ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25d12 |
|---|---|
| Clone Library Name | barley_pub |
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 75.9 bits (185), Expect = 5e-14 Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 1/118 (0%) Frame = +1 Query: 118 AMEHKETGCQSREGPILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVN 297 A EH+ C++ EG LCVNNCGFFGS+ATMN+CS C+ ++ +KQ+Q S+ +S ++ Sbjct: 2 AEEHR---CETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLS 58 Query: 298 GGDA-VKEHLAAGSTAVAVAHVQAKALITAQPADIXGPSEAAMESPKGPSRCSTCRKR 468 A V E+ AA + K +P I P+E P+ P+RC+ CRKR Sbjct: 59 PVIAPVLENYAAELEIPTTKKTEEK-----KPIQI--PTEQP-SPPQRPNRCTVCRKR 108
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 58.5 bits (140), Expect = 8e-09 Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 15/118 (12%) Frame = +1 Query: 160 PILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGST 339 P LC N CGFFGS + MN+CSKC++ + +++Q +A + AVK L S Sbjct: 16 PKLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQTAVAKA----------AVKNSLKLPSC 65 Query: 340 AVAV-----------AHVQAKALITAQPADIXGPSEAAMESPKGP----SRCSTCRKR 468 ++ AH++ ++TA+P+ + +E P P +RC +C K+ Sbjct: 66 SIIAPGQKHPLEIKPAHLET-VVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKK 122
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 53.9 bits (128), Expect = 2e-07 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%) Frame = +1 Query: 124 EHKETGCQSREGPILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGG 303 E ++ S P LCV CGFFGS + MN+CSKC++++ +EQ A ++ + +N Sbjct: 4 EQNDSTSFSPSEPKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPN 63 Query: 304 DAVKEHLAAGSTAVAVAHVQAKALITAQPADIXGPSEAA-MESPKG-PSRCSTCRKR 468 + + V + + T G S AA ++ PK +RC +C K+ Sbjct: 64 KPKTQPQQSQEITQGVLGSGSSSSSTR-----GGDSAAAPLDPPKSTATRCLSCNKK 115
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 47.0 bits (110), Expect = 2e-05 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 14/107 (13%) Frame = +1 Query: 157 GPILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQA-----------KLAASSFDSIVNGG 303 GP+LC CGF+G+ T MCS C+KE +Q+ + + +S + V Sbjct: 10 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRA 69 Query: 304 DAVKEHL--AAGSTAVAVAHVQAKAL-ITAQPADIXGPSEAAMESPK 435 DA + AAGST+ +V AL +T Q ++ E + +PK Sbjct: 70 DAGLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPK 116
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 46.6 bits (109), Expect = 3e-05 Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 14/107 (13%) Frame = +1 Query: 157 GPILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKL-----AASSFDSIVNGGDAVKE- 318 GP+LC CGF+G+ T MCS C+KE +Q+ + AS +S + +V+ Sbjct: 10 GPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRA 69 Query: 319 -------HLAAGSTAVAVAHVQAKAL-ITAQPADIXGPSEAAMESPK 435 AAGST+ +V AL +T Q ++ E + +PK Sbjct: 70 DTSLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPK 116
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 40.4 bits (93), Expect = 0.002 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Frame = +1 Query: 133 ETGCQSREGPILCVN-NCGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDS 288 +TG + P L CGF+GS+ TMN+CSKC + KQ A S+ S Sbjct: 3 DTGSERSNAPSLPPRCPCGFWGSSKTMNLCSKCFADFQKKQPDEDTAPSTSSS 55
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 40.0 bits (92), Expect = 0.003 Identities = 27/93 (29%), Positives = 40/93 (43%) Frame = +1 Query: 181 CGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAVAVAHV 360 CGF+GS+ TMN+CSKC + KQ A S+ +S D E + + ++ Sbjct: 20 CGFWGSSKTMNLCSKCFADFQKKQPDDDSAPSTSNS---QSDLFSEETTSDNNNTSI--- 73 Query: 361 QAKALITAQPADIXGPSEAAMESPKGPSRCSTC 459 T P+ P+E + SP C C Sbjct: 74 ---TTPTLSPSQQPLPTELNVTSP-SKEECGPC 102
