| Clone Name | basd25c16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BC029142.1| Homo sapiens, clone IMAGE:5196881, mRNA Length = 1061 Score = 729 bits (368), Expect = 0.0 Identities = 441/460 (95%), Gaps = 4/460 (0%) Strand = Plus / Plus Query: 3 cggttgtcgacagcgcccgccgatgtgtcggggtcgtcgtcaagtagcgatcgcgcgagg 62 ||||||||||||| |||||||||||||||||||||||||||||| ||||||| || |||| Sbjct: 429 cggttgtcgacagtgcccgccgatgtgtcggggtcgtcgtcaag-agcgatcacgtgagg 487 Query: 63 gcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgcta 122 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 488 gcttcacatgggccaaagacgaagattgcagatgtgatgacatctccagcaatcacgcta 547 Query: 123 tcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccacaga 182 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 548 tcatgcgataaaacagtgaccgatgccgcagctctgatgctcaggaagaagatccacaga 607 Query: 183 ttaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgttctt 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 ttaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgttctt 667 Query: 243 cgcgcgttggaggccatgctgaagttttagaggcgcaggagcccatgcccggtacttgtg 302 |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 668 cgcgcgttggaggccatgctgaagttttagagatgcaggagtccatgcccggtacttgtg 727 Query: 303 gatctgtaaatatgtgtgtccgcggtacttttgagtagcaggcagatcctatag-atgta 361 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct: 728 gatctgtaaatatgtgtgtccgcggtac-tttgagtagcaggcagatcctatagtctgta 786 Query: 362 aaagtgtttgtagcctgtatcgc-aaaaatatgcctgggagcatttaggagagcttttcc 420 |||||||||| || ||||||||| ||||||| |||||||||||||||||||||||||||| Sbjct: 787 aaagtgtttgcagtctgtatcgcaaaaaataagcctgggagcatttaggagagcttttcc 846 Query: 421 ttgtaaagaagcacgccaggaagattctgttctgtactgt 460 ||||||||||||||||||||||| ||||| |||||||||| Sbjct: 847 ttgtaaagaagcacgccaggaagcttctgctctgtactgt 886
>gb|AF498268.1| Haynaldia villosa clone kong28 mRNA Length = 1474 Score = 682 bits (344), Expect = 0.0 Identities = 426/448 (95%), Gaps = 4/448 (0%) Strand = Plus / Minus Query: 3 cggttgtcgacagcgcccgccgatgtgtcggggtcgtcgtcaagtagcgatcgcgcgagg 62 |||||||||||||||| ||| |||| |||||||||||||| ||| |||||| |||||||| Sbjct: 479 cggttgtcgacagcgctcgcagatgcgtcggggtcgtcgtgaag-agcgattgcgcgagg 421 Query: 63 gcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgcta 122 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 gcttcacatgggccaaagacgaagattgcagatgtgatgacatctccagcaatcacgcta 361 Query: 123 tcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccacaga 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 tcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccacaga 301 Query: 183 ttaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgttctt 242 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 300 ttaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgacgacgttctt 241 Query: 243 cgcgcgttggaggccatgctgaagttttagaggcgcaggagcccatgcccggtacttgtg 302 |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct: 240 cgcgcgttggaggccatgctgaagttttagagatgcaggagtccatgcccggtacttgtg 181 Query: 303 gatctgtaaatatgtgtgtccgcggtacttttgagtagcaggcagatcctatag-atgta 361 |||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| Sbjct: 180 gatctgtaaatatgtgtgtccgcggtgcttttgagtagcaggcagat-ctatagtctgta 122 Query: 362 aaagtgtttgtagcctgtatcgcaaaaatatgcctgggagcatttaggagagcttttcct 421 |||||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||| Sbjct: 121 aaagtg-ttgtagcctgtatcgcaaaaataagcctgggaacttttaggagagcttttcct 63 Query: 422 tgtaaagaagcacgccaggaagattctg 449 |||||||||||||||| ||||| ||||| Sbjct: 62 tgtaaagaagcacgcccggaagcttctg 35
>ref|XM_507550.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 916 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 477 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 536 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 537 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 596 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 597 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 656 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 657 cttcgcgagttggaagccctgctggaggtttaga 690
>ref|XM_507549.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 1002 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 477 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 536 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 537 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 596 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 597 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 656 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 657 cttcgcgagttggaagccctgctggaggtttaga 690
>ref|XM_507051.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_C12.20-2 mRNA Length = 956 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 483 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 542 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 543 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 602 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 603 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 662 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 663 cttcgcgagttggaagccctgctggaggtttaga 696
>ref|XM_468415.1| Oryza sativa (japonica cultivar-group), mRNA Length = 833 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 469 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 528 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 529 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 588 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 589 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 648 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 649 cttcgcgagttggaagccctgctggaggtttaga 682
>gb|AY346465.1| Oryza sativa (indica cultivar-group) putative brown planthopper susceptibility protein Hd002A mRNA, complete cds Length = 1265 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 901 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 960 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 961 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 1020 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 1021 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 1080 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 1081 cttcgcgagttggaagccctgctggaggtttaga 1114
