ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK058945.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
2gb|AY104450.1| Zea mays PCO089543 mRNA sequence 82 2e-12
3dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
6gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
7emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769... 72 2e-09
8emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb... 72 2e-09
9emb|BX819685.1|CNS0AA1N Arabidopsis thaliana Full-length cDNA Co... 44 0.53
10gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, com... 42 2.1
11gb|AF463452.1| Ustilago maydis GTP binding protein Cdc42 (cdc42)... 42 2.1
12ref|XM_549990.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
13ref|XM_463562.1| Oryza sativa (japonica cultivar-group), predic... 40 8.3
14gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 8.3
15gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome ... 40 8.3
16gb|AC148825.4| Pan troglodytes BAC clone CH251-539J12 from chrom... 40 8.3
17gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.3
18gb|AC104843.3| Homo sapiens BAC clone RP11-1246H4 from 7, comple... 40 8.3
19gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, com... 40 8.3
20emb|AL391495.16| Human DNA sequence from clone RP11-324B6 on chr... 40 8.3
21gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 8.3
22emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chr... 40 8.3
23emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segmen... 40 8.3
24gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, co... 40 8.3
25gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, com... 40 8.3
26dbj|BS000633.3| Pan troglodytes chromosome Y clone: PTB-483C22, ... 40 8.3
27dbj|BS000665.1| Pan troglodytes chromosome Y clone:PTB-114E01, c... 40 8.3
28gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 8.3
29gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequ... 40 8.3
30ref|XM_397409.2| PREDICTED: Apis mellifera hypothetical LOC41397... 40 8.3
31dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
32dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
33gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chrom... 40 8.3
34gb|AC074096.8| Homo sapiens BAC clone RP11-328L16 from 2, comple... 40 8.3
35gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa004... 40 8.3
36gb|AC108463.3| Homo sapiens BAC clone RP11-181E10 from 2, comple... 40 8.3
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.3
38dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
39dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
40dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
41emb|BX005405.11| Zebrafish DNA sequence from clone DKEY-19I22 in... 40 8.3
42dbj|AK121464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.3
43gb|AC006989.3|AC006989 Homo sapiens BAC clone RP11-225B4 from Y,... 40 8.3
44gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complet... 40 8.3
45emb|BX470148.15| Zebrafish DNA sequence from clone CH211-198A16 ... 40 8.3
46gb|AY109133.1| Zea mays PCO130972 mRNA sequence 40 8.3
47gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 40 8.3
48gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome... 40 8.3
49dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3 
>dbj|AK058945.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-H10, full
           insert sequence
          Length = 1313

 Score =  139 bits (70), Expect = 1e-29
 Identities = 97/106 (91%)
 Strand = Plus / Plus

                                                                       
Query: 349 tcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctttctggctggaga 408
           |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||| ||||
Sbjct: 147 tcgtcgtccgtgtcaagcgcaagccctcccagacccgccccgacgctttctggctagaga 206

                                                         
Query: 409 tcaatgagaggcccatgaagaaggccatgctcgatttctcgagcct 454
           |||||||||||||  |||||||||| |||||||||||||| |||||
Sbjct: 207 tcaatgagaggccggtgaagaaggctatgctcgatttctccagcct 252



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 102/127 (80%)
 Strand = Plus / Plus

                                                                       
Query: 485 agaggaaccacgggtgaagaagcttcttgtccagcatgtcgagacagtccatcattctgg 544
           ||||||||||||||| ||||| ||||| || |||||  | |||||||| || ||||||| 
Sbjct: 292 agaggaaccacgggttaagaaacttctggtacagcacattgagacagtacaccattctga 351

                                                                       
Query: 545 agctgttgaagacgttcttcactcccttttgcattctggcctgagcaccaaagagataaa 604
            || ||| | || ||| | ||||| ||| ||||||||| | ||    |||||||||||||
Sbjct: 352 ggcagttcaggatgttttgcactctcttctgcattctgacttggatgccaaagagataaa 411