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 39.7 bits (91), Expect = 0.004 Identities = 27/93 (29%), Positives = 39/93 (41%) Frame = +1 Query: 181 CGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAVAVAHV 360 CGF+GS+ TMN+CSKC + KQ S+ +S D E + + +V Sbjct: 20 CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNS---QSDLFSEETTSDNNNTSV--- 73 Query: 361 QAKALITAQPADIXGPSEAAMESPKGPSRCSTC 459 T P+ P+E + SP C C Sbjct: 74 ---TTPTLSPSQQSLPTELNVTSP-SEEECGPC 102
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 39.7 bits (91), Expect = 0.004 Identities = 27/93 (29%), Positives = 39/93 (41%) Frame = +1 Query: 181 CGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAVAVAHV 360 CGF+GS+ TMN+CSKC + KQ S+ +S D E + + +V Sbjct: 20 CGFWGSSKTMNLCSKCFADFQKKQPDDDSTPSTSNS---QSDLFSEETTSDNNNTSV--- 73 Query: 361 QAKALITAQPADIXGPSEAAMESPKGPSRCSTC 459 T P+ P+E + SP C C Sbjct: 74 ---TTPTLSPSQQSLPTELNVTSP-STEECGPC 102
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 37.0 bits (84), Expect = 0.025 Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 7/108 (6%) Frame = +1 Query: 166 LCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAV 345 LC N+CGF G+ AT N+C C A A++S S ++ K+ + V Sbjct: 21 LCANSCGFPGNPATQNLCQNCF--------LAATASTSSPSSLSSPVLDKQPPRPAAPLV 72 Query: 346 -------AVAHVQAKALITAQPADIXGPSEAAMESPKGPSRCSTCRKR 468 A AL TA PA + S +RCS CRKR Sbjct: 73 EPQAPLPPPVEEMASALATA-PAPVAKTSAV--------NRCSRCRKR 111
>RABX5_HUMAN (Q9UJ41) Rab5 GDP/GTP exchange factor (Rabaptin 5-associated| exchange factor for Rab5) (Rabex-5) Length = 708 Score = 37.0 bits (84), Expect = 0.025 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 118 AMEHKETGCQSREGPILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKL 267 +++ + G + +LC CG++G+ A CSKC +E K Q ++ Sbjct: 140 SLKSERRGIHVDQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQI 189
>RABX5_MOUSE (Q9JM13) Rab5 GDP/GTP exchange factor (Rabex-5)| Length = 491 Score = 37.0 bits (84), Expect = 0.025 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 118 AMEHKETGCQSREGPILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKL 267 +++ + G + +LC CG++G+ A CSKC +E K Q ++ Sbjct: 2 SLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQRQI 51
>RABX5_BOVIN (O18973) Rab5 GDP/GTP exchange factor (Rabex-5)| Length = 492 Score = 37.0 bits (84), Expect = 0.025 Identities = 14/50 (28%), Positives = 26/50 (52%) Frame = +1 Query: 118 AMEHKETGCQSREGPILCVNNCGFFGSAATMNMCSKCHKEMAMKQEQAKL 267 +++ + G + +LC CG++G+ A CSKC +E K Q ++ Sbjct: 2 SLKSERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQI 51
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 33.5 bits (75), Expect = 0.28 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +1 Query: 178 NCGFFGSAATMNMCSKCHKEMAMKQEQAKLA 270 NC F+G A T + CS C++E ++ +A+ A Sbjct: 894 NCAFYGRAETEHFCSYCYREELRRRREARAA 924
>CEZ2_HUMAN (Q8TE49) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 32.0 bits (71), Expect = 0.80 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +1 Query: 178 NCGFFGSAATMNMCSKCHKEMAMKQEQAK 264 NC F+G A T + CS C++E ++ +A+ Sbjct: 894 NCAFYGRAETEHYCSYCYREELRRRREAR 922
>CEZ1_HUMAN (Q6GQQ9) Zinc finger A20 domain-containing protein 1 (EC 3.-.-.-)| (Cellular zinc finger anti-NF-kappa B protein) (Zinc finger protein Cezanne) Length = 843 Score = 31.2 bits (69), Expect = 1.4 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +1 Query: 178 NCGFFGSAATMNMCSKCHKEMAMKQEQ 258 NC F+G T N CS C++E ++E+ Sbjct: 806 NCSFYGHPETNNFCSCCYREELRRRER 832
>FA43B_HUMAN (Q6ZT52) Protein FAM43B| Length = 329 Score = 30.4 bits (67), Expect = 2.3 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Frame = +1 Query: 214 MCSKCHKEMAMKQ--EQAKLAA-SSFDSIVNGGDAV---KEHLAAGSTAVAVAHVQAKAL 375 + ++ HK A+ + Q LAA S F + DA ++HL AG A +V + L Sbjct: 180 LLARAHKARALARLLRQTALAAFSDFKRLQRQSDARHVRQQHLRAGGAAASVPRAPLRRL 239 Query: 376 ITAQPADIXGPSEAAMESPK 435 + A+ A PSE + +P+ Sbjct: 240 LNAKCAYRPPPSERSRGAPR 259
