ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | basd25d02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ083230.1| Oryza sativa (indica cultivar-group) clone 3B12G81 mRNA sequence Length = 449 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 51 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 110 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 111 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 170 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 171 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 230 Query: 311 acggtgg 317 | ||||| Sbjct: 231 atggtgg 237 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccg 509 |||||||| || || ||||||||||||||||| Sbjct: 404 aagagggttggtcttaccggattcaactgccg 435
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 24109401 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 24109460 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 24109461 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 24109520 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 24109521 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 24109580 Query: 311 acggtgg 317 | ||||| Sbjct: 24109581 atggtgg 24109587 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 24109754 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 24109813 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 24109814 cgctattccgataagcatgactgccagtttgacta 24109848 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 76 gggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||| Sbjct: 24108591 gggatcgccggagaggaatcgcg 24108613
>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417G12 Length = 163568 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 42859 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 42918 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 42919 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 42978 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 42979 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 43038 Query: 311 acggtgg 317 | ||||| Sbjct: 43039 atggtgg 43045 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 43212 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 43271 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 43272 cgctattccgataagcatgactgccagtttgacta 43306 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 76 gggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||| Sbjct: 42049 gggatcgccggagaggaatcgcg 42071
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 119094 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 119153 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 119154 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 119213 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 119214 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 119273 Query: 311 acggtgg 317 | ||||| Sbjct: 119274 atggtgg 119280 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 119447 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 119506 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 119507 cgctattccgataagcatgactgccagtttgacta 119541 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 76 gggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||| Sbjct: 118284 gggatcgccggagaggaatcgcg 118306
>dbj|AK104562.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-D03, full insert sequence Length = 999 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 145 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 204 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 205 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 264 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 265 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 324 Query: 311 acggtgg 317 | ||||| Sbjct: 325 atggtgg 331 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 498 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 557 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 558 cgctattccgataagcatgactgccagtttgacta 592 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||||| Sbjct: 72 aggggatcgccggagaggaatcgcg 96
>dbj|AK104605.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-A12, full insert sequence Length = 1009 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 145 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 204 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 205 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 264 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 265 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 324 Query: 311 acggtgg 317 | ||||| Sbjct: 325 atggtgg 331 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 498 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 557 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 558 cgctattccgataagcatgactgccagtttgacta 592 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||||| Sbjct: 72 aggggatcgccggagaggaatcgcg 96
