| Clone Name | basd25b21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106217.1| Zea mays PCO093522 mRNA sequence Length = 679 Score = 547 bits (276), Expect = e-152 Identities = 443/499 (88%), Gaps = 6/499 (1%) Strand = Plus / Plus Query: 90 gatgaccatcatcatcgaccagactcagttcgatgcggcggcggagaggaaggtcgcc-- 147 |||||| |||| ||| || ||| | ||| ||||||||| |||||||||||| ||| || Sbjct: 115 gatgacgatcaccattgaacagccccagctcgatgcggtggcggagaggaaagtccccgg 174 Query: 148 ----ggggacccgggggagctcgtgctcgacggcggcttcaccgtgccggattccaacgc 203 || ||||| | |||||| |||||||||| ||||||| ||||||||| ||||||| Sbjct: 175 cggaggtgaccccgcggagctggtgctcgacgccggcttcgtcgtgccggacgccaacgc 234 Query: 204 cttcggccacaccttcagggactacgacgcggagtcggagcggaagaagacggtggagga 263 ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| ||||| Sbjct: 235 cttcggcaataccttcagggactacgacgcggagtcggagcggaagcagacggtagagga 294 Query: 264 gttctaccgcgtgaaccacatcagccagacgtacgagttcgtgcggcggatgcgggacgc 323 ||||||||| ||||||||| | || |||||| ||||||||||| ||||||||||| | Sbjct: 295 gttctaccgggtgaaccacgtgaggcagacgcacgagttcgtggcgcggatgcgggcgga 354 Query: 324 gtacgcgcggctggacaggacggagatgagcatctgggagtgcatcgagctgctcaacga 383 ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 355 gtacgggcggctggacaagacggagatgggcatctgggagtgcatcgagctgctgaacga 414 Query: 384 gttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacctcctccagac 443 ||||||||||||||||||||| ||||| |||||||| |||||||||||||| || ||||| Sbjct: 415 gttcatcgacgacagcgacccggacctggacatgccccagatcgagcacctgctgcagac 474 Query: 444 cgccgaggccatccgcaaggactaccccgacgaggactggctccacctcacgggcctcat 503 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 475 cgccgaggccatccgcaaggactaccccgacgaggactggctccacctcaccggactcat 534 Query: 504 ccacgatctgggcaaggtgctgctgcatcccagcttcggggagcttcctcagtgggcagt 563 |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||| || Sbjct: 535 ccacgacctgggcaaggtgctgctgcacccaagcttcggggagctccctcagtgggctgt 594 Query: 564 cgtaggtgacaccttcccc 582 ||| ||||||||||||||| Sbjct: 595 cgtcggtgacaccttcccc 613
>dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G02, full insert sequence Length = 1288 Score = 539 bits (272), Expect = e-150 Identities = 386/424 (91%) Strand = Plus / Plus Query: 159 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 218 ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 266 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 325 Query: 219 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 278 |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || || Sbjct: 326 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 385 Query: 279 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 338 |||||||| |||||| || || |||||| ||||||||||||| | ||||| || |||| Sbjct: 386 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 445 Query: 339 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 398 || |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 505 Query: 399 cgaccccgacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccg 458 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 cgacccggacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccg 565 Query: 459 caaggactaccccgacgaggactggctccacctcacgggcctcatccacgatctgggcaa 518 |||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 566 caaggatttccccgacgaggactggctccacctcactggcctcatccacgatctgggcaa 625 Query: 519 ggtgctgctgcatcccagcttcggggagcttcctcagtgggcagtcgtaggtgacacctt 578 ||||||||||||||||||||| |||||||| || |||||| ||||||| ||||||||||| Sbjct: 626 ggtgctgctgcatcccagctttggggagctcccacagtggtcagtcgtcggtgacacctt 685 Query: 579 cccc 582 |||| Sbjct: 686 cccc 689
>dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169F14, full insert sequence Length = 1289 Score = 539 bits (272), Expect = e-150 Identities = 386/424 (91%) Strand = Plus / Plus Query: 159 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 218 ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 267 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 326 Query: 219 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 278 |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || || Sbjct: 327 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 386 Query: 279 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 338 |||||||| |||||| || || |||||| ||||||||||||| | ||||| || |||| Sbjct: 387 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 446 Query: 339 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 398 || |||||||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 506 Query: 399 cgaccccgacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccg 458 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 cgacccggacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccg 566 Query: 459 caaggactaccccgacgaggactggctccacctcacgggcctcatccacgatctgggcaa 518 |||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 567 caaggatttccccgacgaggactggctccacctcactggcctcatccacgatctgggcaa 626 Query: 519 ggtgctgctgcatcccagcttcggggagcttcctcagtgggcagtcgtaggtgacacctt 578 ||||||||||||||||||||| |||||||| || |||||| ||||||| ||||||||||| Sbjct: 627 ggtgctgctgcatcccagctttggggagctcccacagtggtcagtcgtcggtgacacctt 686 Query: 579 cccc 582 |||| Sbjct: 687 cccc 690
>gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence Length = 783 Score = 301 bits (152), Expect = 1e-78 Identities = 191/204 (93%) Strand = Plus / Minus Query: 379 aacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacctcctc 438 |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || Sbjct: 775 aacgagttcatcgacgacagcgacccggacctggacatgccccagatcgagcacctgctg 716 Query: 439 cagaccgccgaggccatccgcaaggactaccccgacgaggactggctccacctcacgggc 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 715 cagaccgccgaggccatccgcaaggactaccccgacgaggactggctccacctcaccgga 656 Query: 499 ctcatccacgatctgggcaaggtgctgctgcatcccagcttcggggagcttcctcagtgg 558 ||||||||||| |||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct: 655 ctcatccacgacctgggcaaggtgctgctgcacccaagcttcggggagctccctcagtgg 596 Query: 559 gcagtcgtaggtgacaccttcccc 582 || ||||| ||||||||||||||| Sbjct: 595 gctgtcgtcggtgacaccttcccc 572
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 295 bits (149), Expect = 8e-77 Identities = 188/201 (93%) Strand = Plus / Plus Query: 308 ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 367 ||||||||||||| | ||||| || |||||| |||||||||| | ||||||||||||| Sbjct: 21132448 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 21132507 Query: 368 tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 427 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 21132508 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 21132567 Query: 428 agcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggactggctcc 487 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 21132568 agcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctcc 21132627 Query: 488 acctcacgggcctcatccacg 508 ||||||| ||||||||||||| Sbjct: 21132628 acctcactggcctcatccacg 21132648 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 159 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 218 ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 21131065 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 21131124 Query: 219 cagg 222 |||| Sbjct: 21131125 cagg 21131128 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 508 gatctgggcaaggtgctgctgcatcccagcttcggggagcttcctcagtgggcagtcgt 566 |||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| Sbjct: 21133236 gatctgggcaaggtgctgctgcatcccagctttggggagctcccacagtggtcagtcgt 21133294 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 235 gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 293 ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| |||||| Sbjct: 21132241 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 21132299
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456F09 Length = 141336 Score = 295 bits (149), Expect = 8e-77 Identities = 188/201 (93%) Strand = Plus / Plus Query: 308 ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 367 ||||||||||||| | ||||| || |||||| |||||||||| | ||||||||||||| Sbjct: 31109 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 31168 Query: 368 tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 427 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 31169 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 31228 Query: 428 agcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggactggctcc 487 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 31229 agcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctcc 31288 Query: 488 acctcacgggcctcatccacg 508 ||||||| ||||||||||||| Sbjct: 31289 acctcactggcctcatccacg 31309 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 159 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 218 ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 29726 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 29785 Query: 219 cagg 222 |||| Sbjct: 29786 cagg 29789 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 508 gatctgggcaaggtgctgctgcatcccagcttcggggagcttcctcagtgggcagtcgt 566 |||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| Sbjct: 31897 gatctgggcaaggtgctgctgcatcccagctttggggagctcccacagtggtcagtcgt 31955 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 235 gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 293 ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| |||||| Sbjct: 30902 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 30960
>dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528E12 Length = 139750 Score = 295 bits (149), Expect = 8e-77 Identities = 188/201 (93%) Strand = Plus / Plus Query: 308 ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 367 ||||||||||||| | ||||| || |||||| |||||||||| | ||||||||||||| Sbjct: 129449 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 129508 Query: 368 tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 427 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 129509 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 129568 Query: 428 agcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggactggctcc 487 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 129569 agcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctcc 129628 Query: 488 acctcacgggcctcatccacg 508 ||||||| ||||||||||||| Sbjct: 129629 acctcactggcctcatccacg 129649 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Plus Query: 159 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 218 ||||||||||||||||||||||||| ||||||||| ||||||||||||||| || |||| Sbjct: 128066 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 128125 Query: 219 cagg 222 |||| Sbjct: 128126 cagg 128129 Score = 85.7 bits (43), Expect = 1e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 508 gatctgggcaaggtgctgctgcatcccagcttcggggagcttcctcagtgggcagtcgt 566 |||||||||||||||||||||||||||||||| |||||||| || |||||| ||||||| Sbjct: 130237 gatctgggcaaggtgctgctgcatcccagctttggggagctcccacagtggtcagtcgt 130295 Score = 69.9 bits (35), Expect = 9e-09 Identities = 53/59 (89%) Strand = Plus / Plus Query: 235 gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 293 ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| |||||| Sbjct: 129242 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 129300