>dbj|AK104947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G08, full insert sequence Length = 833 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 469 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 528 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 529 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 588 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 589 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 648 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 649 cttcgcgagttggaagccctgctggaggtttaga 682
>dbj|AK104525.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H03, full insert sequence Length = 994 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 469 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 528 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 529 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 588 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 589 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 648 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 649 cttcgcgagttggaagccctgctggaggtttaga 682
>dbj|AK104684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B10, full insert sequence Length = 916 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 477 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 536 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 537 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 596 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 597 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 656 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 657 cttcgcgagttggaagccctgctggaggtttaga 690
>dbj|AK104103.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B08, full insert sequence Length = 1002 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 477 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 536 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 537 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 596 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 597 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 656 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 657 cttcgcgagttggaagccctgctggaggtttaga 690
>dbj|AK071580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106O04, full insert sequence Length = 1514 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 470 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 529 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 530 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 589 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 590 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 649 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 650 cttcgcgagttggaagccctgctggaggtttaga 683
>dbj|AK065134.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P24, full insert sequence Length = 955 Score = 202 bits (102), Expect = 7e-49 Identities = 186/214 (86%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 482 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 541 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccac 179 ||| ||| || |||||||| | ||||| |||||||||||||| ||||||||||||||| Sbjct: 542 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaagatccac 601 Query: 180 agattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgtt 239 |||||||| || ||||| ||||||| ||||| ||||||||||||||||| | ||||||| Sbjct: 602 agattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgtt 661 Query: 240 cttcgcgcgttggaggccatgctgaagttttaga 273 ||||||| |||||| ||| ||||| || |||||| Sbjct: 662 cttcgcgagttggaagccctgctggaggtttaga 695
>gb|AY346466.1| Oryza sativa (indica cultivar-group) brown planthopper-induced resistance protein 1 (Bi1) mRNA, complete cds Length = 1098 Score = 188 bits (95), Expect = 1e-44 Identities = 186/215 (86%), Gaps = 1/215 (0%) Strand = Plus / Plus Query: 60 agggcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacg 119 |||||||| |||||||||| ||||||||||||||| |||||||| |||||||| ||||| Sbjct: 735 agggcttctcatgggtcaaagacgaagattgcagaagtgatgacctctccagccatcact 794 Query: 120 ctatcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaa-gatcca 178 ||| ||| || |||||||| | ||||| |||||||||||||| |||||||| |||||| Sbjct: 795 ctaccatctgacaaaacagtaatggatgcggcagctctgatgctaaagaagaaggatcca 854 Query: 179 cagattaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgt 238 ||||||||| || ||||| ||||||| ||||| ||||||||||||||||| | |||||| Sbjct: 855 cagattaccaattgtaaatcaggacagacaagtgataggtatagttacccgtgctgacgt 914 Query: 239 tcttcgcgcgttggaggccatgctgaagttttaga 273 |||||||| |||||| ||| ||||| || |||||| Sbjct: 915 tcttcgcgagttggaagccctgctggaggtttaga 949
>gb|AY112171.1| Zea mays CL11049_1 mRNA sequence Length = 803 Score = 141 bits (71), Expect = 2e-30 Identities = 220/270 (81%), Gaps = 1/270 (0%) Strand = Plus / Plus Query: 3 cggttgtcgacagcgcccgccgatgtgtcggggtcgtcgtcaagtagcgatcgcgcgagg 62 |||| |||||||||| || | |||| |||||||| |||||||| | ||| || || || Sbjct: 326 cggtcgtcgacagcggcctcagatgcgtcggggtgatcgtcaagaa-cgaccgggcaaga 384 Query: 63 gcttcacatgggtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgcta 122 || || |||||||| | ||||||||| | || ||||||||||||||||| ||||| ||| Sbjct: 385 gcctctcatgggtccaagacgaagatatcggaagtgatgacatctccagctatcacacta 444 Query: 123 tcatgcgataaaacagtgaccgatgccgcagctctgatgctcaagaagaagatccacaga 182 || | || ||||| |||| ||||| || | ||| |||||||||||||||||||||||| Sbjct: 445 tcgtctgacaaaaccgtgatggatgctgctgttctcatgctcaagaagaagatccacaga 504 Query: 183 ttaccgatagtaaaccaggacaatcaagtaataggtatagttacccgcgatgacgttctt 242 ||||| | |||||||||||| |||||||||||||||||||||| ||| |||||| Sbjct: 505 ttaccagttgtaaaccaggacgnnnnngtaataggtatagttacccgcgctgatgttctt 564 Query: 243 cgcgcgttggaggccatgctgaagttttag 272 |||| |||||| | |||| ||||| ||||| Sbjct: 565 cgcgtgttggaaggcatgttgaagatttag 594
