ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25d10 |
|---|---|
| Clone Library Name | barley_pub |
>ASPG_DEIRA (Q9RRX9) Probable L-asparaginase (EC 3.5.1.1) (L-asparagine| amidohydrolase) (L-ASNase) Length = 322 Score = 35.8 bits (81), Expect = 0.11 Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 2/75 (2%) Frame = +3 Query: 111 HRAAPAHLRPSPRPLGLRQRIPPPLPG-ERVHL-PHQAGHLPRQRPQRRYMAVLAMAAQQ 284 H RPSP GL + PP LPG E V + HQ +LP +M LA +Q Sbjct: 12 HTGGTIASRPSPDGRGLTPQTPPALPGLEGVQVSEHQPFNLPSPHVTPAHMQQLAHLIEQ 71 Query: 285 LFPPHVRRQEVHGED 329 L H HG D Sbjct: 72 LAGGHDAVVVTHGTD 86
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 33.1 bits (74), Expect = 0.72 Identities = 31/133 (23%), Positives = 54/133 (40%) Frame = +3 Query: 162 RQRIPPPLPGERVHLPHQAGHLPRQRPQRRYMAVLAMAAQQLFPPHVRRQEVHGEDEGEA 341 + R+P P ++L QA +R Q + AV QQ H +Q H + + Sbjct: 1292 QHRLPMVNPTPDINLVMQA-----RRIQDQQRAVAVQLQQQQHQQHQHQQ--HPQQPQQQ 1344 Query: 342 AHVRGGLAEQEPXXXXXXXXXXXPEQREEEDSQTGIAHHLPRQGVPRHSRILLGAIPCRV 521 V+ + Q+ P+Q+++ Q + P+Q P+H ++ P + Sbjct: 1345 GQVQQQVVSQQQQQQHQ------PQQQQQPQQQQQLQQQQPQQQQPQHQQVQTPQ-PAQQ 1397 Query: 522 QLRQPQDPQHRAP 560 Q +QPQ Q P Sbjct: 1398 QPQQPQVTQQPPP 1410
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 32.0 bits (71), Expect = 1.6 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Frame = +3 Query: 165 QRIPPPLPGERVHLPHQAGHLPRQRPQR-RYMAVLAMAAQQLFPPHVRRQEVHGEDEGEA 341 Q P P P H PH+ LP Q PQR ++ A QL PPH + H + Sbjct: 375 QMHPQPSP----HTPHRPHGLP-QHPQRPQHPAPHPQQHSQLQPPHSQHPPPHQHIQHHP 429 Query: 342 AHVRGGLAEQEP 377 H LA Q P Sbjct: 430 NHQHQTLAHQPP 441
>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau| kinase) Length = 1321 Score = 31.2 bits (69), Expect = 2.7 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 12/57 (21%) Frame = +3 Query: 129 HLRPSPRPLGLRQ------RIPPPLPGERVHLPHQAGHLPRQR------PQRRYMAV 263 HL P P P L Q PP PG H P +G PR+R PQR+ +V Sbjct: 610 HLPPQPLPPQLSQGDGRSETSQPPTPGSPSHSPLHSGPRPRRRESDPTGPQRQVFSV 666
>JHD3_CAEEL (Q9U297) JmjC domain-containing histone demethylation protein 3 (EC| 1.14.11.-) (ceJMJD2) Length = 894 Score = 25.8 bits (55), Expect(2) = 3.5 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = +3 Query: 105 CPHRAAPAHLRPSPRPLGLRQRIPP 179 CP+R + PSPR R+PP Sbjct: 679 CPNRPGACFVEPSPRQQSETPRMPP 703 Score = 23.5 bits (49), Expect(2) = 3.5 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +1 Query: 295 PTFDARRFMERMRGKRLMFVGDSLNRNQWESLVC 396 P RR E R + +GD ++WE +VC Sbjct: 699 PRMPPRRLSEEYRAE----LGDLYENSRWECVVC 728
>SEY1_SCHPO (Q9UTE0) Protein sey1| Length = 762 Score = 30.8 bits (68), Expect = 3.6 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Frame = +1 Query: 232 ANGRNDDTWQYWQWQPNNCSLPTFDARRFMERMRGKRLMF----------VGDSLNRNQW 381 A+ R T W + NN + D R RG+ F + + N W Sbjct: 69 ASKRQQTTKGIWLSKANNSPILVMDVEGTDGRERGEDQDFERKSALFSISTSEVIIVNMW 128 Query: 382 ESLVCMVQSILSKGRKKIVKRGSLTIFHAKEYRATLEFYWAPFLVESNSDN 534 E+ V + Q + K V +L +FH K+ R L+F FL ++ +N Sbjct: 129 ENQVGLYQGS-NMALLKTVLEVNLQLFHNKKERCLLQFVIRDFLGNTSMEN 178
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 30.4 bits (67), Expect = 4.6 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 13/75 (17%) Frame = +3 Query: 135 RPSPRPLGLRQRIPPPLPGERVHLPHQAGHLPRQR--------PQRR---YMAVLAMAAQ 281 +P PRP R PPP P H PH A H P R P RR Y A L + Sbjct: 1375 QPPPRPPSPRYEAPPPTPHH--HSPH-AHHEPVLRLWGASPPDPARRELGYRAGLGSQEK 1431 Query: 282 QL--FPPHVRRQEVH 320 L PP RR +H Sbjct: 1432 SLPASPPAARRSLLH 1446