                  
Query: 605 gagcaag 611
           |||||||
Sbjct: 412 gagcaag 418
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>gb|AY104450.1| Zea mays PCO089543 mRNA sequence
          Length = 564

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 74/85 (87%)
 Strand = Plus / Plus

                                                                       
Query: 337 gggataagcccgtcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctt 396
           |||| |||||| |||||||||||||||||||||| || |||||   |||||| || ||||
Sbjct: 67  gggagaagcccatcgtcgtccgggtcaagcgcaaaccttcgcaaaaccgcccggacgctt 126

                                    
Query: 397 tctggctggagatcaatgagaggcc 421
           ||||||| ||||| |||||||||||
Sbjct: 127 tctggctagagattaatgagaggcc 151



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                       
Query: 485 agaggaaccacgggtgaagaagcttcttgtccagcatgtcgagacagtccatcattctgg 544
           ||||||||||||||| |||||  |||||||||||||  |||||||||| || || |||| 
Sbjct: 230 agaggaaccacgggttaagaaaattcttgtccagcacatcgagacagtacaccactctga 289

                       
Query: 545 agctgttgaaga 556
           |||||| |||||
Sbjct: 290 agctgtcgaaga 301
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 349    tcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctttctg 400
              |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 561683 tcgtcgtccgtgtcaagcgcaagccctcccagacccgccccgacgctttctg 561632



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 400    ggctggagatcaatgagaggcccatgaagaaggccatgctcgatttctcgagcct 454
              |||| |||||||||||||||||  |||||||||| |||||||||||||| |||||
Sbjct: 561535 ggctagagatcaatgagaggccggtgaagaaggctatgctcgatttctccagcct 561481



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                         
Query: 485    agaggaaccacgggtgaagaagcttcttgtccagcatgtcgagacagtccatcattctg 543
              ||||||||||||||| ||||| ||||| || |||||  | |||||||| || |||||||
Sbjct: 560878 agaggaaccacgggttaagaaacttctggtacagcacattgagacagtacaccattctg 560820



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    ccaaagagataaagagcaag 611
              ||||||||||||||||||||
Sbjct: 560468 ccaaagagataaagagcaag 560449
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 349    tcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctttctg 400
              |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 483600 tcgtcgtccgtgtcaagcgcaagccctcccagacccgccccgacgctttctg 483549



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 400    ggctggagatcaatgagaggcccatgaagaaggccatgctcgatttctcgagcct 454
              |||| |||||||||||||||||  |||||||||| |||||||||||||| |||||
Sbjct: 483450 ggctagagatcaatgagaggccggtgaagaaggctatgctcgatttctccagcct 483396



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    ccaaagagataaagagcaag 611
              ||||||||||||||||||||
Sbjct: 482430 ccaaagagataaagagcaag 482411
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 349    tcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctttctg 400
              |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 483600 tcgtcgtccgtgtcaagcgcaagccctcccagacccgccccgacgctttctg 483549



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 400    ggctggagatcaatgagaggcccatgaagaaggccatgctcgatttctcgagcct 454
              |||| |||||||||||||||||  |||||||||| |||||||||||||| |||||
Sbjct: 483450 ggctagagatcaatgagaggccggtgaagaaggctatgctcgatttctccagcct 483396



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    ccaaagagataaagagcaag 611
              ||||||||||||||||||||
Sbjct: 482430 ccaaagagataaagagcaag 482411
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                  
Query: 349    tcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctttctg 400
              |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 561683 tcgtcgtccgtgtcaagcgcaagccctcccagacccgccccgacgctttctg 561632



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 400    ggctggagatcaatgagaggcccatgaagaaggccatgctcgatttctcgagcct 454
              |||| |||||||||||||||||  |||||||||| |||||||||||||| |||||
Sbjct: 561535 ggctagagatcaatgagaggccggtgaagaaggctatgctcgatttctccagcct 561481



