ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24n09 |
|---|---|
| Clone Library Name | barley_pub |
>IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase inhibitor WIP1| precursor Length = 102 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Frame = +3 Query: 123 CCNNCR-SFSGVDVCDDAHPQCPTGCSACRVVT----TNPQTFRCADMKATVDGTCGGPC 287 CC NC SFSG+ CDD C C C V + FRC D T G CG C Sbjct: 46 CCTNCNFSFSGLYTCDDVKKDCDPVCKKCVVAVHASYSGNNKFRCTD---TFLGMCGPKC 102
>IBB1_ARAHY (P01066) Bowman-Birk type proteinase inhibitor A-II [Contains:| Bowman-Birk type proteinase inhibitor A-I; Bowman-Birk type proteinase inhibitor B-I; Bowman-Birk type proteinase inhibitor B-III] Length = 70 Score = 36.2 bits (82), Expect = 0.046 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 5/47 (10%) Frame = +3 Query: 123 CCNNCRSFSGVD-----VCDDAHPQCPTGCSACRVVTTNPQTFRCAD 248 CCN C VC D CP C++C +NP RC D Sbjct: 11 CCNGCLCDRRAPPYFECVCVDTFDHCPASCNSCVCTRSNPPQCRCTD 57
>PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS)| Length = 5045 Score = 32.0 bits (71), Expect = 0.87 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = -1 Query: 274 QVPSTVAFMSAQRNVWGFVV---TTRHAEQPVGHCGWASSQTST 152 Q+P T FMSA N + ++ TT E P G+ W +Q+ T Sbjct: 1869 QIPQTSVFMSASNNSYRALLPSDTTESLETPDGYVSWVLAQSGT 1912
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 30.8 bits (68), Expect = 1.9 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = +2 Query: 44 ARGDSDPPGRPGHGSPLARERRLFPH 121 A G PPG PG G+ L ++ +FPH Sbjct: 1753 APGGYGPPGMPGGGAQLVKKELIFPH 1778
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 30.8 bits (68), Expect = 1.9 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Frame = +3 Query: 132 NCRSFS-GVDVCDDAHPQC-------PTGCSACRVVTTNPQTFRCADMKATVDGTCGGP 284 NCR G +CD+ QC P C C+ PQTF C + + C GP Sbjct: 1480 NCRPCDCGARLCDELTGQCICPPRTIPPDCLLCQ-----PQTFGCHPLVGCEECNCSGP 1533
>IBBA_PEA (Q41065) Seed trypsin/chymotrypsin inhibitor IVA precursor (PSTI| IVA) (TI12-36) [Contains: Seed trypsin/chymotrypsin inhibitor I (PSTI I)] (Fragment) Length = 96 Score = 30.8 bits (68), Expect = 1.9 Identities = 13/37 (35%), Positives = 16/37 (43%) Frame = +3 Query: 165 DDAHPQCPTGCSACRVVTTNPQTFRCADMKATVDGTC 275 DD C C C +NP T RC D++ T C Sbjct: 26 DDVKSAC---CDTCLCTKSNPPTCRCVDVRETCHSAC 59 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 3/50 (6%) Frame = +3 Query: 108 DYFPTCCNNC---RSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCAD 248 D CC+ C +S C D C + C +C +NP +C D Sbjct: 27 DVKSACCDTCLCTKSNPPTCRCVDVRETCHSACDSCICAYSNPPKCQCFD 76
>MT_ASTFL (P55951) Metallothionein (MT)| Length = 58 Score = 30.4 bits (67), Expect = 2.5 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Frame = +3 Query: 123 CCNNCRSFSGVDVCDDAHPQCPTG--CSACRVVTTNPQTFRC-ADMKATVDGTCGGPCK 290 CCN DVC+ A C TG C++CR + T C K TC PC+ Sbjct: 5 CCN--------DVCECAAGGCKTGCVCTSCRCSPCDKCTSGCKCPSKEECAKTCSKPCE 55