>dbj|AB225760.1| Aspergillus oryzae cDNA, contig sequence: AoEST2615 Length = 851 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgc 459 |||||||||||||| |||||| ||||||||||||||||| Sbjct: 463 cagatcgagcaccttctccagtccgccgaggccatccgc 501
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 Length = 2505489 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgc 459 |||||||||||||| |||||| ||||||||||||||||| Sbjct: 1571844 cagatcgagcaccttctccagtccgccgaggccatccgc 1571806
>gb|AY232034.1| Drosophila yakuba clone yak-ad_CG6910 mRNA sequence Length = 474 Score = 54.0 bits (27), Expect = 5e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 481 tggctccacctcacgggcctcatccacgatctgggcaag 519 ||||| |||||||||| ||||||||||||||||||||| Sbjct: 313 tggctgcacctcacggcgctcatccacgatctgggcaag 351
>gb|AF049069.1|AF049069 Pinus radiata PRE87 mRNA, complete cds Length = 1230 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 496 ggcctcatccacgatctgggcaaggtgctgctgcatcc 533 ||||||||||| |||||||||||||| || |||||||| Sbjct: 306 ggcctcatccatgatctgggcaaggtactactgcatcc 343
>ref|XM_750263.1| Aspergillus fumigatus Af293 myo-inositol oxygenase (Afu2g10230) partial mRNA Length = 948 Score = 48.1 bits (24), Expect = 0.032 Identities = 36/40 (90%) Strand = Plus / Plus Query: 419 cgcagatcgagcacctcctccagaccgccgaggccatccg 458 |||||||||||||||| || || |||||||||||||||| Sbjct: 371 cgcagatcgagcacctgctacaatccgccgaggccatccg 410
>gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosynthetic gene cluster, complete sequence Length = 48200 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 510 tctgggcaaggtgctgctgcatc 532 ||||||||||||||||||||||| Sbjct: 880 tctgggcaaggtgctgctgcatc 902
>ref|XM_658497.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5985.2), mRNA Length = 648 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 493 acgggcctcatccacgatctgggcaag 519 |||||||||||||||||||| |||||| Sbjct: 142 acgggcctcatccacgatctcggcaag 168
>emb|AJ290426.1|CGL290426 Colletotrichum gloeosporioides f. sp. aeschynomene mRNA for aldehyde reductase 6 (alr6 gene) Length = 939 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccat 455 |||||| ||||||| || ||||||||||||||||| Sbjct: 100 cagatccagcacctgctgcagaccgccgaggccat 134
>emb|AL096767.14|HSJ579N16 Human DNA sequence from clone RP4-579N16 on chromosome 22 Contains the 3' part of the gene for KIAA0685, the SBF1 gene for SET binding factor 1, a novel gene, ESTs, an STS, GSSs and three putative CpG islands, complete sequence Length = 66618 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 553 cagtgggcagtcgtaggtgacaccttcccc 582 |||||||||||| | ||||||||||||||| Sbjct: 64330 cagtgggcagtcatcggtgacaccttcccc 64359
>gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gene, complete cds Length = 696 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Plus Query: 166 gtgctcgacggcggcttcaccg 187 |||||||||||||||||||||| Sbjct: 508 gtgctcgacggcggcttcaccg 529
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 159 ggagctcgtgctcgacggcggcttcaccg 187 |||||||||| ||||||||||||| |||| Sbjct: 1658588 ggagctcgtgatcgacggcggctttaccg 1658616
>ref|XM_585387.2| PREDICTED: Bos taurus similar to Inositol oxygenase (Myo-inositol oxygenase) (Aldehyde reductase-like 6) (Renal-specific oxidoreductase) (Kidney-specific protein 32) (LOC508591), mRNA Length = 1285 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 553 cagtgggcagtcgtaggtgacaccttccc 581 |||||||||||||| || ||||||||||| Sbjct: 670 cagtgggcagtcgtcggagacaccttccc 698
>gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence Length = 136822 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 516 caaggtgctgctgcatcccag 536 ||||||||||||||||||||| Sbjct: 21048 caaggtgctgctgcatcccag 21028
>emb|BX055800.1|CNS09F7W Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC34CC07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 641 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 catcatcatcgaccagactcagttc 120 ||||||||||||||||| ||||||| Sbjct: 414 catcatcatcgaccagaatcagttc 438
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 ctccgccgctctcgctgccgcgaga 58 |||||||||||| |||||||||||| Sbjct: 10056850 ctccgccgctcttgctgccgcgaga 10056826
>dbj|AK000576.1| Homo sapiens cDNA FLJ20569 fis, clone REC00864 Length = 1503 Score = 42.1 bits (21), Expect = 2.0 Identities = 30/33 (90%) Strand = Plus / Plus Query: 550 cctcagtgggcagtcgtaggtgacaccttcccc 582 ||||||||||| ||||| || |||||||||||| Sbjct: 838 cctcagtgggctgtcgtcggcgacaccttcccc 870
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 ctccgccgctctcgctgccgcgaga 58 |||||||||||| |||||||||||| Sbjct: 10056735 ctccgccgctcttgctgccgcgaga 10056711