>dbj|AK104175.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C11, full insert sequence Length = 1000 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 146 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 205 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 206 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 265 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 266 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 325 Query: 311 acggtgg 317 | ||||| Sbjct: 326 atggtgg 332 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 499 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 558 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 559 cgctattccgataagcatgactgccagtttgacta 593 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||||| Sbjct: 73 aggggatcgccggagaggaatcgcg 97
>dbj|AK069720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026K20, full insert sequence Length = 1209 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 143 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 202 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 203 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 262 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 263 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 322 Query: 311 acggtgg 317 | ||||| Sbjct: 323 atggtgg 329 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 496 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 555 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 556 cgctattccgataagcatgactgccagtttgacta 590 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||||| Sbjct: 70 aggggatcgccggagaggaatcgcg 94
>dbj|AK060008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C08, full insert sequence Length = 1021 Score = 204 bits (103), Expect = 2e-49 Identities = 166/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | || || |||||||||||| ||| Sbjct: 142 aagccatggagcacaaggagactggatgccagcagccagaaggcccgatcctttgcatca 201 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 202 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 261 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 262 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 321 Query: 311 acggtgg 317 | ||||| Sbjct: 322 atggtgg 328 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 495 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 554 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 555 cgctattccgataagcatgactgccagtttgacta 589 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcg 98 ||||||||||||||||||||||||| Sbjct: 69 aggggatcgccggagaggaatcgcg 93
>gb|AY345599.2| Oryza sativa (indica cultivar-group) stress-associated protein-3 (SAP-3) mRNA, complete cds Length = 1132 Score = 196 bits (99), Expect = 6e-47 Identities = 165/187 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||||| || |||||| | | || |||||||||||| ||| Sbjct: 56 aagccatggagcacaaggagactggatgccagcagccaaaaggcccgatcctttgcatca 115 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 |||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| Sbjct: 116 ataactgcggcttctttggcagtgcggctaccatgaacatgtgctcaaagtgccacaagg 175 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| |||||||||||||||||||||||||| ||||||||| | |||||||| |||| Sbjct: 176 agatgataatgaagcaggagcaggccaagctggcagcctcctctatcgacagcattgtca 235 Query: 311 acggtgg 317 | ||||| Sbjct: 236 atggtgg 242 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 409 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 468 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 469 cgctattccgataagcatgactgccagtttgacta 503
>gb|AY787873.1| Zea mays zinc finger protein (znf1) mRNA, complete cds Length = 1000 Score = 190 bits (96), Expect = 4e-45 Identities = 162/184 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||| | || |||||| | | ||||| || ||||| ||| ||| Sbjct: 86 aagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctgcatca 145 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 ataactgtggcttcttcggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 205 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| | ||||||||| |||||||||||||| ||||||||| | ||||||||||| | Sbjct: 206 agatgataacgaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtga 265 Query: 311 acgg 314 |||| Sbjct: 266 acgg 269 Score = 125 bits (63), Expect = 2e-25 Identities = 123/143 (86%) Strand = Plus / Plus Query: 459 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 518 |||||||||| ||||||| |||||||| || || || ||||||||||||||||| ||||| Sbjct: 429 ccggtgcagcgcctgcaggaagagggttggacttacgggattcaactgccggtgtgggaa 488 Query: 519 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 578 | | |||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 489 cttgtactgcgcactccaccgctactccgacaagcacgactgcaagttcgactaccggac 548 Query: 579 tgcggccatggacgccatcgcca 601 ||| |||| ||||||||| |||| Sbjct: 549 tgctgccagggacgccattgcca 571 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcgacgagggc 106 ||||||||| |||||||||||||| | |||||| Sbjct: 34 aggggatcgtcggagaggaatcgcaaagagggc 66
