ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones B... 452 e-124
2gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, ... 406 e-110
3gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial c... 70 9e-09
4gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, geno... 70 9e-09
5gb|AY141876.1| Triticum aestivum cultivar TAM104R gag polyprotei... 54 6e-04
6gb|AY143160.1| Triticum aestivum zinc finger protein mRNA, compl... 46 0.14
7gb|AC068768.31| Homo sapiens 12 BAC RP11-282O18 (Roswell Park Ca... 44 0.53
8gb|DQ017054.1| Rauvolfia verticillata strictosidine synthase mRN... 42 2.1
9ref|XM_758045.1| Theileria parva strain Muguga chromosome 3 hypo... 42 2.1
10emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on ch... 42 2.1
11emb|AL161786.12| Human DNA sequence from clone RP11-344L17 on ch... 42 2.1
12emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 42 2.1
13emb|X63431.1|RMSTR1G R.mannii str1 gene for strictosidine synthase 42 2.1
14emb|X62334.1|RSSTR1 R.serpentina str1 gene for strictosidine syn... 42 2.1
15dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
16gb|AC103882.5| Homo sapiens BAC clone RP11-733G6 from 2, complet... 42 2.1
17ref|XM_223690.3| PREDICTED: Rattus norvegicus poly(A) polymerase... 42 2.1
18emb|Y00756.1|RSSTRICT R.serpentina mRNA for strictosidine synthase 42 2.1
19emb|BX510308.15| Zebrafish DNA sequence from clone DKEY-108H8 in... 42 2.1
20gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
21emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005... 42 2.1
22emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.1
23ref|NM_125799.2| Arabidopsis thaliana unknown protein AT5G64030 ... 40 8.3
24gb|AC164101.4| Mus musculus BAC clone RP23-421F16 from chromosom... 40 8.3
25gb|AC004595.1| Homo sapiens BAC clone CTB-23M10 from 7, complete... 40 8.3
26emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4... 40 8.3
27gb|AC110422.3| Mus musculus BAC clone RP24-198G12 from 2, comple... 40 8.3
28gb|AC105446.4| Homo sapiens BAC clone RP11-395B7 from 7, complet... 40 8.3
29gb|AC144591.10| Medicago truncatula clone mth2-5f17, complete se... 40 8.3
30emb|AL513476.4| Human DNA sequence from clone CTD-2335J1 on chro... 40 8.3
31emb|AL355999.9| Human DNA sequence from clone RP11-249O6 on chro... 40 8.3
32gb|AY125524.1| Arabidopsis thaliana AT5g64030/MBM17_13 mRNA, com... 40 8.3
33gb|AC104945.4| Homo sapiens chromosome 8, clone RP11-384L9, comp... 40 8.3
34gb|AC011411.4| Homo sapiens chromosome 5 clone CTB-78O21, comple... 40 8.3
35gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Canc... 40 8.3
36gb|AC155282.1| Medicago truncatula chromosome 2 BAC clone mth2-6... 40 8.3
37gb|BT003013.1| Arabidopsis thaliana At5g64030/MBM17_13 gene, com... 40 8.3
38dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.3
39emb|AL844566.8| Mouse DNA sequence from clone RP23-173H17 on chr... 40 8.3
40gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Can... 40 8.3
41emb|AL773590.8| Mouse DNA sequence from clone RP23-181A13 on chr... 40 8.3
42dbj|AP004284.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.3 
>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
             locus region
          Length = 160897

 Score =  452 bits (228), Expect = e-124
 Identities = 502/592 (84%), Gaps = 1/592 (0%)
 Strand = Plus / Minus

                                                                         
Query: 7     atgatcttagaatggaaaatgatacattgctttctcaacagatcagtaccgcccaggaag 66
             |||||||| | |||||||||||| |||| ||  |||||||||||||  | || || |  |
Sbjct: 50033 atgatcttcgtatggaaaatgattcattactagctcaacagatcagcgctgctcaagctg 49974

                                                                         
Query: 67    aattcattccaccatgtgtgaaatgcatcaaacgtgaaactgctaattctgcacctgaaa 126
             |||||||||| |||||| | ||||||||  || | ||||||||||||||| |||| ||| 
Sbjct: 49973 aattcattcctccatgtcttaaatgcattgaatgcgaaactgctaattcttcaccagaat 49914

