ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd24m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_463767.1| Oryza sativa (japonica cultivar-group), mRNA 274 3e-70
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
3dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
4dbj|AK121311.1| Oryza sativa (japonica cultivar-group) cDNA clon... 274 3e-70
5dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic D... 274 3e-70
6ref|NM_001030528.1| Xenopus tropicalis plastin 3 (T isoform) (pl... 46 0.13
7gb|BC094886.1| Xenopus tropicalis plastin 3 (T isoform), mRNA (c... 46 0.13
8gb|DQ366738.1| Uncultured Prochlorococcus marinus clone HOT0M-6C... 42 2.0
9gb|AF025529.1| Homo sapiens leucocyte immunoglobulin-like recept... 42 2.0
10emb|AL139117.11| Human DNA sequence from clone RP1-52N12 on chro... 42 2.0
11gb|BC047007.1| Homo sapiens leukocyte immunoglobulin-like recept... 42 2.0
12emb|CR759950.3| Gorilla DNA sequence from clone CH255-431H18, co... 42 2.0
13gb|AC160648.3| Pan troglodytes BAC clone CH251-568C23 from chrom... 42 2.0
14gb|AC175823.2| Pan troglodytes BAC clone CH251-175P6 from chromo... 42 2.0
15gb|AC025154.31| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Can... 42 2.0
16gb|AC022188.13| Homo sapiens chromosome 15, clone RP11-8P11, com... 42 2.0
17gb|AC009892.5|AC009892 Homo sapiens chromosome 19 clone CTB-83J4... 42 2.0
18gb|AC159033.2| Pan troglodytes BAC clone CH251-339G2 from chromo... 42 2.0
19dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome 42 2.0
20emb|AL355172.8| Human DNA sequence from clone RP4-598H20 on chro... 42 2.0
21gb|J05079.1|SYCPSAE Synechocystis sp. (PCC 6803) photosystem I s... 42 2.0
22gb|AC010518.7| Homo sapiens chromosome 19 clone LLNLR-260H6, com... 42 2.0
23gb|BC048694.1| Mus musculus protein tyrosine phosphatase, recept... 40 8.0
24gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome... 40 8.0
25emb|AL359392.9| Human DNA sequence from clone RP11-332E3 on chro... 40 8.0
26gb|AC111678.6| Rattus norvegicus 18 BAC CH230-60A14 (Children's ... 40 8.0
27emb|CR628362.8| Zebrafish DNA sequence from clone DKEY-74A12 in ... 40 8.0
28emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chr... 40 8.0
29gb|AC114147.5| Rattus norvegicus BAC CH230-144F3 (Children's Ho... 40 8.0
30gb|AF356004.1| Cicer arietinum ADP-glucose pyrophosphorylase sma... 40 8.0
31gb|AF249915.1|AF249915 Perilla frutescens ADP-glucose pyrophosph... 40 8.0
32gb|AC091619.3| Papio anubis clone RP41-139B7, complete sequence 40 8.0
33gb|AC137494.1| Homo sapiens chromosome 16 clone LA16c-491E3, com... 40 8.0
34gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, com... 40 8.0
35dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:R... 40 8.0
36gb|AC152922.5| Mus musculus BAC clone RP24-386D3 from 10, comple... 40 8.0
37emb|CR387935.16| Zebrafish DNA sequence from clone CH211-212O1 i... 40 8.0
38gb|AC147447.3| Gallus gallus BAC clone CH261-9P3 from chromosome... 40 8.0
39gb|AC122346.4| Mus musculus BAC clone RP23-368L6 from 13, comple... 40 8.0
40gb|U41520.1|PIGCYP2 Sus scrofa 17-alpha-hydroxylase cytochrome P... 40 8.0
41emb|AL670959.8| Mouse DNA sequence from clone RP23-94L5 on chrom... 40 8.0
42emb|AL160233.3|CNS01RGX Human chromosome 14 DNA sequence BAC C-2... 40 8.0
43emb|AL606932.10| Mouse DNA sequence from clone RP23-247I20 on ch... 40 8.0
44dbj|D88187.1| Mus musculus mRNA for Ftp-1, complete cds 40 8.0 
>ref|XM_463767.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3067

 Score =  274 bits (138), Expect = 3e-70
 Identities = 376/454 (82%), Gaps = 1/454 (0%)
 Strand = Plus / Minus

                                                                        
Query: 40   aattgcgctcccggccctcgatgtgcaattctttgaataaaagccagtcccatttgtcag 99
            ||||||||||||| ||||| || ||||| || || || ||||||||||||||||| ||||
Sbjct: 2059 aattgcgctcccgaccctcaatttgcaactccttaaacaaaagccagtcccatttatcag 2000

