ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd25d03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483551.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1691 Score = 111 bits (56), Expect = 2e-21 Identities = 167/204 (81%) Strand = Plus / Plus Query: 40 ttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacactggtgggtt 99 ||||||| | || ||||| ||||||||||||| | || | ||| |||||| |||||| || Sbjct: 618 ttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacattggtggttt 677 Query: 100 gctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatggcgaggtgcg 159 ||||||||||||| |||| ||||| || | |||||||| ||||| || ||| | || Sbjct: 678 atattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacggtgagctacg 737 Query: 160 gacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggtggtgcctgt 219 || | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| ||||| || Sbjct: 738 gaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggttgtgccagt 797 Query: 220 caagatctacatatttgacgttac 243 |||||| ||||||||||| ||||| Sbjct: 798 caagatttacatatttgatgttac 821 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 281 tgcaaggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgc 340 |||||||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||| Sbjct: 859 tgcaaggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgc 918 Query: 341 at 342 || Sbjct: 919 at 920
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 111 bits (56), Expect = 2e-21 Identities = 167/204 (81%) Strand = Plus / Plus Query: 40 ttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacactggtgggtt 99 ||||||| | || ||||| ||||||||||||| | || | ||| |||||| |||||| || Sbjct: 26912829 ttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacattggtggttt 26912888 Query: 100 gctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatggcgaggtgcg 159 ||||||||||||| |||| ||||| || | |||||||| ||||| || ||| | || Sbjct: 26912889 atattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacggtgagctacg 26912948 Query: 160 gacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggtggtgcctgt 219 || | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| ||||| || Sbjct: 26912949 gaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggttgtgccagt 26913008 Query: 220 caagatctacatatttgacgttac 243 |||||| ||||||||||| ||||| Sbjct: 26913009 caagatttacatatttgatgttac 26913032 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 285 aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 342 |||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||||| Sbjct: 26913206 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 26913263
>dbj|AP004592.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0666G10 Length = 150761 Score = 111 bits (56), Expect = 2e-21 Identities = 167/204 (81%) Strand = Plus / Plus Query: 40 ttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacactggtgggtt 99 ||||||| | || ||||| ||||||||||||| | || | ||| |||||| |||||| || Sbjct: 14229 ttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacattggtggttt 14288 Query: 100 gctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatggcgaggtgcg 159 ||||||||||||| |||| ||||| || | |||||||| ||||| || ||| | || Sbjct: 14289 atattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacggtgagctacg 14348 Query: 160 gacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggtggtgcctgt 219 || | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| ||||| || Sbjct: 14349 gaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggttgtgccagt 14408 Query: 220 caagatctacatatttgacgttac 243 |||||| ||||||||||| ||||| Sbjct: 14409 caagatttacatatttgatgttac 14432 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 285 aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 342 |||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||||| Sbjct: 14606 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 14663
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 111 bits (56), Expect = 2e-21 Identities = 167/204 (81%) Strand = Plus / Plus Query: 40 ttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacactggtgggtt 99 ||||||| | || ||||| ||||||||||||| | || | ||| |||||| |||||| || Sbjct: 175619 ttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacattggtggttt 175678 Query: 100 gctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatggcgaggtgcg 159 ||||||||||||| |||| ||||| || | |||||||| ||||| || ||| | || Sbjct: 175679 atattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacggtgagctacg 175738 Query: 160 gacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggtggtgcctgt 219 || | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| ||||| || Sbjct: 175739 gaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggttgtgccagt 175798 Query: 220 caagatctacatatttgacgttac 243 |||||| ||||||||||| ||||| Sbjct: 175799 caagatttacatatttgatgttac 175822 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 285 aggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgcat 342 |||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||||| Sbjct: 175996 aggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgcat 176053
>dbj|AK067831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121M08, full insert sequence Length = 1719 Score = 111 bits (56), Expect = 2e-21 Identities = 167/204 (81%) Strand = Plus / Plus Query: 40 ttacaacgtcacaatcgatgagtatgggcgcacagtctcgaagaactacactggtgggtt 99 ||||||| | || ||||| ||||||||||||| | || | ||| |||||| |||||| || Sbjct: 618 ttacaacatgacgatcgacgagtatgggcgcaaactcccaaaggactacattggtggttt 677 Query: 100 gctttgctgctatgatcagacccagtgtcagctcaaggaagggttcaatggcgaggtgcg 159 ||||||||||||| |||| ||||| || | |||||||| ||||| || ||| | || Sbjct: 678 atattgctgctatgatgagacgcagtgcaaggttaaggaaggtttcaacggtgagctacg 737 Query: 160 gacggtgttcttgcagtacaccgtgacttggctcgactggactgacgcggtggtgcctgt 219 || | ||||||||| |||||| ||||| ||||| ||||||| ||| ||||| ||||| || Sbjct: 738 gaagctgttcttgcggtacactgtgacgtggcttgactggagtgatgcggttgtgccagt 797 Query: 220 caagatctacatatttgacgttac 243 |||||| ||||||||||| ||||| Sbjct: 798 caagatttacatatttgatgttac 821 Score = 60.0 bits (30), Expect = 7e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 281 tgcaaggttgagtatcaagtcgaggaatgcagcacggaaaaccgagccaacaacgagtgc 340 |||||||||||||| ||||| ||||||||||| | |||||||| ||||| || |||||| Sbjct: 859 tgcaaggttgagtaccaagttgaggaatgcagtccagaaaaccgggccaagaatgagtgc 918 Query: 341 at 342 || Sbjct: 919 at 920
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 tcgaggaatgcagcacggaa 319 |||||||||||||||||||| Sbjct: 2899951 tcgaggaatgcagcacggaa 2899932
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gaagggttcaatggcgaggt 156 |||||||||||||||||||| Sbjct: 1140062 gaagggttcaatggcgaggt 1140081
>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence Length = 176901 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 406 ccagcactctggaggagtcggtgcttct 433 |||||||||||||||||| ||| ||||| Sbjct: 71904 ccagcactctggaggagtgggttcttct 71877
>gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, complete sequence Length = 171297 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 406 ccagcactctggaggagtcggtgcttct 433 |||||||||||||||||| ||| ||||| Sbjct: 6549 ccagcactctggaggagtgggttcttct 6576
>gb|AC063933.13| Homo sapiens 3 BAC RP11-566A3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168380 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 catccatactaagaccacta 359 |||||||||||||||||||| Sbjct: 74582 catccatactaagaccacta 74601
>gb|AC122918.4| Mus musculus chromosome 6 clone RP23-29F15, complete sequence Length = 210315 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 acccagtgtcagctcaagga 138 |||||||||||||||||||| Sbjct: 101908 acccagtgtcagctcaagga 101927
>gb|AC145948.5| Gallus gallus BAC clone CH261-24O17 from chromosome unknown, complete sequence Length = 242530 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 ctggaggagtcggtgcttct 433 |||||||||||||||||||| Sbjct: 76412 ctggaggagtcggtgcttct 76431
>emb|AL627204.7| Mouse DNA sequence from clone RP23-118E21 on chromosome 4, complete sequence Length = 142447 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 427 tgcttctctgcatggccagg 446 |||||||||||||||||||| Sbjct: 45846 tgcttctctgcatggccagg 45865 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,524,426 Number of Sequences: 3902068 Number of extensions: 2524426 Number of successful extensions: 44561 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44520 Number of HSP's gapped (non-prelim): 41 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