                                                                         
Query: 127   cctcaaatgcttctatcgctacaaactattcaactgttcatgtggtatcaaattcttcac 186
             | ||||||||||| ||  ||||||| | |||||||| || ||| || |||||||| | ||
Sbjct: 49913 catcaaatgcttcaatttctacaaattcttcaactgctcctgtagtgtcaaattcctaac 49854

                                                                         
Query: 187   ttgaggaaaccacaaaagctgccgacaaaaatgcagggttgaaggaattgtatatgacaa 246
             ||||||||| |||||| |   | |   ||||||||||| |||||||||||||| ||||| 
Sbjct: 49853 ttgaggaaaacacaaatgtcactggtgaaaatgcagggctgaaggaattgtatgtgacag 49794

                                                                         
Query: 247   gcatatacaaaagtctcaaagggcatcaaaccctttgcaatgttctcaaaaggcagattc 306
             ||||||||||||| |||||||| ||||||||||||||  |||| || |||| | ||||  
Sbjct: 49793 gcatatacaaaagcctcaaaggacatcaaaccctttgtgatgtgctaaaaaagaagatct 49734

                                                                         
Query: 307   tgaacaggaatccgaggaaaga-ggcattgccttcgagaggaaactggacgttgatggat 365
             |||||| ||| ||||||||||| || |||||||| ||||||||| |  | ||||||||||
Sbjct: 49733 tgaacatgaacccgaggaaagaaggaattgcctttgagaggaaattaaatgttgatggat 49674

                                                                         
Query: 366   catactggaaacctaagacttaccccaaaacctcatgggtagctgctaaagggcctccca 425
             | || ||||||||| |||  || ||||||||||||||||| |||||||  ||||||||  
Sbjct: 49673 cttattggaaacctgagaagtatcccaaaacctcatgggttgctgctactgggcctcctt 49614

                                                                         
Query: 426   ttgatccatccactctaataggctttgcatgtaaaatatcatattcctctgatgagtcat 485
             |||||||||||| |||||  |||||| ||||| || |||| |||||||| |||||||| |
Sbjct: 49613 ttgatccatccaatctaactggcttttcatgtgaactatcctattcctcagatgagtctt 49554

                                                                         
Query: 486   ttgactccaactataaactgttcaaaaatcaatctggtgaagtatttgctcgatatgttg 545
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49553 ttgactccaactataaactgttcaaaaatcaatctggtgaagtatttgctcgatatgttg 49494

                                                                 
Query: 546   gaactaactgcaggaatggacctcccctgaggaaaatctgggttcccaaaag 597
             ||||||||||||||||||| |||||| ||||||| |||| ||||||||||||
Sbjct: 49493 gaactaactgcaggaatggccctcccttgaggaatatctaggttcccaaaag 49442
to top
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence
          Length = 108608

 Score =  406 bits (205), Expect = e-110
 Identities = 452/533 (84%), Gaps = 1/533 (0%)
 Strand = Plus / Plus

                                                                         
Query: 66    gaattcattccaccatgtgtgaaatgcatcaaacgtgaaactgctaattctgcacctgaa 125
             ||||| ||||| |||||| | ||||||||  | |||||||||||||||||| |||| |||
Sbjct: 25495 gaatttattcctccatgtcttaaatgcattgatcgtgaaactgctaattcttcaccagaa 25554

                                                                         
Query: 126   acctcaaatgcttctatcgctacaaactattcaactgttcatgtggtatcaaattcttca 185
              | ||||||||| | |  ||||||||   ||||||||  | ||| || || | ||| |||
Sbjct: 25555 tcttcaaatgctaccactgctacaaatacttcaactgcacctgttgtgtctatttcctca 25614

                                                                         
Query: 186   cttgaggaaaccacaaaagctgccgacaaaaatgcagggttgaaggaattgtatatgaca 245
             |||||||||| |||||| ||  | ||  |||||||||||||||||||||||||  |||||
Sbjct: 25615 cttgaggaaaacacaaatgccactgatgaaaatgcagggttgaaggaattgtacgtgaca 25674

                                                                         
Query: 246   agcatatacaaaagtctcaaagggcatcaaaccctttgcaatgttctcaaaaggcagatt 305
              |||| |||||||| |||||||| ||||||| ||||||  |||| ||||||| |||||| 
Sbjct: 25675 tgcatgtacaaaagcctcaaaggacatcaaatcctttgtgatgtgctcaaaaagcagatc 25734