>gb|AY515607.1| Zea mays putative zinc finger protein ZmZf mRNA, complete cds Length = 1162 Score = 186 bits (94), Expect = 6e-44 Identities = 157/178 (88%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||| | || |||||| | | ||||| || ||||| ||| ||| Sbjct: 278 aagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctgcatca 337 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 ataactgtggcttcttcggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 397 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgt 308 ||||| | ||||||||| |||||||||||||| ||||||||| | ||||||||||| Sbjct: 398 agatgataacgaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgt 455 Score = 117 bits (59), Expect = 4e-23 Identities = 122/143 (85%) Strand = Plus / Plus Query: 459 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 518 |||||||||| ||||||| || ||||| || || || ||||||||||||||||| ||||| Sbjct: 621 ccggtgcagcgcctgcaggaaaagggttggacttacgggattcaactgccggtgtgggaa 680 Query: 519 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 578 | | |||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 681 cttgtactgcgcactccaccgctactccgacaagcacgactgcaagttcgactaccggac 740 Query: 579 tgcggccatggacgccatcgcca 601 ||| |||| ||||||||| |||| Sbjct: 741 tgctgccagggacgccattgcca 763
>gb|AY109331.1| Zea mays CL253_2 mRNA sequence Length = 2256 Score = 184 bits (93), Expect = 2e-43 Identities = 160/184 (86%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||| | || |||||| ||||| || ||||| ||| ||| Sbjct: 1082 aagccatggagcacaaggaggctgggtgccaggnnnnngagggacccatcctctgcatca 1141 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1142 ataactgtggcttcttcggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 1201 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| | ||||||||| |||||||||||||| ||||||||| | ||||||||||| | Sbjct: 1202 agatgataacgaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtga 1261 Query: 311 acgg 314 |||| Sbjct: 1262 acgg 1265 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 459 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 518 |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 1425 ccggtgcagcgcctgcaggaagagggttgggctcacgggattcaactgccggtgtgggaa 1484 Query: 519 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 578 | | ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 1485 cttgtactgcgcgctccaccgctactccgacaagcacgactgcaagttcgactaccggac 1544 Query: 579 tgcggccatggacgccatcgcca 601 ||| |||| ||||||||| |||| Sbjct: 1545 tgctgccagggacgccattgcca 1567 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcgacgagggc 106 ||||||||| |||||||||||||| | |||||| Sbjct: 1030 aggggatcgtcggagaggaatcgcaaagagggc 1062
>gb|BT016379.1| Zea mays clone Contig212 mRNA sequence Length = 1020 Score = 182 bits (92), Expect = 9e-43 Identities = 161/184 (87%) Strand = Plus / Plus Query: 131 aagccatggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtca 190 |||||||||||||||||||| | || |||||| | | ||||| || ||||| ||| ||| Sbjct: 102 aagccatggagcacaaggaggctgggtgccaggcccccgagggacccatcctctgcatca 161 Query: 191 ataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagg 250 ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 162 ataactgtggcttcttcggcagcgcggcgaccatgaacatgtgctctaagtgccacaagg 221 Query: 251 agatggcgatgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtca 310 ||||| | ||||||||| |||||||||||||| ||||||||| | ||||||||||| | Sbjct: 222 agatgataacgaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtga 281 Query: 311 acgg 314 |||| Sbjct: 282 acgg 285 Score = 149 bits (75), Expect = 1e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 459 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 518 |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 445 ccggtgcagcgcctgcaggaagagggttgggctcacgggattcaactgccggtgtgggaa 504 Query: 519 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 578 | | ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| | Sbjct: 505 cttgtactgcgcgctccaccgctactccgacaagcacgactgcaagttcgactaccggac 564 Query: 579 tgcggccatggacgccatcgcca 601 ||| |||| ||||||||| |||| Sbjct: 565 tgctgccagggacgccattgcca 587 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 74 aggggatcgccggagaggaatcgcgacgagggc 106 ||||||||| |||||||||||||| | |||||| Sbjct: 50 aggggatcgtcggagaggaatcgcaaagagggc 82