>IBB_MEDSC (P80321) Bowman-Birk type proteinase inhibitor (MSTI)| Length = 62 Score = 30.4 bits (67), Expect = 2.5 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Frame = +3 Query: 123 CCNNC---RSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCADM 251 CC+ C RS C D +C + C +C + P RC D+ Sbjct: 8 CCDFCPCTRSIPPQCQCTDVREKCHSACKSCLCTRSFPPQCRCYDI 53
>IBB_DOLBI (Q9S9E3) Horsegram inhibitor 1 (Horsegram inhibitor I) (Bowman-Birk| type proteinase inhibitor HGI-I) [Contains: Horsegram germinated inhibitor 1 (Horsegram germinated inhibitor I) (HGGI-I); Horsegram germinated inhibitor 2 (Horsegram germinated Length = 76 Score = 30.4 bits (67), Expect = 2.5 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Frame = +3 Query: 123 CCNNCRSFSGVDV---CDDAH-PQCPTGCSACRVVTTNPQTFRCADMKATVDGTCGGPCK 290 CC+ C + C D C + CS+C + P C DMK C PCK Sbjct: 16 CCDQCTCTKSIPPQCRCTDVRLNSCHSACSSCVCTFSIPAQCVCVDMK----DFCYAPCK 71
>IBB3_DOLAX (P01057) Bowman-Birk type proteinase inhibitor DE-3| Length = 76 Score = 30.4 bits (67), Expect = 2.5 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Frame = +3 Query: 123 CCNNCRSFSGVDV---CDDAH-PQCPTGCSACRVVTTNPQTFRCADMKATVDGTCGGPCK 290 CC+ C + C D C + CS+C + P C DMK C PCK Sbjct: 16 CCDECACTKSIPPQCRCTDVRLNSCHSACSSCVCTFSIPAQCVCVDMK----DFCYAPCK 71
>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 30.4 bits (67), Expect = 2.5 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = +3 Query: 171 AHPQCPTGCSACRVVTTNPQTFRCADMKATVDGTCGG 281 A P CP G AC + ++ + C D A ++ +CGG Sbjct: 176 AVPACPKGLDACPIAGSSLGDYECLDTSAELE-SCGG 211
>IBB_LENCU (Q8W4Y8) Bowman-Birk type proteinase inhibitor precursor| (Trypsin/chymotrypsin inhibitor) Length = 110 Score = 30.0 bits (66), Expect = 3.3 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 3/50 (6%) Frame = +3 Query: 108 DYFPTCCNNC---RSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCAD 248 D CC+ C RS C D C + C C +NP +C D Sbjct: 45 DVKSACCDTCLCTRSQPPTCRCVDVRESCHSACDKCVCAYSNPPQCQCYD 94
>IBBWT_MEDSA (P16346) Bowman-Birk type wound-induced trypsin inhibitor| Length = 58 Score = 30.0 bits (66), Expect = 3.3 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 3/46 (6%) Frame = +3 Query: 123 CCNNC---RSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCADM 251 CCN C RS C D C + C C + P CAD+ Sbjct: 4 CCNFCPCTRSIPPQCRCTDIGETCHSACKTCLCTKSIPPQCHCADI 49
>MVHD_METTH (Q50781) F420-non-reducing hydrogenase iron-sulfur subunit D (EC| 1.12.99.-) (Methyl viologen-reducing hydrogenase delta subunit) (MVH subunit D) Length = 140 Score = 29.6 bits (65), Expect = 4.3 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 11/86 (12%) Frame = +3 Query: 123 CCNNCRSFSGVDVCDDAHPQCPTGCSACRVVTT---NPQ----TFRCADMKATVDGTCGG 281 CCN C S+ G D A Q PT RV+ + PQ FR V G G Sbjct: 11 CCNWC-SYGGADTAGTARMQYPTNIRVIRVMCSGRIEPQFVLKAFREGADGVLVTGCHHG 69 Query: 282 PCK----KY*SAQAHMRLLFRLAPKI 347 C Y MRL+++LA ++ Sbjct: 70 DCHYDAGNY-KLDRRMRLIYKLADEL 94