                                                                         
Query: 306   ctgaacaggaatccgaggaaaga-ggcattgccttcgagaggaaactggacgttgatgga 364
              |||||||||| ||||||||||| || |||||||||||||||||| || |   |||||||
Sbjct: 25735 ttgaacaggaacccgaggaaagaaggaattgccttcgagaggaaattgaatcctgatgga 25794

                                                                         
Query: 365   tcatactggaaacctaagacttaccccaaaacctcatgggtagctgctaaagggcctccc 424
             || || ||||||||| ||   || ||||||||||||||||| |||||||  |||||||| 
Sbjct: 25795 tcttattggaaacctgagcagtatcccaaaacctcatgggttgctgctactgggcctcct 25854

                                                                         
Query: 425   attgatccatccactctaataggctttgcatgtaaaatatcatattcctctgatgagtca 484
              |||||||||| | |||||  |||||  ||||| || |||| |||||||| |||||||||
Sbjct: 25855 tttgatccatctaatctaactggcttctcatgtgaattatcctattcctcggatgagtca 25914

                                                                         
Query: 485   tttgactccaactataaactgttcaaaaatcaatctggtgaagtatttgctcgatatgtt 544
             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25915 tttgattccaactataaactgttcaaaaatcaatctggtgaagtatttgctcgatatgtt 25974

                                                                  
Query: 545   ggaactaactgcaggaatggacctcccctgaggaaaatctgggttcccaaaag 597
             |||||||||||||||||||| ||||| |||| |||||||||||||| ||||||
Sbjct: 25975 ggaactaactgcaggaatggccctcctctgaagaaaatctgggttctcaaaag 26027



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                           
Query: 7     atgatcttagaatggaaaatgatacattgctttctcaacagatcag 52
             |||||||| | |||||||||||| |||| ||  |||||||||||||
Sbjct: 25436 atgatcttcgtatggaaaatgattcattactagctcaacagatcag 25481
to top
>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                          
Query: 252    tacaaaagtctcaaagggcatcaaaccctttgcaatgttctcaaaaggcagattctgaac 311
              |||||||| || ||||||||||| || || ||  |||| |||||||||||||||||||||
Sbjct: 210299 tacaaaagccttaaagggcatcagacactatgtgatgtcctcaaaaggcagattctgaac 210358

                                 
Query: 312    aggaatccgaggaaagagg 330
               | || |||||||||||||
Sbjct: 210359 tgaaacccgaggaaagagg 210377
to top
>gb|AY951944.1| Triticum monococcum TmBAC 21C6 FR-Am2 locus, genomic sequence
          Length = 190469

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 86/103 (83%)
 Strand = Plus / Plus

                                                                         
Query: 494   aactataaactgttcaaaaatcaatctggtgaagtatttgctcgatatgttggaactaac 553
             |||||||||||||| |||||||    |||||||||||||||  | ||  |||| ||||||
Sbjct: 68721 aactataaactgtttaaaaatctgaatggtgaagtatttgccaggtacattggtactaac 68780

                                                        
Query: 554   tgcaggaatggacctcccctgaggaaaatctgggttcccaaaa 596
             |||||||||||||| ||  ||| ||| ||||||||||| ||||
Sbjct: 68781 tgcaggaatggaccgcctatgaagaagatctgggttccaaaaa 68823



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 85/103 (82%)
 Strand = Plus / Plus

                                                                         
Query: 494   aactataaactgttcaaaaatcaatctggtgaagtatttgctcgatatgttggaactaac 553
             |||||||| ||||| || |||||   |||||||||||||||  | ||  |||| ||||||
Sbjct: 57431 aactataagctgtttaagaatcagaatggtgaagtatttgccaggtacattggtactaac 57490

                                                        
Query: 554   tgcaggaatggacctcccctgaggaaaatctgggttcccaaaa 596
             |||||||||||||| ||  ||| ||| ||||||||||| ||||
Sbjct: 57491 tgcaggaatggaccgcctatgaagaagatctgggttccaaaaa 57533



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 128/161 (79%), Gaps = 1/161 (0%)
 Strand = Plus / Plus

                                                                         
Query: 252   tacaaaagtctcaaagggcatcaaaccctttgcaatgttctcaaaaggcagattctgaac 311
             ||||||||||||||||| ||||| ||  | ||  |||| ||||| | |||||||||||||
Sbjct: 68478 tacaaaagtctcaaaggacatcagacattatgtgatgtcctcaagaagcagattctgaac 68537