>ref|XM_506746.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1225_F07.15 mRNA Length = 1000 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | ||||| || ||||||||| |||||||| Sbjct: 161 atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataac 220 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 221 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 280 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 |||||| |||||||||||||||| || |||||||| Sbjct: 281 atcatgaaggaggagcaggccaagcttgctgcctcctc 318 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 469 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 528 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 506 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 565 Query: 529 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 588 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 566 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 625 Query: 589 gacgccatcgcca 601 || |||||||||| Sbjct: 626 gatgccatcgcca 638
>ref|XM_464458.1| Oryza sativa (japonica cultivar-group), mRNA Length = 991 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | ||||| || ||||||||| |||||||| Sbjct: 144 atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataac 203 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 263 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 |||||| |||||||||||||||| || |||||||| Sbjct: 264 atcatgaaggaggagcaggccaagcttgctgcctcctc 301 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 469 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 528 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 489 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 548 Query: 529 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 588 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 549 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 608 Query: 589 gacgccatcgcca 601 || |||||||||| Sbjct: 609 gatgccatcgcca 621
>dbj|AK061911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A06, full insert sequence Length = 991 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | ||||| || ||||||||| |||||||| Sbjct: 144 atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataac 203 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 263 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 |||||| |||||||||||||||| || |||||||| Sbjct: 264 atcatgaaggaggagcaggccaagcttgctgcctcctc 301 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 469 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 528 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 489 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 548 Query: 529 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 588 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 549 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 608 Query: 589 gacgccatcgcca 601 || |||||||||| Sbjct: 609 gatgccatcgcca 621
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Minus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | ||||| || ||||||||| |||||||| Sbjct: 5346557 atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataac 5346498 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5346497 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 5346438 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 |||||| |||||||||||||||| || |||||||| Sbjct: 5346437 atcatgaaggaggagcaggccaagcttgctgcctcctc 5346400 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Minus Query: 469 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 528 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 5346212 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 5346153 Query: 529 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 588 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 5346152 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 5346093 Query: 589 gacgccatcgcca 601 || |||||||||| Sbjct: 5346092 gatgccatcgcca 5346080
