ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd24m22 |
|---|---|
| Clone Library Name | barley_pub |
>DUS8_MOUSE (O09112) Dual specificity protein phosphatase 8 (EC 3.1.3.48) (EC| 3.1.3.16) (Neuronal tyrosine threonine phosphatase 1) Length = 663 Score = 33.1 bits (74), Expect = 0.66 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Frame = +3 Query: 18 PAPAPGKLCSLLLPSS--------------TVPAVRPTPYRKQPPPSSLLHQTRCGFSIH 155 P AP KLC L PS +VP RP P R++PP SS G ++ Sbjct: 418 PGEAP-KLCKLDSPSGGTLGLPSPSPDSPDSVPECRPRPRRRRPPASSPARSPAHGLGLN 476 Query: 156 IPETLSGQQRENLREALSSCG 218 +T R L ALS+ G Sbjct: 477 FGDTARQTPRHGL-SALSAPG 496
>UL51_PRVKA (Q85227) Protein UL51| Length = 236 Score = 31.6 bits (70), Expect = 1.9 Identities = 17/36 (47%), Positives = 17/36 (47%) Frame = +3 Query: 6 RRRLPAPAPGKLCSLLLPSSTVPAVRPTPYRKQPPP 113 RRR PAP L LP PA R T R PPP Sbjct: 156 RRRQPAPVRAAPAGLGLPVPAQPAPRATAARPAPPP 191
>MDM4_MOUSE (O35618) Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like| p53-binding protein) (Mdmx protein) (Double minute 4 protein) Length = 489 Score = 31.2 bits (69), Expect = 2.5 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +2 Query: 458 HLPTLFHCPRGTTGEEASCPACR 526 HL T FHC R ASCP C+ Sbjct: 455 HLTTCFHCARRLKKSGASCPVCK 477
>DVL2_MOUSE (Q60838) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 31.2 bits (69), Expect = 2.5 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Frame = +3 Query: 21 APAPGKLCSLLLPSSTVPAVRPTPYRKQPPPSSLLHQTRCGFSIHIPETLSGQQRENLRE 200 AP PG LLP+ + P PY QPPP L G + S Q E R Sbjct: 537 APLPGATPWPLLPTFSYQYPAPHPYSPQPPPYHELSSYTYGGG-----SASSQHSEGSRS 591 Query: 201 ALSSCGRGADDR----DQRSPGS*LFPGSQ 278 + S+ G R ++R+P S GS+ Sbjct: 592 SGSTRSDGGAGRTGRPEERAPESKSGSGSE 621
>DVL2_HUMAN (O14641) Segment polarity protein dishevelled homolog DVL-2| (Dishevelled-2) (DSH homolog 2) Length = 736 Score = 31.2 bits (69), Expect = 2.5 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Frame = +3 Query: 21 APAPGKLCSLLLPSSTVPAVRPTPYRKQPPPSSLLHQTRCGFSIHIPETLSGQQRENLRE 200 AP PG LLP+ + P PY QPPP L G + S Q E R Sbjct: 537 APLPGATPWPLLPTFSYQYPAPHPYSPQPPPYHELSSYTYGGG-----SASSQHSEGSRS 591 Query: 201 ALSSCGRGADDR----DQRSPGS*LFPGSQ 278 + S+ G R ++R+P S GS+ Sbjct: 592 SGSTRSDGGAGRTGRPEERAPESKSGSGSE 621
>PSPB_RAT (P22355) Pulmonary surfactant-associated protein B precursor (SP-B)| (Pulmonary surfactant-associated proteolipid SPL(Phe)) Length = 376 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/30 (50%), Positives = 15/30 (50%) Frame = +2 Query: 455 LHLPTLFHCPRGTTGEEASCPACRDSPSFW 544 L LPTL C G E AS P C P FW Sbjct: 10 LLLPTL--CSLGAATESASSPDCAQGPKFW 37
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 30.0 bits (66), Expect = 5.6 Identities = 15/34 (44%), Positives = 18/34 (52%) Frame = +3 Query: 15 LPAPAPGKLCSLLLPSSTVPAVRPTPYRKQPPPS 116 LP APG S SS+ P +RPTP + PS Sbjct: 827 LPHGAPGPAASTRPASSSTPRLRPTPAARAAAPS 860
