ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24n17 |
|---|---|
| Clone Library Name | barley_pub |
>RSP5_YEAST (P39940) E3 ubiquitin--protein ligase RSP5 (EC 6.3.2.-)| Length = 809 Score = 33.9 bits (76), Expect = 0.38 Identities = 38/159 (23%), Positives = 54/159 (33%), Gaps = 9/159 (5%) Frame = -3 Query: 489 STLKLAGMAPSPSLNRSTFFSQPCNKTVLSRKFLTISGSPFIRNAMALGTKSLTNTWS*F 310 ST + G + S + N ST S P T + + SG+ N +S +T S Sbjct: 161 STTRTNGHSTSSTRNHST--SHPSRGTAQAVESTLQSGTTAATNTATTSHRSTNSTSSAT 218 Query: 309 RTSSDAWSKAAMVPSGWPRKK---------TRERRRASQASPTMGWGSKEWSAEEAGVPT 157 R S + +P GW R+ R + PT+ E + Sbjct: 219 RQYSSFEDQYGRLPPGWERRTDNFGRTYYVDHNTRTTTWKRPTLDQTEAERGNQLNANTE 278 Query: 156 RERRPPPGEYMPSKXXXXPGVATGVGDVAERTVVEGALA 40 ERR G +P V VG + V GA A Sbjct: 279 LERRQHRGRTLPGGSSDNSSVTVQVGGGSNIPPVNGAAA 317
>CD2L7_HUMAN (Q9NYV4) Cell division cycle 2-related protein kinase 7 (EC| 2.7.11.22) (CDC2-related protein kinase 7) (Cdc2-related kinase, arginine/serine-rich) (CrkRS) Length = 1490 Score = 31.2 bits (69), Expect = 2.5 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Frame = -3 Query: 261 WPRKKTRERRRAS--QASPTMGWGSKEWSAEEAGVPTRERRPPPGEYMPSKXXXXPGVAT 88 W +K+ R+R+ + P KE ++ + P + P P + P K G A Sbjct: 1043 WSKKRRRQRQSGVVVEEPPPSKTSRKETTSGTSTEPVKNSSPAPPQPAPGKVESGAGDAI 1102 Query: 87 GVGDVAER 64 G+ D+ ++ Sbjct: 1103 GLADITQQ 1110
>CEMA_CHLVU (P56349) Chloroplast envelope membrane protein| Length = 266 Score = 31.2 bits (69), Expect = 2.5 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +2 Query: 290 HASEEVLNYDQVFVRDFVPSAMAFLMNGEPEIVKNFLLKTV 412 H EE + +D FV DF PS+ L EI KN+ L+++ Sbjct: 102 HQFEEKVYFDS-FVTDFAPSSNVLLQKQSVEIAKNYNLESI 141
>SKI_CHICK (P49140) Ski oncogene (C-ski)| Length = 750 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = -1 Query: 437 PSSPNPATKRS*AGSS*QSPARHSSETPWRWARNLSQTPGHSLGLPRMHGRKR 279 PS P + K S+ QSPA E W R+LS + S+G +H R+R Sbjct: 343 PSDPPASKKTKIDDSASQSPASTEKEKQSSWLRSLSSSSNKSIGC--VHPRQR 393
>CAC1H_HUMAN (O95180) Voltage-dependent T-type calcium channel alpha-1H subunit| (Voltage-gated calcium channel alpha subunit Cav3.2) (Low-voltage-activated calcium channel alpha1 3.2 subunit) Length = 2353 Score = 30.0 bits (66), Expect = 5.5 Identities = 24/72 (33%), Positives = 26/72 (36%) Frame = -3 Query: 294 AWSKAAMVPSGWPRKKTRERRRASQASPTMGWGSKEWSAEEAGVPTRERRPPPGEYMPSK 115 AW A G RKK S P GS SA E G T RR P E P + Sbjct: 2170 AWGPEAEPALGARRKKKMSPPCISVEPPAEDEGSARPSAAEGGSTTLRRRTPSCEATPHR 2229 Query: 114 XXXXPGVATGVG 79 P +G G Sbjct: 2230 DSLEPTEGSGAG 2241