                                                                         
Query: 312   aggaatccgaggaaaga-ggcattgccttcgagaggaaactggacgttgatggatcatac 370
              | || || |||||||| ||  |||  |||| ||||||| |  | |  |||||||| |||
Sbjct: 68538 cgaaaccctaggaaagagggtgttgggttcgtgaggaaaattaatgcagatggatcttac 68597

                                                      
Query: 371   tggaaacctaagacttaccccaaaacctcatgggtagctgc 411
             ||||||||| ||   |||||||||||| ||||||| |||||
Sbjct: 68598 tggaaacctgagcagtaccccaaaaccacatgggttgctgc 68638



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 128/161 (79%), Gaps = 1/161 (0%)
 Strand = Plus / Plus

                                                                         
Query: 252   tacaaaagtctcaaagggcatcaaaccctttgcaatgttctcaaaaggcagattctgaac 311
             ||||||||||||||||| ||||| ||  | ||  |||| ||||| | |||||||||||||
Sbjct: 57188 tacaaaagtctcaaaggacatcagacattatgtgatgtcctcaagaagcagattctgaac 57247

                                                                         
Query: 312   aggaatccgaggaaaga-ggcattgccttcgagaggaaactggacgttgatggatcatac 370
              | || || |||||||| ||  |||  |||| ||||||| |  | |  ||||| || |||
Sbjct: 57248 cgaaaccctaggaaagagggtgttgggttcgtgaggaaaattaatgcagatggctcttac 57307

                                                      
Query: 371   tggaaacctaagacttaccccaaaacctcatgggtagctgc 411
             ||||||||||||   |||||||||||| ||||||| |||||
Sbjct: 57308 tggaaacctaagcagtaccccaaaaccacatgggttgctgc 57348
to top
>gb|AY141876.1| Triticum aestivum cultivar TAM104R gag polyprotein mRNA, complete
            cds; and unknown mRNAs
          Length = 1290

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 66/79 (83%)
 Strand = Plus / Plus

                                                                        
Query: 26   tgatacattgctttctcaacagatcagtaccgcccaggaagaattcattccaccatgtgt 85
            |||| |||||||| ||||  |||||| | | || |||||||||||||||||||||||| |
Sbjct: 1211 tgattcattgcttgctcagtagatcattgctgctcaggaagaattcattccaccatgttt 1270

                               
Query: 86   gaaatgcatcaaacgtgaa 104
             || |||||  ||||||||
Sbjct: 1271 aaagtgcattgaacgtgaa 1289
to top
>gb|AY143160.1| Triticum aestivum zinc finger protein mRNA, complete cds
          Length = 1537

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 77/95 (81%)
 Strand = Plus / Plus

                                                                        
Query: 31   cattgctttctcaacagatcagtaccgcccaggaagaattcattccaccatgtgtgaaat 90
            |||| ||| ||||||| |||| | | || |||||||||||  |||| |||||| |||| |
Sbjct: 1342 cattacttgctcaacaaatcaatgctgctcaggaagaatttgttcctccatgtatgaagt 1401

                                               
Query: 91   gcatcaaacgtgaaactgctaattctgcacctgaa 125
            |||   || ||||| ||||||||||| ||||||||
Sbjct: 1402 gcactgaatgtgaatctgctaattcttcacctgaa 1436
to top
>gb|AC068768.31| Homo sapiens 12 BAC RP11-282O18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 87758

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 455   tgtaaaatatcatattcctctg 476
             ||||||||||||||||||||||
Sbjct: 30680 tgtaaaatatcatattcctctg 30659
to top
>gb|DQ017054.1| Rauvolfia verticillata strictosidine synthase mRNA, complete cds
          Length = 1035

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 177 aattcttcacttgaggaaacc 197
           |||||||||||||||||||||
Sbjct: 815 aattcttcacttgaggaaacc 795
to top
>ref|XM_758045.1| Theileria parva strain Muguga chromosome 3 hypothetical protein
           (TP03_0120) partial mRNA
          Length = 2303

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 484 atttgactccaactataaact 504
           |||||||||||||||||||||
Sbjct: 528 atttgactccaactataaact 548
to top
>emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on chromosome 6 Contains the
             3' end of the UTRN gene for utrophin (homologous to
             dystrophin), complete sequence
          Length = 201399

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 453   catgtaaaatatcatattcct 473
             |||||||||||||||||||||
Sbjct: 88419 catgtaaaatatcatattcct 88399
to top
>emb|AL161786.12| Human DNA sequence from clone RP11-344L17 on chromosome 9 Contains the
             5' end of a novel gene (MGC20553), complete sequence
          Length = 145676