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                         
Query: 485    agaggaaccacgggtgaagaagcttcttgtccagcatgtcgagacagtccatcattctg 543
              ||||||||||||||| ||||| ||||| || |||||  | |||||||| || |||||||
Sbjct: 560878 agaggaaccacgggttaagaaacttctggtacagcacattgagacagtacaccattctg 560820



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 592    ccaaagagataaagagcaag 611
              ||||||||||||||||||||
Sbjct: 560468 ccaaagagataaagagcaag 560449
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>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 115859

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 349   tcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctttctg 400
             |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 87160 tcgtcgtccgtgtcaagcgcaagccctcccagacccgccccgacgctttctg 87211



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 400   ggctggagatcaatgagaggcccatgaagaaggccatgctcgatttctcgagcct 454
             |||| |||||||||||||||||  |||||||||| |||||||||||||| |||||
Sbjct: 87308 ggctagagatcaatgagaggccggtgaagaaggctatgctcgatttctccagcct 87362



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                        
Query: 485   agaggaaccacgggtgaagaagcttcttgtccagcatgtcgagacagtccatcattctg 543
             ||||||||||||||| ||||| ||||| || |||||  | |||||||| || |||||||
Sbjct: 87965 agaggaaccacgggttaagaaacttctggtacagcacattgagacagtacaccattctg 88023



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   ccaaagagataaagagcaag 611
             ||||||||||||||||||||
Sbjct: 88375 ccaaagagataaagagcaag 88394
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>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130544

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 349   tcgtcgtccgggtcaagcgcaagccctcgcaggcccgccccgatgctttctg 400
             |||||||||| ||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 86712 tcgtcgtccgtgtcaagcgcaagccctcccagacccgccccgacgctttctg 86763



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 400   ggctggagatcaatgagaggcccatgaagaaggccatgctcgatttctcgagcct 454
             |||| |||||||||||||||||  |||||||||| |||||||||||||| |||||
Sbjct: 86862 ggctagagatcaatgagaggccggtgaagaaggctatgctcgatttctccagcct 86916



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 592   ccaaagagataaagagcaag 611
             ||||||||||||||||||||
Sbjct: 87882 ccaaagagataaagagcaag 87901
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>emb|BX819685.1|CNS0AA1N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS17ZB08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1332

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 389 cgatgctttctggctggagatcaatgagag 418
           ||||||||||||| ||||||| ||||||||
Sbjct: 172 cgatgctttctggttggagataaatgagag 201
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>gb|AC133565.5| Homo sapiens chromosome 16 clone RP11-895K13, complete sequence
          Length = 168538

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 52    tcctcccttcctccactgttc 72
             |||||||||||||||||||||
Sbjct: 75764 tcctcccttcctccactgttc 75744
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>gb|AF463452.1| Ustilago maydis GTP binding protein Cdc42 (cdc42) gene, complete cds
          Length = 1203

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 552  gaagacgttcttcactcccttttgc 576
            |||||||||||||| ||||||||||
Sbjct: 1071 gaagacgttcttcaatcccttttgc 1047
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>ref|XM_549990.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2215

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agcggaggccgccggagagg 312
            ||||||||||||||||||||
Sbjct: 1133 agcggaggccgccggagagg 1114
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>ref|XM_463562.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 390

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 48  ctcctcctcccttcctccac 67
           ||||||||||||||||||||
Sbjct: 180 ctcctcctcccttcctccac 161
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 427    agaaggccatgctcgatttc 446
              ||||||||||||||||||||
Sbjct: 488128 agaaggccatgctcgatttc 488147
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>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence
          Length = 252334

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 51     ctcctcccttcctccactgttccc 74
              |||||||||||||||| |||||||
Sbjct: 176008 ctcctcccttcctccagtgttccc 175985
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>gb|AC148825.4| Pan troglodytes BAC clone CH251-539J12 from chromosome 7, complete
              sequence
          Length = 181673

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 254    ctcctagttattccccggtt 273
              ||||||||||||||||||||
Sbjct: 147394 ctcctagttattccccggtt 147375
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>gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0663C08,
             complete sequence
          Length = 142196

