ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25d03 |
|---|---|
| Clone Library Name | barley_pub |
>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting| protein) Length = 778 Score = 31.6 bits (70), Expect = 1.1 Identities = 26/119 (21%), Positives = 43/119 (36%) Frame = +3 Query: 114 IRPSVSSRKGSMARCGRCSCSTP*LGSTGLTRWCLSRSTYLTLRIPPCWMEFMNALARLS 293 ++PS + G C R G + C L +PPC ++ A L Sbjct: 622 LQPSTQGQSGPPGPCPRVEL--------GASEPCTLEHRSLESSLPPCCSQWAPATTSLI 673 Query: 294 IKSRNAARKTEPTTSASILRPLERSCRVEEISCTVLRTSTLEESVLLCMARMDAFYVNR 470 S++ + P S LRP + ++ RT L E + C+ + F+ R Sbjct: 674 FSSQHPLCASPPICSLQSLRPPAGQAGLSNLA---PRTLALRERLKSCLTAIHCFHEAR 729
>DPO3A_BACSU (O34623) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1115 Score = 30.4 bits (67), Expect = 2.4 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 7/100 (7%) Frame = -1 Query: 280 RAFMNSIQHGGIRNVKYVDLDRHHRVSPVEP-------SHGVLQEHRPHLAIEPFLELTL 122 R+ + ++ G+ ++ V ++ +R P+E HG H PH + LE T Sbjct: 593 RSVLKRLKPSGLEDI--VAVNALYRPGPMENIPLFIDRKHGRAPVHYPHEDLRSILEDTY 650 Query: 121 GLIIAAKQPTSVVLRDCAPILIDCDVVRVALAXVQLGLVD 2 G+I+ +Q + R L + D++R A++ + ++D Sbjct: 651 GVIVYQEQIMMIASRMAGFSLGEADLLRRAVSKKKKEILD 690
>YGFF_ECOLI (P52037) Hypothetical oxidoreductase ygfF (EC 1.-.-.-)| Length = 247 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%) Frame = +2 Query: 29 KCDSYNVTIDEYGRTVSKNYTGGLLCCYDQT-QCQLKEGFNG 151 +C N+T + R +S N TG LCC + + LK G +G Sbjct: 93 QCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKNGGSG 134
>THI21_YEAST (Q08975) Phosphomethylpyrimidine kinase THI21 (EC 2.7.4.7)| (HMP-phosphate kinase) (HMP-P kinase) Length = 551 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 175 LQEHRPHLAIEPFLELTLGLIIAAKQPTSVVLRDCAP 65 L E+RP L ++P L T G +A K S++ AP Sbjct: 116 LGENRPKLVVDPVLVATSGSSLAGKDIASLITEKIAP 152
>THI20_YEAST (Q08224) Phosphomethylpyrimidine kinase THI20 (EC 2.7.4.7)| (HMP-phosphate kinase) (HMP-P kinase) Length = 551 Score = 29.3 bits (64), Expect = 5.3 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -1 Query: 175 LQEHRPHLAIEPFLELTLGLIIAAKQPTSVVLRDCAP 65 L E+RP L ++P L T G +A K S++ AP Sbjct: 116 LGENRPKLVVDPVLVATSGSSLAGKDIVSLITEKVAP 152
>POLR_TYMVC (P28477) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +1 Query: 295 SSRGMQHGKPSQQ-RVHPY*DH*SGLAAWRRYRVQCCAPALWRSRCFSAWPG 447 S H PS+ R+ PY D + W YR+ C L++ F+AW G Sbjct: 1080 SKDSSNHRLPSETLRLLPYID----MYCWWSYRIPQCIARLFQIHSFNAWQG 1127
>POLR_TYMVA (P20128) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +1 Query: 295 SSRGMQHGKPSQQ-RVHPY*DH*SGLAAWRRYRVQCCAPALWRSRCFSAWPG 447 S H PS+ R+ PY D + W YR+ C L++ F+AW G Sbjct: 1080 SKDSSNHRLPSETLRLLPYID----MYCWWSYRIPQCIARLFQIHSFNAWQG 1127
>POLR_TYMV (P10358) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1844 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Frame = +1 Query: 295 SSRGMQHGKPSQQ-RVHPY*DH*SGLAAWRRYRVQCCAPALWRSRCFSAWPG 447 S H PS+ R+ PY D + W YR+ C L++ F+AW G Sbjct: 1080 SKDSSNHRLPSETLRLLPYID----MYCWWSYRIPQCIARLFQIHSFNAWQG 1127
>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)| (AH antigen) Length = 3210 Score = 28.9 bits (63), Expect = 6.9 Identities = 22/73 (30%), Positives = 33/73 (45%) Frame = +3 Query: 195 TGLTRWCLSRSTYLTLRIPPCWMEFMNALARLSIKSRNAARKTEPTTSASILRPLERSCR 374 TG T + R T + R P AL+ LS+ N A ++PT S + ++ + R Sbjct: 3090 TGKTSPYILRRTTMATRTSPRLAAQKLALSPLSLGKENLAESSKPTAGGSRSQKVKVAQR 3149 Query: 375 VEEISCTVLRTST 413 S T+LR T Sbjct: 3150 SPVDSGTILREPT 3162
>DNAC_SHIFL (P0AEF3) DNA replication protein dnaC| Length = 245 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 258 WMEFMNALARLSIKSRNAARKTEPTTSASILRPLERSCRVE 380 W + A+ +++ N A K + T + S +RPL ++C E Sbjct: 32 WQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFE 72
>DNAC_ECOLI (P0AEF0) DNA replication protein dnaC| Length = 245 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 258 WMEFMNALARLSIKSRNAARKTEPTTSASILRPLERSCRVE 380 W + A+ +++ N A K + T + S +RPL ++C E Sbjct: 32 WQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFE 72
>DNAC_ECOL6 (P0AEF1) DNA replication protein dnaC| Length = 245 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 258 WMEFMNALARLSIKSRNAARKTEPTTSASILRPLERSCRVE 380 W + A+ +++ N A K + T + S +RPL ++C E Sbjct: 32 WQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFE 72
>DNAC_ECO57 (P0AEF2) DNA replication protein dnaC| Length = 245 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 258 WMEFMNALARLSIKSRNAARKTEPTTSASILRPLERSCRVE 380 W + A+ +++ N A K + T + S +RPL ++C E Sbjct: 32 WQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFE 72 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,085,903 Number of Sequences: 219361 Number of extensions: 1540211 Number of successful extensions: 4968 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4749 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4966 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