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 29.6 bits (65), Expect = 4.3 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 8/59 (13%) Frame = +3 Query: 132 NCRSFS-GVDVCDDAHPQC-------PTGCSACRVVTTNPQTFRCADMKATVDGTCGGP 284 NCR G +CD+ QC P C C+ PQ+F C + + C GP Sbjct: 1485 NCRPCDCGARLCDELTGQCICPPRTVPPDCLVCQ-----PQSFGCHPLVGCEECNCSGP 1538
>YBBO_ECOLI (P0AFP4) Hypothetical oxidoreductase ybbO (EC 1.-.-.-)| Length = 269 Score = 29.6 bits (65), Expect = 4.3 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = -1 Query: 217 VTTRHAEQPVGHCGWASSQTSTPEKDLQLLQHVGK*SAFTCE----RTPMTRTAWRIRIA 50 V +++PV + G A+ T PE + ++H AF E R P+T W + + Sbjct: 200 VNQTQSDKPVENPGIAARFTLGPEAVVDKVRH-----AFISEKPKMRYPVTLVTWAVMVL 254 Query: 49 ASLVPXMVADEL 14 L+P V D++ Sbjct: 255 KRLLPGRVMDKI 266
>YBBO_ECOL6 (P0AFP5) Hypothetical oxidoreductase ybbO (EC 1.-.-.-)| Length = 269 Score = 29.6 bits (65), Expect = 4.3 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = -1 Query: 217 VTTRHAEQPVGHCGWASSQTSTPEKDLQLLQHVGK*SAFTCE----RTPMTRTAWRIRIA 50 V +++PV + G A+ T PE + ++H AF E R P+T W + + Sbjct: 200 VNQTQSDKPVENPGIAARFTLGPEAVVDKVRH-----AFISEKPKMRYPVTLVTWAVMVL 254 Query: 49 ASLVPXMVADEL 14 L+P V D++ Sbjct: 255 KRLLPGRVMDKI 266
>PCSK5_BRACL (Q9NJ15) Proprotein convertase subtilisin/kexin type 5 precursor (EC| 3.4.21.-) (Proprotein convertase PC6-like) (aPC6) Length = 1696 Score = 29.3 bits (64), Expect = 5.6 Identities = 18/55 (32%), Positives = 20/55 (36%) Frame = +3 Query: 111 YFPTCCNNCRSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCADMKATVDGTC 275 Y TC C D D C GC AC N T C + +A DG C Sbjct: 954 YQGTCHVTCPPGLYGDTTDQVCKACAPGCIACDGPADNQCTL-CEEERAPTDGRC 1007
>IBBB_PEA (P56679) Seed trypsin/chymotrypsin inhibitor IVB (PSTI-IVB)| [Contains: Seed trypsin/chymotrypsin inhibitor II (PSTI II)] Length = 72 Score = 29.3 bits (64), Expect = 5.6 Identities = 13/37 (35%), Positives = 15/37 (40%) Frame = +3 Query: 165 DDAHPQCPTGCSACRVVTTNPQTFRCADMKATVDGTC 275 DD C C C +NP T RC D+ T C Sbjct: 2 DDVKSAC---CDTCLCTKSNPPTCRCVDVGETCHSAC 35
>LRP1_CHICK (P98157) Low-density lipoprotein receptor-related protein 1 precursor| (LRP) (Alpha-2-macroglobulin receptor) (A2MR) Length = 4543 Score = 29.3 bits (64), Expect = 5.6 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +3 Query: 126 CNNCRSFSGVDVCDDAHPQCPTGC---SACRVVTTNPQTFRC 242 CNN R S + VCD A C G S CR+ T + +F+C Sbjct: 2739 CNNHRCISKLWVCDGA-DDCGDGSDEDSRCRLTTCSTGSFQC 2779