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 571   cctgaggaaaatctgggttcc 591
             |||||||||||||||||||||
Sbjct: 86936 cctgaggaaaatctgggttcc 86916
to top
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 37      tttctcaacagatcagtaccg 57
               |||||||||||||||||||||
Sbjct: 1017681 tttctcaacagatcagtaccg 1017661
to top
>emb|X63431.1|RMSTR1G R.mannii str1 gene for strictosidine synthase
          Length = 1174

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 177 aattcttcacttgaggaaacc 197
           |||||||||||||||||||||
Sbjct: 811 aattcttcacttgaggaaacc 791
to top
>emb|X62334.1|RSSTR1 R.serpentina str1 gene for strictosidine synthase
          Length = 2242

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 177  aattcttcacttgaggaaacc 197
            |||||||||||||||||||||
Sbjct: 1361 aattcttcacttgaggaaacc 1341
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 230     ggaattgtatatgacaagcat 250
               |||||||||||||||||||||
Sbjct: 4720525 ggaattgtatatgacaagcat 4720505
to top
>gb|AC103882.5| Homo sapiens BAC clone RP11-733G6 from 2, complete sequence
          Length = 159249

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 187    ttgaggaaaccacaaaagctg 207
              |||||||||||||||||||||
Sbjct: 126774 ttgaggaaaccacaaaagctg 126794
to top
>ref|XM_223690.3| PREDICTED: Rattus norvegicus poly(A) polymerase gamma (predicted)
            (Papolg_predicted), mRNA
          Length = 3728

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 61   aggaagaattcattccaccat 81
            |||||||||||||||||||||
Sbjct: 3267 aggaagaattcattccaccat 3287
to top
>emb|Y00756.1|RSSTRICT R.serpentina mRNA for strictosidine synthase
          Length = 1215

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 177 aattcttcacttgaggaaacc 197
           |||||||||||||||||||||
Sbjct: 875 aattcttcacttgaggaaacc 855
to top
>emb|BX510308.15| Zebrafish DNA sequence from clone DKEY-108H8 in linkage group 3, complete
              sequence
          Length = 232247

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 468    attcctctgatgagtcatttg 488
              |||||||||||||||||||||
Sbjct: 220532 attcctctgatgagtcatttg 220552
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 230     ggaattgtatatgacaagcat 250
               |||||||||||||||||||||
Sbjct: 4720506 ggaattgtatatgacaagcat 4720486
to top
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 161762

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 230    ggaattgtatatgacaagcat 250
              |||||||||||||||||||||
Sbjct: 126606 ggaattgtatatgacaagcat 126626
to top
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147355

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 230   ggaattgtatatgacaagcat 250
             |||||||||||||||||||||
Sbjct: 31602 ggaattgtatatgacaagcat 31622
to top
>ref|NM_125799.2| Arabidopsis thaliana unknown protein AT5G64030 mRNA, complete cds
          Length = 3031

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  ctgttcaaaaatcaatctgg 522
            ||||||||||||||||||||
Sbjct: 2752 ctgttcaaaaatcaatctgg 2771
to top
>gb|AC164101.4| Mus musculus BAC clone RP23-421F16 from chromosome 8, complete sequence
          Length = 218236

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 570   ccctgaggaaaatctgggtt 589
             ||||||||||||||||||||
Sbjct: 76331 ccctgaggaaaatctgggtt 76312
to top
>gb|AC004595.1| Homo sapiens BAC clone CTB-23M10 from 7, complete sequence
          Length = 136170

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 571    cctgaggaaaatctgggttc 590
              ||||||||||||||||||||
Sbjct: 116872 cctgaggaaaatctgggttc 116853
to top
>emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4A, KEAP1, EDG8 and APG4D
              genes and partial FLJ12949 gene
          Length = 185331

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 384    cttaccccaaaacctcatgg 403
              ||||||||||||||||||||
Sbjct: 171314 cttaccccaaaacctcatgg 171333
to top
>gb|AC110422.3| Mus musculus BAC clone RP24-198G12 from 2, complete sequence
          Length = 111357

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 133   atgcttctatcgctacaaactattcaac 160
             |||||||||||||||||  |||||||||
Sbjct: 88753 atgcttctatcgctacagcctattcaac 88726
to top
>gb|AC105446.4| Homo sapiens BAC clone RP11-395B7 from 7, complete sequence
          Length = 139517