>TBCE_BOVIN (Q32KS0) Tubulin-specific chaperone E (Tubulin-folding cofactor E)| Length = 528 Score = 30.0 bits (66), Expect = 3.1 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +3 Query: 357 RSGEGADHRTAC*HRWSQRGGHGEPQRPKP 446 R G D+R A + W + GGH +P++ +P Sbjct: 379 RRGAELDYRKAFGNEWKKAGGHQDPEKNRP 408
>RS3_ENCCU (Q8SQM3) 40S ribosomal protein S3| Length = 228 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = +1 Query: 244 MKQEQAKLAASSFDSIVNGGDAVKEHLAAG----STAVAVAHVQAKALITAQPADIXGPS 411 +K ++AK +++ GDAVK+++ G T V +Q + ++ P + GP+ Sbjct: 153 LKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPN 212
>HXA13_HUMAN (P31271) Homeobox protein Hox-A13 (Hox-1J)| Length = 388 Score = 29.6 bits (65), Expect = 4.0 Identities = 25/88 (28%), Positives = 36/88 (40%) Frame = +1 Query: 196 SAATMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAVAVAHVQAKAL 375 +AA ++C MA A AAS++ S G+A AA + A A A A A Sbjct: 77 AAAAAAAANQCRNLMAHPAPLAPGAASAYSSAP--GEAPPSAAAAAAAAAAAAAAAAAA- 133 Query: 376 ITAQPADIXGPSEAAMESPKGPSRCSTC 459 + GP A + + +CS C Sbjct: 134 -----SSSGGPGPAGPAAAEAAKQCSPC 156
>TBCE_RAT (Q5FVQ9) Tubulin-specific chaperone E (Tubulin-folding cofactor E)| Length = 524 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 Query: 357 RSGEGADHRTAC*HRWSQRGGHGEPQRPKP 446 R G D+R A W + GGH +P R +P Sbjct: 375 RRGAELDYRKAFGKEWRKAGGHPDPDRNRP 404
>LCE1D_HUMAN (Q5T752) Late cornified envelope protein 1D (Late envelope protein| 4) Length = 114 Score = 29.3 bits (64), Expect = 5.2 Identities = 13/36 (36%), Positives = 17/36 (47%) Frame = +3 Query: 285 QHRQRWRCGERAPCCWQHSGGSCSRSGEGADHRTAC 392 +HR R + + CC Q SGGS G + H C Sbjct: 78 RHRSHRRRPQSSDCCSQPSGGSSCCGGGSSQHSGGC 113
>DNAK_CYAME (Q85FW4) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 607 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/70 (25%), Positives = 26/70 (37%) Frame = +1 Query: 205 TMNMCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAVAVAHVQAKALITA 384 T ++ +C K + AKL+ D +V L GST + K L+ Sbjct: 304 TSDLIERCRKPVEQALTDAKLSKQDIDEVV---------LVGGSTRIPAVQQLVKDLLGK 354 Query: 385 QPADIXGPSE 414 QP P E Sbjct: 355 QPNQSVNPDE 364
>TBCE_MOUSE (Q8CIV8) Tubulin-specific chaperone E (Tubulin-folding cofactor E)| Length = 524 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +3 Query: 357 RSGEGADHRTAC*HRWSQRGGHGEPQRPKP 446 R G D+R A + W + GGH +P + +P Sbjct: 375 RRGAELDYRKAFGNEWRKAGGHPDPDKNRP 404
>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)| Length = 1687 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +1 Query: 94 PLIS*LTKAME-HKETGCQSREGPILCVNNCG 186 P I+ KA+ H TGCQ R P+LC CG Sbjct: 842 PFITRREKALNLHSRTGCQGRREPLLC-PECG 872
>DNAK_PORUM (P69377) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 620 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/67 (29%), Positives = 25/67 (37%) Frame = +1 Query: 214 MCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAVAVAHVQAKALITAQPA 393 + KC + + AKL ASS D +V L GST + K LI P Sbjct: 305 LIDKCSIPVNNALKDAKLEASSIDEVV---------LVGGSTRIPAIQQMVKRLIGKDPN 355 Query: 394 DIXGPSE 414 P E Sbjct: 356 QSVNPDE 362
>DNAK_PORPU (P69376) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 620 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/67 (29%), Positives = 25/67 (37%) Frame = +1 Query: 214 MCSKCHKEMAMKQEQAKLAASSFDSIVNGGDAVKEHLAAGSTAVAVAHVQAKALITAQPA 393 + KC + + AKL ASS D +V L GST + K LI P Sbjct: 305 LIDKCSIPVNNALKDAKLEASSIDEVV---------LVGGSTRIPAIQQMVKRLIGKDPN 355 Query: 394 DIXGPSE 414 P E Sbjct: 356 QSVNPDE 362 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,467,328 Number of Sequences: 219361 Number of extensions: 1008063 Number of successful extensions: 3301 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3161 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3294 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