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1225_F07 Length = 142772 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Minus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | ||||| || ||||||||| |||||||| Sbjct: 72860 atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataac 72801 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72800 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 72741 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 |||||| |||||||||||||||| || |||||||| Sbjct: 72740 atcatgaaggaggagcaggccaagcttgctgcctcctc 72703 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Minus Query: 469 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 528 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 72515 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 72456 Query: 529 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 588 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 72455 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 72396 Query: 589 gacgccatcgcca 601 || |||||||||| Sbjct: 72395 gatgccatcgcca 72383
>dbj|AK067403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106E09, full insert sequence Length = 1000 Score = 178 bits (90), Expect = 1e-41 Identities = 141/158 (89%) Strand = Plus / Plus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | ||||| || ||||||||| |||||||| Sbjct: 161 atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataac 220 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 221 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 280 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 |||||| |||||||||||||||| || |||||||| Sbjct: 281 atcatgaaggaggagcaggccaagcttgctgcctcctc 318 Score = 105 bits (53), Expect = 2e-19 Identities = 113/133 (84%) Strand = Plus / Plus Query: 469 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 528 ||||| || |||||||| ||||| || |||||||||||||||||||| ||| | ||||| Sbjct: 506 acctgtaggaagagggttgggctgacgggattcaactgccggtgcggtaacatgtactgt 565 Query: 529 gcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgctgcggccatg 588 ||| |||||||||||| |||||||| || ||| ||||||||||||| ||||||| | | Sbjct: 566 gcgttgcaccgctactccgacaagcatgaatgccagttcgactaccggactgcggctagg 625 Query: 589 gacgccatcgcca 601 || |||||||||| Sbjct: 626 gatgccatcgcca 638
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1524_D08 Length = 143046 Score = 155 bits (78), Expect = 2e-34 Identities = 123/138 (89%) Strand = Plus / Minus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | ||||| || ||||||||| |||||||| Sbjct: 138 atggaacacaaggaggctggctgccagcagcccgagggcccaatcctttgcatcaataac 79 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 19 Query: 256 gcgatgaagcaggagcag 273 |||||| |||||||| Sbjct: 18 atcatgaaggaggagcag 1
>gb|AY105966.1| Zea mays PCO143261 mRNA sequence Length = 1035 Score = 155 bits (78), Expect = 2e-34 Identities = 138/158 (87%) Strand = Plus / Plus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| ||||||||||| | |||||| || ||||| ||| |||||||| Sbjct: 90 atggaacacaaggaggcgggctgccagcagccggagggcccaatcctatgcatcaataac 149 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 ||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| Sbjct: 150 tgcggcttcttcggcagtgctgcgacgatgaacatgtgctccaagtgccacaaggagatg 209 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 | |||||||||||||||| ||||||| |||||||| Sbjct: 210 ataacgaagcaggagcaggcccagctggctgcctcctc 247
>gb|BT017601.1| Zea mays clone EL01N0431H03.c mRNA sequence Length = 941 Score = 143 bits (72), Expect = 8e-31 Identities = 105/116 (90%) Strand = Plus / Plus Query: 199 ggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatggcg 258 |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 176 ggcttcttcggcagcgcggcgaccatgaacatgtgctctaagtgccacaaggagatgata 235 Query: 259 atgaagcaggagcaggccaagctggccgcctcctcttttgacagcatcgtcaacgg 314 | ||||||||| |||||||||||||| ||||||||| | ||||||||||| ||||| Sbjct: 236 acgaagcaggatcaggccaagctggctgcctcctctatcgacagcatcgtgaacgg 291 Score = 133 bits (67), Expect = 7e-28 Identities = 124/143 (86%) Strand = Plus / Plus Query: 459 ccggtgcagcacctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaa 518 |||||||||| ||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct: 451 ccggtgcagcgcctgcaggaagagggttgggctcacgggattcaactgccggtgtgggaa 510 Query: 519 cctctactgcgcgacgcaccgctactcggacaagcacgagtgcaagttcgactaccgcgc 578 | | ||||| ||| ||||| ||||| ||||||||||| ||||||||||||||||| | Sbjct: 511 cttgtactgggcgctccaccggtactccgacaagcacgactgcaagttcgactaccggac 570 Query: 579 tgcggccatggacgccatcgcca 601 ||| |||| ||||||||| |||| Sbjct: 571 tgctgccagggacgccattgcca 593
>gb|AY105867.1| Zea mays PCO143262 mRNA sequence Length = 984 Score = 139 bits (70), Expect = 1e-29 Identities = 136/158 (86%) Strand = Plus / Plus Query: 136 atggagcacaaggagacgggctgccagtcacgggagggtccgatcctttgcgtcaataac 195 ||||| ||||||||| | ||||||||| | |||||| || ||||| ||| |||||||| Sbjct: 89 atggaacacaaggaggccggctgccagcagccggagggcccaatcctatgcatcaataac 148 Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaaggagatg 255 || || |||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 149 tgtggtttctttggaagcgctgccaccatgaacatgtgctccaagtgccacaaggagatg 208 Query: 256 gcgatgaagcaggagcaggccaagctggccgcctcctc 293 |||||||||||||||||| || |||| |||||||| Sbjct: 209 ataatgaagcaggagcaggcccagttggctgcctcctc 246 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Plus Query: 502 aactgccggtgcgggaacctctactgcgcgacgcaccgctactcggacaagcacgagtgc 561 |||||||| ||||||||| ||||| ||| |||||||||||| ||||| ||||| ||| Sbjct: 461 aactgccgatgcgggaacacgtactgttcgatgcaccgctactccgacaaacacgactgc 520 Query: 562 aagttcgactaccgcgctgcggccatggacgccatcgcca 601 |||||||||| || |||| || | |||||| ||||||| Sbjct: 521 cagttcgactatcgaactgcagctagggacgctatcgcca 560