>MDM4_HUMAN (O15151) Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like| p53-binding protein) (Mdmx protein) (Double minute 4 protein) Length = 490 Score = 30.0 bits (66), Expect = 5.6 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +2 Query: 458 HLPTLFHCPRGTTGEEASCPACR 526 HL T FHC R ASCP C+ Sbjct: 456 HLVTCFHCARRLKKAGASCPICK 478
>ILVD_BRUSU (Q8G353) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 611 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 426 KKAMLDFSSLSISQPSSTAQEEPRVKKLLVQ-HVETVHHSGAVEDVLHSLLHSGLSTKEI 602 ++A +DF+ I + S +V + H+E VHH+G + +L L ++GL T I Sbjct: 290 QEAEIDFTMADIDRLSRRVPVLCKVAPAVSSVHMEDVHHAGGIMGILGQLDNAGLLTTSI 349
>ILVD_BRUME (Q8YEN0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 611 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 426 KKAMLDFSSLSISQPSSTAQEEPRVKKLLVQ-HVETVHHSGAVEDVLHSLLHSGLSTKEI 602 ++A +DF+ I + S +V + H+E VHH+G + +L L ++GL T I Sbjct: 290 QEAEIDFTMADIDRLSRRVPVLCKVAPAVSSVHMEDVHHAGGIMGILGQLDNAGLLTTSI 349
>ILVD_BRUAB (Q57FS2) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 611 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 426 KKAMLDFSSLSISQPSSTAQEEPRVKKLLVQ-HVETVHHSGAVEDVLHSLLHSGLSTKEI 602 ++A +DF+ I + S +V + H+E VHH+G + +L L ++GL T I Sbjct: 290 QEAEIDFTMADIDRLSRRVPVLCKVAPAVSSVHMEDVHHAGGIMGILGQLDNAGLLTTSI 349
>MB11_ARATH (Q9SAV1) Myrosinase-binding protein-like At1g52030 (MBP)| Length = 642 Score = 29.3 bits (64), Expect = 9.5 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +3 Query: 18 PAPAPGKLCSLLLPSSTVPAVRPTPYRKQPPPSSL 122 PAPAP S S+ VPA PTP PP+ + Sbjct: 303 PAPAPAPAPSPAPASAPVPAPAPTPAPAPAPPNKV 337
>TAF6_XENLA (Q91857) Transcription initiation factor TFIID subunit 6| (Transcription initiation factor TFIID 70 kDa subunit) (TAF(II)70) (TAFII-70) (TAFII-60) (TAFII60) Length = 618 Score = 29.3 bits (64), Expect = 9.5 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = -1 Query: 488 LLGSGRGLGDGEAREIEHGLLHGPLIDLQPESI 390 L G G+G G+G+ +E + +L G + L+P SI Sbjct: 174 LPGKGQGSGEGKGKEKKTAILKGAPLKLKPRSI 206
>ARLY_COLLI (Q01592) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) (Delta crystallin) Length = 466 Score = 29.3 bits (64), Expect = 9.5 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = +3 Query: 402 LEINERPMKKAMLDFSSLSISQPSSTAQEEPRVKKLLVQHVETVHHSGAVEDVL 563 LEI +R + ++ LDF+S+S++ + Q + V+ L V + +H S ED++ Sbjct: 209 LEI-DRELLRSELDFASISLNSMDAVRQRDSVVEFLSVAALLMIHLSKMAEDLI 261 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,107,116 Number of Sequences: 219361 Number of extensions: 1537203 Number of successful extensions: 6995 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 6402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6973 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