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    ctgttcccgccgtccgtccg 86
             ||||||||||||||||||||
Sbjct: 65251 ctgttcccgccgtccgtccg 65270
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>gb|AC104843.3| Homo sapiens BAC clone RP11-1246H4 from 7, complete sequence
          Length = 126626

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   ctcctagttattccccggtt 273
             ||||||||||||||||||||
Sbjct: 23738 ctcctagttattccccggtt 23719
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>gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, complete sequence
          Length = 142863

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ctcctcctcccttcctccac 67
             ||||||||||||||||||||
Sbjct: 64888 ctcctcctcccttcctccac 64869
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>emb|AL391495.16| Human DNA sequence from clone RP11-324B6 on chromosome Xq13.2-21.1
             Contains a tetratricopeptide repeat domain 3 (TTC3)
             pseudogene and the gene for hepatocellular
             carcinoma-associated protein (HCA3), complete sequence
          Length = 142952

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ctcctcctcccttcctccac 67
             ||||||||||||||||||||
Sbjct: 73141 ctcctcctcccttcctccac 73122
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 217     ggcgaggcgccgacgacagggacc 240
               ||||||||||||||||||| ||||
Sbjct: 3021462 ggcgaggcgccgacgacagcgacc 3021485
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>emb|AL162393.15| Human DNA sequence from clone RP11-534I8 on chromosome 9 Contains a
              programmed cell death 2 (PDCD2) pseudogene, the 5' end of
              the gene for a novel C2H2 type zinc finger protein and two
              CpG islands, complete sequence
          Length = 184302

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 411    aatgagaggcccatgaagaa 430
              ||||||||||||||||||||
Sbjct: 135787 aatgagaggcccatgaagaa 135768
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>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7
          Length = 348764

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    gcctccacctccgcggccga 331
              ||||||||||||||||||||
Sbjct: 264368 gcctccacctccgcggccga 264349
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>gb|AC091044.9| Homo sapiens chromosome 18, clone RP11-694H12, complete sequence
          Length = 172179

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    tcctcccttcctccactgtt 71
             ||||||||||||||||||||
Sbjct: 12870 tcctcccttcctccactgtt 12851
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>gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, complete sequence
          Length = 199051

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     tcctcccttcctccactgtt 71
              ||||||||||||||||||||
Sbjct: 150563 tcctcccttcctccactgtt 150544
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>dbj|BS000633.3| Pan troglodytes chromosome Y clone: PTB-483C22, complete sequence
          Length = 129300

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    ctcctcctcccttcctccac 67
             ||||||||||||||||||||
Sbjct: 13716 ctcctcctcccttcctccac 13735
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>dbj|BS000665.1| Pan troglodytes chromosome Y clone:PTB-114E01, complete sequences
          Length = 178566

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ctcctcctcccttcctccac 67
              ||||||||||||||||||||
Sbjct: 164216 ctcctcctcccttcctccac 164235
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       ctcctcctcccttcctccac 67
                ||||||||||||||||||||
Sbjct: 20306451 ctcctcctcccttcctccac 20306432
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>gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequence
          Length = 46463

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 502  agaagcttcttgtccagcat 521
            ||||||||||||||||||||
Sbjct: 6720 agaagcttcttgtccagcat 6701
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>ref|XM_397409.2| PREDICTED: Apis mellifera hypothetical LOC413973 (LOC413973), mRNA
          Length = 1419

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 cgaaaccctctctggccagc 180
           ||||||||||||||||||||
Sbjct: 760 cgaaaccctctctggccagc 741
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 67       ctgttcccgccgtccgtccg 86
                ||||||||||||||||||||
Sbjct: 29286594 ctgttcccgccgtccgtccg 29286613
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 48       ctcctcctcccttcctccac 67
                ||||||||||||||||||||
Sbjct: 38509886 ctcctcctcccttcctccac 38509867



 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     agcggaggccgccggagagg 312
               ||||||||||||||||||||
Sbjct: 1443416 agcggaggccgccggagagg 1443397
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>gb|AC147710.3| Pan troglodytes BAC clone CH251-473C15 from chromosome y, complete
            sequence
          Length = 200403