>dbj|AP006427.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45A23, TM0318, complete sequence Length = 117676 Score = 75.8 bits (38), Expect = 1e-10 Identities = 83/98 (84%) Strand = Plus / Minus Query: 184 tgcgtcaataactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 ||||||||||| || || |||||||| || ||||| |||||||||||||| |||||||| Sbjct: 54633 tgcgtcaataattgtggtttctttggaagggcggctaccatgaacatgtgttccaagtgt 54574 Query: 244 cacaaggagatggcgatgaagcaggagcaggccaagct 281 ||||||| ||| ||||||||||||||| |||||| Sbjct: 54573 tacaaggacatgctattgaagcaggagcaggacaagct 54536
>ref|NM_103998.2| Arabidopsis thaliana DNA binding / zinc ion binding AT1G51200 mRNA, complete cds Length = 1035 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 193 aactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagga 251 |||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| Sbjct: 217 aactgcggtttctttggaagcgctgccacaatgaacatgtgttctaagtgtcacaagga 275
>gb|BT015115.1| Arabidopsis thaliana At1g51200 gene, complete cds Length = 522 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 193 aactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagga 251 |||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| Sbjct: 61 aactgcggtttctttggaagcgctgccacaatgaacatgtgttctaagtgtcacaagga 119
>gb|AY056445.1| Arabidopsis thaliana At1g51200/F11M15_6 mRNA, complete cds Length = 898 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 193 aactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagga 251 |||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| Sbjct: 209 aactgcggtttctttggaagcgctgccacaatgaacatgtgttctaagtgtcacaagga 267
>emb|BX813820.1|CNS0AC5X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB41ZA07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 933 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 193 aactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagga 251 |||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| Sbjct: 133 aactgcggtttctttggaagcgctgccacaatgaacatgtgttctaagtgtcacaagga 191
>emb|BX841767.1|CNS09Y63 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB16ZD06 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 969 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 193 aactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagga 251 |||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| Sbjct: 191 aactgcggtttctttggaagcgctgccacaatgaacatgtgttctaagtgtcacaagga 249
>gb|BT001984.1| Arabidopsis thaliana expressed protein (At1g51200) mRNA, complete cds Length = 1032 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 193 aactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagga 251 |||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| Sbjct: 214 aactgcggtttctttggaagcgctgccacaatgaacatgtgttctaagtgtcacaagga 272
>dbj|AK062342.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-F03, full insert sequence Length = 631 Score = 54.0 bits (27), Expect = 5e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 478 aagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgcgcgacgcac 537 |||||||| || || ||||||||||||||||| || || ||| | |||||||| | |||| Sbjct: 137 aagagggttggtcttaccggattcaactgccgatgtggcaacttgtactgcgcaatgcac 196 Query: 538 cgctactcggacaagcacgagtgcaagttcgacta 572 ||||| || || ||||| || ||| |||| ||||| Sbjct: 197 cgctattccgataagcatgactgccagtttgacta 231
>gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete sequence Length = 105807 Score = 54.0 bits (27), Expect = 5e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 193 aactgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgccacaagga 251 |||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| Sbjct: 38341 aactgcggtttctttggaagcgctgccacaatgaacatgtgttctaagtgtcacaagga 38399
>ref|XM_482578.1| Oryza sativa (japonica cultivar-group), mRNA Length = 675 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 ||||||||||| ||||||| |||||||| ||| | |||||||||||| Sbjct: 73 tgcggcttcttcggcagcgaggcgaccaagaagctctgctccaagtgc 120 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 195 ctgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 |||||| ||||| |||||| || ||||| |||||||||||||||||| Sbjct: 252 ctgcgggttcttcggcagcaaggagaccaacaacatgtgctccaagtgc 300