>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer| protein 3) (Cancer-amplified transcriptional coactivator ASC-2) (Activating signal cointegrator 2) (ASC-2) (Peroxisome proliferator-activated receptor-interacting protein) (P Length = 2063 Score = 30.4 bits (67), Expect = 4.6 Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 3/158 (1%) Frame = +3 Query: 138 PSPRPLGLRQRIPPPLPGER-VHLPHQAGHLPR--QRPQRRYMAVLAMAAQQLFPPHVRR 308 P RP GL + PPLPGE+ + L + LP RP + Q PP + Sbjct: 933 PDTRPAGLEEADQPPLPGEQGISLDNSGPKLPEFSNRPPGYPSQPVEQRPLQQMPPQL-M 991 Query: 309 QEVHGEDEGEAAHVRGGLAEQEPXXXXXXXXXXXPEQREEEDSQTGIAHHLPRQGVPRHS 488 Q V + + L +Q+ P+ ++++ Q + L Q P+ Sbjct: 992 QHVAPPPQPPQQQPQPQLPQQQ-----QPPPPSQPQSQQQQQQQQQMMMMLMMQQDPKSV 1046 Query: 489 RILLGAIPCRVQLRQPQDPQHRAPDHTA*EDRGARPVL 602 R +P + P+ P + + G+ PV+ Sbjct: 1047 R-----LPVSQNVHPPRGPLNPDSQRMPMQQSGSVPVM 1079
>HOG3_HORVU (P80198) Gamma-hordein-3| Length = 289 Score = 30.4 bits (67), Expect = 4.6 Identities = 19/59 (32%), Positives = 31/59 (52%) Frame = +3 Query: 135 RPSPRPLGLRQRIPPPLPGERVHLPHQAGHLPRQRPQRRYMAVLAMAAQQLFPPHVRRQ 311 +P P+ L Q+ P P ++ LPHQ P+Q PQ+++ + + QQ FP + Q Sbjct: 41 QPYPQQQPLPQQQPFP---QQPQLPHQH-QFPQQLPQQQFPQQMPLQPQQQFPQQMPLQ 95
>P85B_RAT (Q63788) Phosphatidylinositol 3-kinase regulatory beta subunit| (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta) Length = 722 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/54 (35%), Positives = 23/54 (42%) Frame = +3 Query: 135 RPSPRPLGLRQRIPPPLPGERVHLPHQAGHLPRQRPQRRYMAVLAMAAQQLFPP 296 RP PRP G P PLP + P ++GH LA A+Q PP Sbjct: 85 RPGPRPRG-----PRPLPARPLDGPSESGH------------TLASLAEQFSPP 121
>FA55D_HUMAN (Q6UWF7) Protein FAM55D precursor| Length = 544 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +1 Query: 271 WQPNNCSLPTFDARRFMERMRGKRLMFVGDSLNRNQWESLVCMVQSILS 417 W P +CSL T + E +RGK + +GDS R E + ++ S Sbjct: 325 WNPVSCSLATV---KMKECLRGKLIYLMGDSTIRQWMEYFKASINTLKS 370
>VCAP_EBV (P03226) Major capsid protein (MCP)| Length = 1381 Score = 29.6 bits (65), Expect = 7.9 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 11/70 (15%) Frame = +3 Query: 462 PRQGVPRHSRILLGAIPCRVQLRQPQDPQHRAPDH--------TA*EDRGARPVLE---G 608 PR P H+ L A P R+ QHR P+H +++ A PV + Sbjct: 462 PRLHTPAHTLNSLNAAPAPRDRRETYSLQHRRPNHMNVLVIVDEFYDNKYAAPVTDIALK 521 Query: 609 CGLPHLQHLH 638 CGLP LH Sbjct: 522 CGLPTEDFLH 531
>MLL3_MOUSE (Q8BRH4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) Length = 4903 Score = 29.6 bits (65), Expect = 7.9 Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 10/152 (6%) Frame = +3 Query: 138 PSPRPLGLRQRIPPPL-PGERVHLPHQAGHLPRQRPQRRYMAVLAMAAQQLFP------- 293 P P P R + PPL P V Q G P P+ M + + FP Sbjct: 2429 PPPYPGSTRSPVIPPLGPRYAVFPKDQRGPYP---PEVAGMGMRPHGFRFGFPGAGHGPM 2485 Query: 294 PHVRRQEVHGEDEGEAA--HVRGGLAEQEPXXXXXXXXXXXPEQREEEDSQTGIAHHLPR 467 P R V + +G H+R ++ + P P ++ G+ H P Sbjct: 2486 PSQDRFHVPQQIQGSGIPPHIRRPMSMEMPR----------PSNNPPLNNPVGLPQHFPP 2535 Query: 468 QGVPRHSRILLGAIPCRVQLRQPQDPQHRAPD 563 QG+P +LG ++LR HRAPD Sbjct: 2536 QGLPVQQHNILG--QAFIELR------HRAPD 2559 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,106,357 Number of Sequences: 219361 Number of extensions: 1739627 Number of successful extensions: 6784 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 6227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6748 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