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 144 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 203 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 35111716 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 35111775 Query: 204 aatcaagtaataggt 218 | ||||| |||||| Sbjct: 35111776 agacaagtgataggt 35111790 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 215 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 273 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 35111919 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 35111977 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 74 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 133 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 35111556 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 35111615 Query: 134 aacagt 139 |||||| Sbjct: 35111616 aacagt 35111621
>dbj|AP004048.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1202_E07 Length = 145014 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 144 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 203 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 7072 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 7131 Query: 204 aatcaagtaataggt 218 | ||||| |||||| Sbjct: 7132 agacaagtgataggt 7146 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 215 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 273 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 7275 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 7333 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 74 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 133 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 6912 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 6971 Query: 134 aacagt 139 |||||| Sbjct: 6972 aacagt 6977
>dbj|AP004028.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C12 Length = 103973 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Plus Query: 144 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 203 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 84879 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 84938 Query: 204 aatcaagtaataggt 218 | ||||| |||||| Sbjct: 84939 agacaagtgataggt 84953 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Plus Query: 215 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 273 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 85082 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 85140 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 74 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 133 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 84719 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 84778 Query: 134 aacagt 139 |||||| Sbjct: 84779 aacagt 84784
>dbj|AK068163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013135B04, full insert sequence Length = 4217 Score = 85.7 bits (43), Expect = 1e-13 Identities = 67/75 (89%) Strand = Plus / Minus Query: 144 gatgccgcagctctgatgctcaagaagaagatccacagattaccgatagtaaaccaggac 203 ||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |||||| Sbjct: 2474 gatgcggcagctctgatgctaaagaagaagatccacagattaccaattgtaaatcaggac 2415 Query: 204 aatcaagtaataggt 218 | ||||| |||||| Sbjct: 2414 agacaagtgataggt 2400 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 215 aggtatagttacccgcgatgacgttcttcgcgcgttggaggccatgctgaagttttaga 273 ||||||||||||||| | |||||||||||||| |||||| ||| ||||| || |||||| Sbjct: 2271 aggtatagttacccgtgctgacgttcttcgcgagttggaagccctgctggaggtttaga 2213 Score = 60.0 bits (30), Expect = 7e-06 Identities = 57/66 (86%) Strand = Plus / Minus Query: 74 gtcaaggacgaagattgcagatgtgatgacatctccagcaatcacgctatcatgcgataa 133 ||||| ||||||||||||||| |||||||| |||||||| ||||| ||| ||| || || Sbjct: 2634 gtcaaagacgaagattgcagaagtgatgacctctccagccatcactctaccatctgacaa 2575 Query: 134 aacagt 139 |||||| Sbjct: 2574 aacagt 2569
>gb|AC037492.5|AC037492 Homo sapiens chromosome 8, clone RP11-38H17, complete sequence Length = 168278 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 349 tcctatagatgtaaaagtgttt 370 |||||||||||||||||||||| Sbjct: 101188 tcctatagatgtaaaagtgttt 101167
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gtcgacagcgcccgccgatg 27 |||||||||||||||||||| Sbjct: 1917145 gtcgacagcgcccgccgatg 1917126
>ref|XM_841417.1| Trypanosoma brucei TREU927 hypothetical protein (Tb927.1.4760) partial mRNA Length = 3087 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 tcaagaagaagatccacaga 182 |||||||||||||||||||| Sbjct: 1397 tcaagaagaagatccacaga 1378
>gb|AC018738.4| Homo sapiens BAC clone RP11-419H23 from 2, complete sequence Length = 178530 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 agctctgatgctcaagaaga 171 |||||||||||||||||||| Sbjct: 171517 agctctgatgctcaagaaga 171536
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gtcgacagcgcccgccgatg 27 |||||||||||||||||||| Sbjct: 75856 gtcgacagcgcccgccgatg 75837
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 gtcgacagcgcccgccgatg 27 |||||||||||||||||||| Sbjct: 2567252 gtcgacagcgcccgccgatg 2567233
>gb|AF131950.1| Human papillomavirus candHPV85, complete genome Length = 7812 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 tttgtagcctgtatcgcaaa 387 |||||||||||||||||||| Sbjct: 3753 tttgtagcctgtatcgcaaa 3734
>gb|AC008750.9| Homo sapiens chromosome 19 clone CTD-2616J11, complete sequence Length = 143045 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ctgggagcatttaggagagc 414 |||||||||||||||||||| Sbjct: 76793 ctgggagcatttaggagagc 76812
>gb|AE004451.1| Pseudomonas aeruginosa PAO1, section 12 of 529 of the complete genome Length = 10700 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 230 cgatgacgttcttcgcgcgttggaggcc 257 |||||||||||||||||| ||| ||||| Sbjct: 2200 cgatgacgttcttcgcgccttgcaggcc 2227
>dbj|AP002347.3| Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2514A21, complete sequence Length = 130977 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ttgtggatctgtaaatatgt 317 |||||||||||||||||||| Sbjct: 119967 ttgtggatctgtaaatatgt 119986
>dbj|AP000790.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-736I10, complete sequence Length = 176944 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ttgtggatctgtaaatatgt 317 |||||||||||||||||||| Sbjct: 30103 ttgtggatctgtaaatatgt 30122 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,472,895 Number of Sequences: 3902068 Number of extensions: 3472895 Number of successful extensions: 59659 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59536 Number of HSP's gapped (non-prelim): 115 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)