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 ||||| ||||| ||||||| |||||||| |||| | |||||||||||| Sbjct: 16957964 tgcgggttcttcggcagcgaggcgaccaagaacctctgctccaagtgc 16958011 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 gaccatgaacatgtgctccaagtgc 243 ||||| ||||||||||||||||||| Sbjct: 16958170 gaccaagaacatgtgctccaagtgc 16958194
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 ||||||||||| ||||||| |||||||| ||| | |||||||||||| Sbjct: 21198319 tgcggcttcttcggcagcgaggcgaccaagaagctctgctccaagtgc 21198366 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 195 ctgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 |||||| ||||| |||||| || ||||| |||||||||||||||||| Sbjct: 21198498 ctgcgggttcttcggcagcaaggagaccaacaacatgtgctccaagtgc 21198546
>dbj|AP005393.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0488D02 Length = 154537 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 ||||| ||||| ||||||| |||||||| |||| | |||||||||||| Sbjct: 87777 tgcgggttcttcggcagcgaggcgaccaagaacctctgctccaagtgc 87824 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 gaccatgaacatgtgctccaagtgc 243 ||||| ||||||||||||||||||| Sbjct: 87983 gaccaagaacatgtgctccaagtgc 88007
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11 Length = 170723 Score = 48.1 bits (24), Expect = 0.034 Identities = 42/48 (87%) Strand = Plus / Plus Query: 196 tgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 ||||||||||| ||||||| |||||||| ||| | |||||||||||| Sbjct: 24596 tgcggcttcttcggcagcgaggcgaccaagaagctctgctccaagtgc 24643 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Plus Query: 195 ctgcggcttctttggcagcgcggcgaccatgaacatgtgctccaagtgc 243 |||||| ||||| |||||| || ||||| |||||||||||||||||| Sbjct: 24775 ctgcgggttcttcggcagcaaggagaccaacaacatgtgctccaagtgc 24823
>ref|NM_115140.2| Arabidopsis thaliana DNA binding / zinc ion binding AT3G52800 mRNA, complete cds Length = 1129 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 482 gggtcgggctcaccggattcaactgccggtgcgg 515 |||||||| | ||||||||||| ||||||||||| Sbjct: 602 gggtcgggttaaccggattcaagtgccggtgcgg 635
>gb|AC022342.3| Drosophila melanogaster clone BACR33N21, complete sequence Length = 179839 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 249 ggagatggcgatgaagcaggagcagg 274 ||||||||||||| |||||||||||| Sbjct: 10787 ggagatggcgatggagcaggagcagg 10812
>ref|XM_416311.1| PREDICTED: Gallus gallus similar to DIP13 beta; adaptor protein containing PH domain, PTB domain and leucine zipper motif 2 (LOC418075), mRNA Length = 3201 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 331 gagcaccttgctgctggcagcacagc 356 |||| ||||||||||||||||||||| Sbjct: 2268 gagccccttgctgctggcagcacagc 2293
>emb|AL353912.1|ATF3C22 Arabidopsis thaliana DNA chromosome 3, BAC clone F3C22 Length = 100028 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 482 gggtcgggctcaccggattcaactgccggtgcgg 515 |||||||| | ||||||||||| ||||||||||| Sbjct: 90635 gggtcgggttaaccggattcaagtgccggtgcgg 90668
>gb|AY072524.1| Arabidopsis thaliana zinc finger-like protein (At3g52800; F3C22_200) mRNA, complete cds Length = 541 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 482 gggtcgggctcaccggattcaactgccggtgcgg 515 |||||||| | ||||||||||| ||||||||||| Sbjct: 347 gggtcgggttaaccggattcaagtgccggtgcgg 380
>gb|AY042871.1| Arabidopsis thaliana zinc finger-like protein (F3C22_200) mRNA, complete cds Length = 871 Score = 44.1 bits (22), Expect = 0.52 Identities = 31/34 (91%) Strand = Plus / Plus Query: 482 gggtcgggctcaccggattcaactgccggtgcgg 515 |||||||| | ||||||||||| ||||||||||| Sbjct: 439 gggtcgggttaaccggattcaagtgccggtgcgg 472
>gb|AE003495.4| Drosophila melanogaster chromosome X, section 47 of 74 of the complete sequence Length = 314743 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 249 ggagatggcgatgaagcaggagcagg 274 ||||||||||||| |||||||||||| Sbjct: 157164 ggagatggcgatggagcaggagcagg 157189
>gb|AC093467.10| Mus musculus chromosome 12, clone RP23-9A4, complete sequence Length = 236969 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 gctgctggcagcacagcggtgg 361 |||||||||||||||||||||| Sbjct: 198806 gctgctggcagcacagcggtgg 198827
>gb|AC124471.4| Mus musculus BAC clone RP24-79D7 from 12, complete sequence Length = 179503 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 340 gctgctggcagcacagcggtgg 361 |||||||||||||||||||||| Sbjct: 8422 gctgctggcagcacagcggtgg 8443
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete sequence Length = 228603 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 331 gagcaccttgctgctggcagcacagc 356 |||| ||||||||||||||||||||| Sbjct: 79122 gagccccttgctgctggcagcacagc 79147