>RS4_METTH (O26142) 30S ribosomal protein S4P| Length = 171 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%) Frame = -1 Query: 445 ETTVTKTRRNSIHIVG----HTHTHRQDESGHLIRAFIL--GAKRNNSL 317 ET V + RR++ +++G HT R+ GHL+R IL GAK + L Sbjct: 45 ETMVRRYRRDARYLLGMASEHTGKEREQLLGHLVRTGILNEGAKLEDVL 93
>RECQ5_HUMAN (O94762) ATP-dependent DNA helicase Q5 (EC 3.6.1.-) (RecQ| protein-like 5) (RecQ5) Length = 991 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Frame = +3 Query: 108 DYFPTCCNN--CRSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCADMKATVDGTCGG 281 D T C CR + DA P C GC C+ T + + ++ TC G Sbjct: 400 DALVTFCEELGCRHAAIAKYFGDALPACAKGCDHCQNPTAVRRRLEALERSSSWSKTCIG 459 Query: 282 P 284 P Sbjct: 460 P 460
>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor| Length = 680 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +2 Query: 50 GDSDPPGRPGHGSP 91 G S PPG+PG+GSP Sbjct: 75 GPSGPPGKPGYGSP 88
>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor| Length = 680 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/14 (71%), Positives = 12/14 (85%) Frame = +2 Query: 50 GDSDPPGRPGHGSP 91 G S PPG+PG+GSP Sbjct: 75 GPSGPPGKPGYGSP 88
>IBB_VICFA (P24661) Bowman-Birk type proteinase inhibitor (FBI)| Length = 63 Score = 28.5 bits (62), Expect = 9.6 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 3/50 (6%) Frame = +3 Query: 108 DYFPTCCNNC---RSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCAD 248 D CC+ C +S C D +C + C++C +NP +C D Sbjct: 3 DVKSACCDTCLCTKSEPPTCRCVDVGERCHSACNSCVCRYSNPPKCQCFD 52
>IBB_VICAN (P01065) Bowman-Birk type proteinase inhibitor (VAI)| Length = 72 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%) Frame = +3 Query: 108 DYFPTCCNNC---RSFSGVDVCDDAHPQCPTGCSACRVVTTNPQTFRCAD 248 D CC+ C RS C D +C + C+ C +NP +C D Sbjct: 3 DVKSACCDTCLCTRSQPPTCRCVDVGERCHSACNHCVCNYSNPPQCQCFD 52
>IBB2_ARAHY (P01067) Bowman-Birk type proteinase inhibitor B-II| Length = 63 Score = 28.5 bits (62), Expect = 9.6 Identities = 10/29 (34%), Positives = 12/29 (41%) Frame = +3 Query: 162 CDDAHPQCPTGCSACRVVTTNPQTFRCAD 248 C D CP C+ C + P RC D Sbjct: 23 CGDTFDHCPAACNKCVCTRSIPPQCRCTD 51
>D11_DICDI (P05817) Prestalk D11 protein precursor| Length = 282 Score = 28.5 bits (62), Expect = 9.6 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 7/74 (9%) Frame = +3 Query: 96 HVNADYFPTCCNNCRSFSGV------DVCDDAHPQCPTGCSACRVVTTNPQTFRCADMKA 257 H + +CC C + V C D + PTGC C + T P C+ +K Sbjct: 40 HYRLNMTDSCCGRCEPCTDVACTLQVKYCQDG--EVPTGCCPCTLPPTKPD---CSLVK- 93 Query: 258 TVDGTCGGP-CKKY 296 C P CK Y Sbjct: 94 -----CATPVCKPY 102 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,692,646 Number of Sequences: 219361 Number of extensions: 1313550 Number of successful extensions: 4157 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3732 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4152 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