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 48   ctcctcctcccttcctccac 67
            ||||||||||||||||||||
Sbjct: 1849 ctcctcctcccttcctccac 1868
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>gb|AC074096.8| Homo sapiens BAC clone RP11-328L16 from 2, complete sequence
          Length = 192649

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     tgctcactcctcctcccttc 61
              ||||||||||||||||||||
Sbjct: 166690 tgctcactcctcctcccttc 166709
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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 48     ctcctcctcccttcctccac 67
              ||||||||||||||||||||
Sbjct: 102979 ctcctcctcccttcctccac 102960
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>gb|AC108463.3| Homo sapiens BAC clone RP11-181E10 from 2, complete sequence
          Length = 63525

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    tctgctcactcctcctccct 59
             ||||||||||||||||||||
Sbjct: 28790 tctgctcactcctcctccct 28771
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 310     aggcctccacctccgcggcc 329
               ||||||||||||||||||||
Sbjct: 3379373 aggcctccacctccgcggcc 3379354
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>dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434C04
          Length = 150064

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ctcctcctcccttcctccac 67
             ||||||||||||||||||||
Sbjct: 30567 ctcctcctcccttcctccac 30548
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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408G07
          Length = 126631

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ctcctcctcccttcctccac 67
             ||||||||||||||||||||
Sbjct: 95301 ctcctcctcccttcctccac 95282
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>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0409B08
          Length = 134673

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agcggaggccgccggagagg 312
            ||||||||||||||||||||
Sbjct: 9064 agcggaggccgccggagagg 9045
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>emb|BX005405.11| Zebrafish DNA sequence from clone DKEY-19I22 in linkage group 20,
             complete sequence
          Length = 62329

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   ttgcattctggcctgagcac 592
             ||||||||||||||||||||
Sbjct: 37782 ttgcattctggcctgagcac 37763
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>dbj|AK121464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145F10, full
            insert sequence
          Length = 2215

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 293  agcggaggccgccggagagg 312
            ||||||||||||||||||||
Sbjct: 1133 agcggaggccgccggagagg 1114
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>gb|AC006989.3|AC006989 Homo sapiens BAC clone RP11-225B4 from Y, complete sequence
          Length = 157666

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ctcctcctcccttcctccac 67
              ||||||||||||||||||||
Sbjct: 146207 ctcctcctcccttcctccac 146226
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>gb|AC148872.2| Chlamydomonas reinhardtii clone cr-25P21, complete sequence
          Length = 45702

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 44    ctcactcctcctcccttcctccac 67
             |||||||||||||||| |||||||
Sbjct: 25954 ctcactcctcctccctccctccac 25931
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>emb|BX470148.15| Zebrafish DNA sequence from clone CH211-198A16 in linkage group 20,
             complete sequence
          Length = 64300

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 573   ttgcattctggcctgagcac 592
             ||||||||||||||||||||
Sbjct: 26519 ttgcattctggcctgagcac 26538
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>gb|AY109133.1| Zea mays PCO130972 mRNA sequence
          Length = 1326

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  cggctgcccgctccggcccc 31
           ||||||||||||||||||||
Sbjct: 124 cggctgcccgctccggcccc 143
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>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 51     ctcctcccttcctccactgttccc 74
              |||||||||||||||| |||||||
Sbjct: 141066 ctcctcccttcctccagtgttccc 141089
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>gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome 1, complete
            sequence
          Length = 195784

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 276  caggccatggcgtctgcagc 295
            ||||||||||||||||||||
Sbjct: 8751 caggccatggcgtctgcagc 8770
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>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0044F08
          Length = 141528

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   agcggaggccgccggagagg 312
             ||||||||||||||||||||
Sbjct: 93037 agcggaggccgccggagagg 93018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,824,664
Number of Sequences: 3902068
Number of extensions: 4824664
Number of successful extensions: 102653
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102037
Number of HSP's gapped (non-prelim): 616
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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