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 250    tatacaaaagtctcaaaggg 269
              ||||||||||||||||||||
Sbjct: 108947 tatacaaaagtctcaaaggg 108928
to top
>gb|AC144591.10| Medicago truncatula clone mth2-5f17, complete sequence
          Length = 128352

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 475   tgatgagtcatttgactccaactataaa 502
             |||| ||||||||||||||||| |||||
Sbjct: 41591 tgataagtcatttgactccaacaataaa 41618
to top
>emb|AL513476.4| Human DNA sequence from clone CTD-2335J1 on chromosome X, complete
            sequence
          Length = 18889

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 499  taaactgttcaaaaatcaat 518
            ||||||||||||||||||||
Sbjct: 4486 taaactgttcaaaaatcaat 4505
to top
>emb|AL355999.9| Human DNA sequence from clone RP11-249O6 on chromosome 1 Contains the
             3' end of the NPL gene for N-acetylneuraminate pyruvate
             lyase (dihydrodipicolinate synthase), the 5' end of the
             DHX9 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 9 and
             a CpG island, complete sequence
          Length = 76504

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    aaatgcatcaaacgtgaaac 106
             ||||||||||||||||||||
Sbjct: 33257 aaatgcatcaaacgtgaaac 33276
to top
>gb|AY125524.1| Arabidopsis thaliana AT5g64030/MBM17_13 mRNA, complete cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  ctgttcaaaaatcaatctgg 522
            ||||||||||||||||||||
Sbjct: 2590 ctgttcaaaaatcaatctgg 2609
to top
>gb|AC104945.4| Homo sapiens chromosome 8, clone RP11-384L9, complete sequence
          Length = 181328

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   ttcaactgttcatgtggtat 174
             ||||||||||||||||||||
Sbjct: 78095 ttcaactgttcatgtggtat 78076
to top
>gb|AC011411.4| Homo sapiens chromosome 5 clone CTB-78O21, complete sequence
          Length = 163864

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 492   ccaactataaactgttcaaa 511
             ||||||||||||||||||||
Sbjct: 13370 ccaactataaactgttcaaa 13351
to top
>gb|AC153823.5| Mus musculus 10 BAC RP23-11M21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 210101

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 107   tgctaattctgcacctgaaa 126
             ||||||||||||||||||||
Sbjct: 65597 tgctaattctgcacctgaaa 65578
to top
>gb|AC155282.1| Medicago truncatula chromosome 2 BAC clone mth2-63e12, complete
             sequence
          Length = 251117

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gttgaaggaattgtatatga 243
             ||||||||||||||||||||
Sbjct: 47742 gttgaaggaattgtatatga 47761
to top
>gb|BT003013.1| Arabidopsis thaliana At5g64030/MBM17_13 gene, complete cds
          Length = 2490

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  ctgttcaaaaatcaatctgg 522
            ||||||||||||||||||||
Sbjct: 2429 ctgttcaaaaatcaatctgg 2448
to top
>dbj|AB008266.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHJ24
          Length = 48622

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 503  ctgttcaaaaatcaatctgg 522
            ||||||||||||||||||||
Sbjct: 1602 ctgttcaaaaatcaatctgg 1621
to top
>emb|AL844566.8| Mouse DNA sequence from clone RP23-173H17 on chromosome 2, complete
              sequence
          Length = 229583

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 234    ttgtatatgacaagcatatacaaa 257
              ||||||||| ||||||||||||||
Sbjct: 101159 ttgtatatgccaagcatatacaaa 101182
to top
>gb|AC153943.3| Mus musculus 10 BAC RP24-408O23 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 171960

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    tgctaattctgcacctgaaa 126
              ||||||||||||||||||||
Sbjct: 162623 tgctaattctgcacctgaaa 162604
to top
>emb|AL773590.8| Mouse DNA sequence from clone RP23-181A13 on chromosome 2, complete
              sequence
          Length = 185348

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 133    atgcttctatcgctacaaactattcaac 160
              |||||||||||||||||  |||||||||
Sbjct: 119351 atgcttctatcgctacagcctattcaac 119378
to top
>dbj|AP004284.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1268B10
          Length = 145226

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    ttcaactgttcatgtggtat 174
              ||||||||||||||||||||
Sbjct: 127388 ttcaactgttcatgtggtat 127407


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,121,507
Number of Sequences: 3902068
Number of extensions: 6121507
Number of successful extensions: 120379
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120187
Number of HSP's gapped (non-prelim): 180
length of query: 612
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 589
effective length of database: 17,143,297,704
effective search space: 10097402347656
effective search space used: 10097402347656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top