>gb|BT014337.1| Lycopersicon esculentum clone 133610F, mRNA sequence Length = 1026 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 223 atgaacatgtgctccaagtgccacaagga 251 |||||||||||||| |||||| ||||||| Sbjct: 114 atgaacatgtgctcaaagtgctacaagga 142
>emb|BX908807.1| Neurospora crassa DNA linkage group III BAC contig B13B7 Length = 93134 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 cagcgaggcggccatggagag 443 ||||||||||||||||||||| Sbjct: 87794 cagcgaggcggccatggagag 87774
>gb|AY106416.1| Zea mays PCO123428 mRNA sequence Length = 744 Score = 42.1 bits (21), Expect = 2.1 Identities = 66/81 (81%) Strand = Plus / Plus Query: 469 acctgcagaaagagggtcgggctcaccggattcaactgccggtgcgggaacctctactgc 528 |||||| | ||| |||| |||||||| || ||| |||||| ||||| |||||| |||| Sbjct: 33 acctgccgcaagcgggtggggctcacgggcttccgctgccgctgcggagacctcttctgc 92 Query: 529 gcgacgcaccgctactcggac 549 | ||||||||||||||||| Sbjct: 93 ggcgcgcaccgctactcggac 113
>gb|AF139499.1|AF139499 Prunus armeniaca p85RF mRNA, complete cds Length = 1031 Score = 42.1 bits (21), Expect = 2.1 Identities = 45/53 (84%) Strand = Plus / Plus Query: 229 atgtgctccaagtgccacaaggagatggcgatgaagcaggagcaggccaagct 281 ||||| ||||||||||||||||| ||| | |||| |||||||||| ||||| Sbjct: 209 atgtgttccaagtgccacaaggacatgatgttgaaagaggagcaggcaaagct 261
>ref|XM_527724.1| PREDICTED: Pan troglodytes similar to T-cell receptor gamma chain V region V108A precursor (LOC472349), mRNA Length = 1371 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ctgcggccatggacgccatc 597 |||||||||||||||||||| Sbjct: 447 ctgcggccatggacgccatc 466
>ref|NG_001336.2| Homo sapiens T cell receptor gamma locus (TRG@) on chromosome 7 Length = 140728 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ctgcggccatggacgccatc 597 |||||||||||||||||||| Sbjct: 62403 ctgcggccatggacgccatc 62422
>gb|AC006033.2| Homo sapiens BAC clone RP11-121A8 from 7, complete sequence Length = 171816 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 ctgcggccatggacgccatc 597 |||||||||||||||||||| Sbjct: 132444 ctgcggccatggacgccatc 132425
>emb|CR853300.3| Wallaby DNA sequence from clone MEKBa-585D22, complete sequence Length = 165531 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 463 tgcagcacctgcagaaagag 482 |||||||||||||||||||| Sbjct: 163125 tgcagcacctgcagaaagag 163144
>gb|AE005753.1| Caulobacter crescentus CB15 section 79 of 359 of the complete genome Length = 10329 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 agcaggccaagctggccgcc 288 |||||||||||||||||||| Sbjct: 2795 agcaggccaagctggccgcc 2776
>gb|AF159056.1|AF159056 Homo sapiens T-cell gamma receptor locus, complete sequence Length = 140691 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ctgcggccatggacgccatc 597 |||||||||||||||||||| Sbjct: 62398 ctgcggccatggacgccatc 62417
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 ggagatggcgatgaagcagg 268 |||||||||||||||||||| Sbjct: 2897761 ggagatggcgatgaagcagg 2897742
>dbj|AK053817.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130309P10 product:unclassifiable, full insert sequence Length = 3812 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 tggcagcacagcggtggcag 364 |||||||||||||||||||| Sbjct: 3100 tggcagcacagcggtggcag 3081
>gb|AC155640.5| Mus musculus 10 BAC RP24-87H21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 222712 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 tggcagcacagcggtggcag 364 |||||||||||||||||||| Sbjct: 182206 tggcagcacagcggtggcag 182225
>emb|AL671536.8| Mouse DNA sequence from clone RP23-291O10 on chromosome X, complete sequence Length = 221255 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 440 agagccccaaaggcccaagc 459 |||||||||||||||||||| Sbjct: 134084 agagccccaaaggcccaagc 134103
>gb|AC155881.2| Medicago truncatula chromosome 7 BAC clone mte1-60d3, complete sequence Length = 100208 Score = 40.1 bits (20), Expect = 8.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 220 accatgaacatgtgctccaagtgccacaagga 251 |||||||||||||| |||||||| ||||||| Sbjct: 14137 accatgaacatgtgttccaagtgttacaagga 14168
>gb|AC154040.7| Mus musculus 10 BAC RP23-348E15 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 210862 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 tggcagcacagcggtggcag 364 |||||||||||||||||||| Sbjct: 8400 tggcagcacagcggtggcag 8419
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 agcaccttgctgctggcagc 351 |||||||||||||||||||| Sbjct: 2924369 agcaccttgctgctggcagc 2924388 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,667,988 Number of Sequences: 3902068 Number of extensions: 3667988 Number of successful extensions: 71392 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 71068 Number of HSP's gapped (non-prelim): 322 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