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 ctccgccgctctcgctgccgcgaga 58 |||||||||||| |||||||||||| Sbjct: 105771 ctccgccgctcttgctgccgcgaga 105795
>emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb0071E08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132906 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 34 ctccgccgctctcgctgccgcgaga 58 |||||||||||| |||||||||||| Sbjct: 1224 ctccgccgctcttgctgccgcgaga 1248
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 249 gaagacggtggaggagttcta 269 ||||||||||||||||||||| Sbjct: 3065647 gaagacggtggaggagttcta 3065627
>ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) mRNA, complete cds Length = 1350 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 67 gcggaagaagacggtggagg 48
>ref|NM_101319.2| Arabidopsis thaliana MIOX1 (MYO-INISITOL OXYGENASE); oxidoreductase AT1G14520 (MIOX1) mRNA, complete cds Length = 1159 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 414 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 473 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 474 tggctccatctgaccggtcttatccacgatct 505
>gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC), and AhpF (ahpF) genes, complete cds; and oxidoreductase gene, partial cds Length = 4471 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 383 agttcatcgacgacagcgaccccgacct 410 |||||||||||| ||||||| ||||||| Sbjct: 1444 agttcatcgacgtcagcgacgccgacct 1471
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 ggacgcgtacgcgcggctgg 337 |||||||||||||||||||| Sbjct: 33662 ggacgcgtacgcgcggctgg 33681
>ref|XM_751823.1| Ustilago maydis 521 hypothetical protein (UM00769.1) partial mRNA Length = 993 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 tgcatcgagctgctcaacga 383 |||||||||||||||||||| Sbjct: 307 tgcatcgagctgctcaacga 326
>ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02801.1) partial mRNA Length = 2130 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggcggcggagaggaaggtcg 145 |||||||||||||||||||| Sbjct: 1629 ggcggcggagaggaaggtcg 1610
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence, complete sequence Length = 80379 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 79087 gcggaagaagacggtggagg 79068
>emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chromosome 10 Contains part of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G), complete sequence Length = 172177 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 gaggactggctccacctcac 494 |||||||||||||||||||| Sbjct: 120257 gaggactggctccacctcac 120238
>gb|BT000187.1| Arabidopsis thaliana unknown protein (At1g14520) mRNA, complete cds Length = 1056 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 355 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 414 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 415 tggctccatctgaccggtcttatccacgatct 446
>gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATPase (At3g10670) mRNA, complete cds Length = 1368 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 67 gcggaagaagacggtggagg 48
>gb|AY136388.1| Arabidopsis thaliana unknown protein (At1g14520) mRNA, complete cds Length = 1160 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 415 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 474 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 475 tggctccatctgaccggtcttatccacgatct 506
>gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complete sequence Length = 36012 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ggaagaagacggtggaggag 264 |||||||||||||||||||| Sbjct: 29296 ggaagaagacggtggaggag 29277
>gb|AE006023.1| Caulobacter crescentus CB15 section 349 of 359 of the complete genome Length = 8617 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 441 gaccgccgaggccatccgca 460 |||||||||||||||||||| Sbjct: 3411 gaccgccgaggccatccgca 3392
>gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of the complete genome Length = 10212 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tcgatgcggcggcggagagg 138 |||||||||||||||||||| Sbjct: 5804 tcgatgcggcggcggagagg 5785
>dbj|AK221931.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-41-F22 Length = 1160 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 405 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 464 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 465 tggctccatctgaccggtcttatccacgatct 496
>gb|AC004596.2| Homo sapiens chromosome 17, clone CTB-175E5, complete sequence Length = 92000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 ctgggcaaggtgctgctgca 530 |||||||||||||||||||| Sbjct: 53419 ctgggcaaggtgctgctgca 53400
>emb|BX818200.1|CNS0ADVO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL66ZA04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1073 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 374 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 433 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 434 tggctccatctgaccggtcttatccacgatct 465
>emb|BX813739.1|CNS0ADML Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB37ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1413 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 612 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 671 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 672 tggctccatctgaccggtcttatccacgatct 703
>emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB26ZH03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1277 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 54 gcggaagaagacggtggagg 35
>emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH80ZD10 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1303 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 52 gcggaagaagacggtggagg 33
>emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH44ZA08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1276 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 52 gcggaagaagacggtggagg 33
>emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZF02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1311 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 53 gcggaagaagacggtggagg 34
>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence Length = 118107 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 10036 gcggaagaagacggtggagg 10017
>gb|AE004618.1| Pseudomonas aeruginosa PAO1, section 179 of 529 of the complete genome Length = 11060 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 gccgaggccatccgcaaggactac 468 ||||||||||||||||||| |||| Sbjct: 9622 gccgaggccatccgcaagggctac 9645
>gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete sequence Length = 1350 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gcggaagaagacggtggagg 262 |||||||||||||||||||| Sbjct: 67 gcggaagaagacggtggagg 48
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 507 cgatctgggcaaggtgctgc 526 |||||||||||||||||||| Sbjct: 4723467 cgatctgggcaaggtgctgc 4723448
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acctcacgggcctcatccac 507 |||||||||||||||||||| Sbjct: 1492992 acctcacgggcctcatccac 1492973
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tcgacggcggcttcaccgtg 189 |||||||||||||||||||| Sbjct: 4447233 tcgacggcggcttcaccgtg 4447214
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ctcgacggcggcttcaccgt 188 |||||||||||||||||||| Sbjct: 1339723 ctcgacggcggcttcaccgt 1339704
>dbj|AK176690.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-23-I20 Length = 1133 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 474 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 533 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 534 tggctccatctgaccggtcttatccacgatct 565
>dbj|AK175833.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-43-O13 Length = 1160 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 405 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 464 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 465 tggctccatctgaccggtcttatccacgatct 496
>dbj|AK175818.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-41-H22 Length = 1160 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 405 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 464 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 465 tggctccatctgaccggtcttatccacgatct 496
>dbj|AK175115.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-51-M10 Length = 1133 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 474 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 533 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 534 tggctccatctgaccggtcttatccacgatct 565
>dbj|AK118307.1| Arabidopsis thaliana At1g14520 mRNA for unknown protein, complete cds, clone: RAFL19-59-D02 Length = 1150 Score = 40.1 bits (20), Expect = 7.9 Identities = 74/92 (80%) Strand = Plus / Plus Query: 421 cagatcgagcacctcctccagaccgccgaggccatccgcaaggactaccccgacgaggac 480 ||||||||||| || || ||||| || || |||||| | || || ||||| || || ||| Sbjct: 405 cagatcgagcatctgcttcagacagctgaagccatcagaaaagattaccctgatgaagac 464 Query: 481 tggctccacctcacgggcctcatccacgatct 512 |||||||| || || || || ||||||||||| Sbjct: 465 tggctccatctgaccggtcttatccacgatct 496
>ref|XM_308776.2| Anopheles gambiae str. PEST ENSANGP00000014983 (ENSANGG00000012494), partial mRNA Length = 2943 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 421 cagatcgagcacctcctccagaccgccg 448 |||||||| ||||||||||||| ||||| Sbjct: 2358 cagatcgaacacctcctccagatcgccg 2331
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 cgccgaggccatccgcaagg 463 |||||||||||||||||||| Sbjct: 4207942 cgccgaggccatccgcaagg 4207961
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acctcacgggcctcatccac 507 |||||||||||||||||||| Sbjct: 1167687 acctcacgggcctcatccac 1167668
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 371 agctgctcaacgagttcatc 390 |||||||||||||||||||| Sbjct: 1933990 agctgctcaacgagttcatc 1933971
>emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on chromosome 2, complete sequence Length = 181419 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 475 gaggactggctccacctcac 494 |||||||||||||||||||| Sbjct: 13412 gaggactggctccacctcac 13431 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,505,857 Number of Sequences: 3902068 Number of extensions: 3505857 Number of successful extensions: 82583 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81284 Number of HSP's gapped (non-prelim): 1299 length of query: 582 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 559 effective length of database: 17,143,297,704 effective search space: 9583103416536 effective search space used: 9583103416536 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)