>RPOA_CHRVO (Q7NQH7) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 327 Score = 30.0 bits (66), Expect = 5.5 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +2 Query: 428 EKKVDRFKLGEGAMPASFKVLHDDKKGVDTLHADFGESAIGRVA 559 E KV++ G G P S + HDD + + T+ D S + RV+ Sbjct: 142 EVKVEK---GRGYQPVSARTSHDDNRSIGTIQLDASFSPVRRVS 182
>ISPE_PARUW (Q6MAT6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 288 Score = 30.0 bits (66), Expect = 5.5 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%) Frame = +2 Query: 350 AMAFLMNGEPEIVKNFLLK----TVLLQGWEKKVDRFKLGEGAMPASFK 484 A AF + E +I+KN LL TVL+ G F +G+G +PASFK Sbjct: 220 ASAFEIKPELKILKNTLLSSGFDTVLMSGSGSSF--FCIGQGQIPASFK 266
>RS19_METMA (Q8PV46) 30S ribosomal protein S19P| Length = 136 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/61 (19%), Positives = 32/61 (52%) Frame = -2 Query: 433 LLPTLQQNGLEQEVLDNLRLAIHQKRHGAGHEISHKHLVIV*DFLGCMVESGDGTKRLAA 254 LLP+ ++ +++ D + +H+ + G H+ ++I+ + +G +E +G + + Sbjct: 37 LLPSRERRSIKRGFTDGQKKVLHEFKEGKKIRTHHRDMIILPEMIGIAIEVHNGKEFVNV 96 Query: 253 E 251 E Sbjct: 97 E 97
>RS19_METAC (Q8TRU3) 30S ribosomal protein S19P| Length = 136 Score = 29.3 bits (64), Expect = 9.4 Identities = 12/54 (22%), Positives = 29/54 (53%) Frame = -2 Query: 433 LLPTLQQNGLEQEVLDNLRLAIHQKRHGAGHEISHKHLVIV*DFLGCMVESGDG 272 LLP+ ++ L++ D + +H+ + G H+ ++I+ + +G +E +G Sbjct: 37 LLPSRERRSLKRGFTDGQKKVLHEFKEGKKIRTHHRDMIILPEMIGKTIEIHNG 90
>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral| proteinase B) (CANP B) [Contains: Calpain B catalytic subunit 1; Calpain B catalytic subunit 2] Length = 925 Score = 29.3 bits (64), Expect = 9.4 Identities = 16/40 (40%), Positives = 18/40 (45%) Frame = -3 Query: 252 KKTRERRRASQASPTMGWGSKEWSAEEAGVPTRERRPPPG 133 K+T + AS A PTMG G A A P P PG Sbjct: 67 KQTSHAQNASYAGPTMGMGMPVPEAPSAPAPYPSATPYPG 106
>IER5_HUMAN (Q5VY09) Immediate early response gene 5 protein| Length = 327 Score = 29.3 bits (64), Expect = 9.4 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 6/89 (6%) Frame = -3 Query: 270 PSGWPRKKTRERRRASQASPTMGWGSKEWSAEEAGVPTRERRPPPGEYMPSKXXXX---P 100 P+G P +++ A P GWG A A P E +P + Sbjct: 60 PAGTPAPPPQQQPGEPAAGPPAGWGEPPPPAARASWPETEPQPERSSVSDAPRVGDEVPV 119 Query: 99 GVATGVGDV---AERTVVEGALALDVXPR 22 TGVGDV E E A + PR Sbjct: 120 ATVTGVGDVFQGGEADATEAAWSRVEGPR 148 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,874,314 Number of Sequences: 219361 Number of extensions: 1890487 Number of successful extensions: 5890 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 5559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5872 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
