG island,
              complete sequence
          Length = 152228

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 431    tactcactctgccccagcagca 452
              ||||||||||||||||||||||
Sbjct: 103151 tactcactctgccccagcagca 103172
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 488     aactgcaccagcatcagcaag 508
               |||||||||||||||||||||
Sbjct: 5140323 aactgcaccagcatcagcaag 5140343
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>gb|AC137679.11| Mus musculus chromosome 12, clone RP23-302N13, complete sequence
          Length = 186273

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 387   gccagtaactctcaagtttca 407
             |||||||||||||||||||||
Sbjct: 61756 gccagtaactctcaagtttca 61736
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>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0052H02, complete sequence
          Length = 159632

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 492    gcaccagcatcagcaagctca 512
              |||||||||||||||||||||
Sbjct: 105890 gcaccagcatcagcaagctca 105870
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>emb|AL449188.2| Human DNA sequence from clone RP11-460G6 on chromosome Xq21.2-22.2,
             complete sequence
          Length = 64329

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 145   acattgttgtccttacatttg 165
             |||||||||||||||||||||
Sbjct: 40934 acattgttgtccttacatttg 40914
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>emb|AL662853.16| Mouse DNA sequence from clone RP23-293J16 on chromosome 11 Contains the
              Kremen gene for kringle containing transmembrane protein,
              the 3' end of a novel gene and a CpG island, complete
              sequence
          Length = 198703

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 158    tacatttgacccagacagtga 178
              |||||||||||||||||||||
Sbjct: 196547 tacatttgacccagacagtga 196567
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 492     gcaccagcatcagcaagctca 512
               |||||||||||||||||||||
Sbjct: 2826083 gcaccagcatcagcaagctca 2826063
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 492     gcaccagcatcagcaagctca 512
               |||||||||||||||||||||
Sbjct: 2835114 gcaccagcatcagcaagctca 2835094
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>gb|AC155166.4| Mus musculus BAC clone RP24-69M8 from chromosome 8, complete sequence
          Length = 212711

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   catcagcaagctcatctatg 518
             ||||||||||||||||||||
Sbjct: 27119 catcagcaagctcatctatg 27138
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>gb|AY737528.1| Toxoptera citricida putative cofilin/actin depolymerizing
           factor-like mRNA, complete cds
          Length = 447

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 188 caaggctttccaggctactgacca 211
           |||||| |||||||||||||||||
Sbjct: 366 caaggcgttccaggctactgacca 389
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>gb|AC155230.2| Mus musculus BAC clone RP24-335J14 from chromosome 12, complete
             sequence
          Length = 135049

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   caattcttgcaaatagcaaa 229
             ||||||||||||||||||||
Sbjct: 30663 caattcttgcaaatagcaaa 30682
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>gb|AE017157.1| Chlamydophila pneumoniae TW-183, section 1 of 4 of the complete genome
          Length = 300923

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    aacaacatcatgaaaagctt 248
              ||||||||||||||||||||
Sbjct: 181532 aacaacatcatgaaaagctt 181513
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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     ccgcctgctcgagcagctgg 76
              ||||||||||||||||||||
Sbjct: 144039 ccgcctgctcgagcagctgg 144020
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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     ccgcctgctcgagcagctgg 76
              ||||||||||||||||||||
Sbjct: 256457 ccgcctgctcgagcagctgg 256438
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     ccgcctgctcgagcagctgg 76
              ||||||||||||||||||||
Sbjct: 241166 ccgcctgctcgagcagctgg 241147
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>emb|AL669817.7| Mouse DNA sequence from clone RP23-295J8 on chromosome 11, complete
             sequence
          Length = 120663

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   tgaggaccaaggctttccag 200
             ||||||||||||||||||||
Sbjct: 17199 tgaggaccaaggctttccag 17180
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>gb|AE002161.1| Chlamydophila pneumoniae AR39, complete genome
          Length = 1229853

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 229    aacaacatcatgaaaagctt 248
              ||||||||||||||||||||
Sbjct: 657164 aacaacatcatgaaaagctt 657183
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      ccgcctgctcgagcagctgg 76
               ||||||||||||||||||||
Sbjct: 1051127 ccgcctgctcgagcagctgg 1051146
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>gb|AE001363.1| Chlamydophila pneumoniae CWL029, complete genome
          Length = 1230230

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    aacaacatcatgaaaagctt 248
              ||||||||||||||||||||
Sbjct: 184037 aacaacatcatgaaaagctt 184018
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>dbj|BA000008.3| Chlamydophila pneumoniae J138 genomic DNA, complete sequence
          Length = 1226565

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    aacaacatcatgaaaagctt 248
              ||||||||||||||||||||
Sbjct: 183748 aacaacatcatgaaaagctt 183729
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>emb|BX537134.5| Zebrafish DNA sequence from clone CH211-205J6, complete sequence
          Length = 192029

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 391    gtaactctcaagtttcagca 410
              ||||||||||||||||||||
Sbjct: 185835 gtaactctcaagtttcagca 185854
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 223    tagcaaaacaacatcatgaaaagcttaa 250
              |||||||||||| | |||||||||||||
Sbjct: 817303 tagcaaaacaacttaatgaaaagcttaa 817276
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>emb|AL772138.15| Mouse DNA sequence from clone RP23-213F17 on chromosome 4, complete
             sequence
          Length = 229213

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 227   aaaacaacatcatgaaaagcttaa 250
             ||||||| ||||||||||||||||
Sbjct: 68750 aaaacaaaatcatgaaaagcttaa 68727
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>gb|AC125522.4| Mus musculus BAC clone RP24-363I16 from 1, complete sequence
          Length = 100480

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    gagcagctggaatcatggca 86
             ||||||||||||||||||||
Sbjct: 71331 gagcagctggaatcatggca 71350
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>gb|AC133497.4| Mus musculus BAC clone RP24-390A22 from 8, complete sequence
          Length = 158740

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 499   catcagcaagctcatctatg 518
             ||||||||||||||||||||
Sbjct: 67906 catcagcaagctcatctatg 67925
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>gb|AC147129.3| Mus musculus BAC clone RP24-531L5 from 1, complete sequence
          Length = 147476

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     gagcagctggaatcatggca 86
              ||||||||||||||||||||
Sbjct: 101388 gagcagctggaatcatggca 101369
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>emb|CR354440.22| Zebrafish DNA sequence from clone DKEYP-100B9 in linkage group 13,
             complete sequence
          Length = 155023

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 391   gtaactctcaagtttcagca 410
             ||||||||||||||||||||
Sbjct: 74410 gtaactctcaagtttcagca 74429
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>emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on chromosome 4, complete
              sequence
          Length = 201752

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 495    ccagcatcagcaagctcatc 514
              ||||||||||||||||||||
Sbjct: 110234 ccagcatcagcaagctcatc 110253
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>emb|AL671190.10| Mouse DNA sequence from clone RP23-464L12 on chromosome 4, complete
             sequence
          Length = 180239

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   gaggaccaaggctttccagg 201
             ||||||||||||||||||||
Sbjct: 42717 gaggaccaaggctttccagg 42698


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,877,364
Number of Sequences: 3902068
Number of extensions: 4877364
Number of successful extensions: 84203
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83946
Number of HSP's gapped (non-prelim): 256
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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