                                                                        
Query: 100  ggnaactcaagcttccatccatcttcgaccgcccagacgtaggcatgggtgtgccggttg 159
             | ||||||| |||| ||||||| || || ||| | |  ||||||||||||  |||||| 
Sbjct: 1999 ag-aactcaatcttcaatccatcatcaactgccaaaatataggcatgggtgaaccggtta 1941

                                                                        
Query: 160  acgacatagaacctctgctctgaaggcttaagagagactctagtgacaccgtgtagcttc 219
            || ||||| ||||||||||| |||||||| ||||| | |||| ||||||| |||| ||||
Sbjct: 1940 acaacataaaacctctgctccgaaggcttcagagatattctattgacaccatgtatcttc 1881

                                                                        
Query: 220  acagccacgcaccacccgttggagtttgatagttccagcataacttcagctccctcttcc 279
            ||||| |  |||||| | || || |  ||| ||||||||||||||||||| || ||||||
Sbjct: 1880 acagctatacaccactcatttgattccgatggttccagcataacttcagcgccttcttcc 1821

                                                                        
Query: 280  ctccagcacctatcagcctgaataatcaagaggtttgctttgcagcggaaggtatctata 339
            ||||||||||||||||  |||||||| || ||||||||| ||||| | |  | |||||||
Sbjct: 1820 ctccagcacctatcaggttgaataattaaaaggtttgctctgcagtgaacagaatctata 1761

                                                                        
Query: 340  ttctgcctaacctctgacagggccggcctttcactcgtgcggtcaacgggacttttgaaa 399
            ||||| |||||||| | ||  |||  ||||||| || |||| |||| ||||||||| |||
Sbjct: 1760 ttctgtctaacctcagccaaagccaacctttcattcatgcgctcaatgggacttttcaaa 1701

                                                                        
Query: 400  aaagacctcttttgcttcccacttggtcccatgggcgtcgagacatcgctgtcatccatg 459
             |||||||||||||||||||| ||| ||| || || || || ||||| ||||||||||||
Sbjct: 1700 gaagacctcttttgcttcccatttgatcctataggagttgaaacatcactgtcatccatg 1641

                                              
Query: 460  ttctcaagcagatcaagagaaatttccattgctg 493
            || ||||||| ||||||||| ||||||| |||||
Sbjct: 1640 ttttcaagcaaatcaagagagatttccagtgctg 1607
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             complete sequence
          Length = 35954743

 Score =  274 bits (138), Expect = 3e-70
 Identities = 376/454 (82%), Gaps = 1/454 (0%)
 Strand = Plus / Plus

                                                                         
Query: 40    aattgcgctcccggccctcgatgtgcaattctttgaataaaagccagtcccatttgtcag 99
             ||||||||||||| ||||| || ||||| || || || ||||||||||||||||| ||||
Sbjct: 11759 aattgcgctcccgaccctcaatttgcaactccttaaacaaaagccagtcccatttatcag 11818

                                                                         
Query: 100   ggnaactcaagcttccatccatcttcgaccgcccagacgtaggcatgggtgtgccggttg 159
              | ||||||| |||| ||||||| || || ||| | |  ||||||||||||  |||||| 
Sbjct: 11819 ag-aactcaatcttcaatccatcatcaactgccaaaatataggcatgggtgaaccggtta 11877

                                                                         
Query: 160   acgacatagaacctctgctctgaaggcttaagagagactctagtgacaccgtgtagcttc 219
             || ||||| ||||||||||| |||||||| ||||| | |||| ||||||| |||| ||||
Sbjct: 11878 acaacataaaacctctgctccgaaggcttcagagatattctattgacaccatgtatcttc 11937

                                                                         
Query: 220   acagccacgcaccacccgttggagtttgatagttccagcataacttcagctccctcttcc 279
             ||||| |  |||||| | || || |  ||| ||||||||||||||||||| || ||||||
Sbjct: 11938 acagctatacaccactcatttgattccgatggttccagcataacttcagcgccttcttcc 11997

                                                                         
Query: 280   ctccagcacctatcagcctgaataatcaagaggtttgctttgcagcggaaggtatctata 339
             ||||||||||||||||  |||||||| || ||||||||| ||||| | |  | |||||||
Sbjct: 11998 ctccagcacctatcaggttgaataattaaaaggtttgctctgcagtgaacagaatctata 12057

                                                                         
Query: 340   ttctgcctaacctctgacagggccggcctttcactcgtgcggtcaacgggacttttgaaa 399
             ||||| |||||||| | ||  |||  ||||||| || |||| |||| ||||||||| |||
Sbjct: 12058 ttctgtctaacctcagccaaagccaacctttcattcatgcgctcaatgggacttttcaaa 12117

                                                                         
Query: 400   aaagacctcttttgcttcccacttggtcccatgggcgtcgagacatcgctgtcatccatg 459
              |||||||||||||||||||| ||| ||| || || || || ||||| ||||||||||||
Sbjct: 12118 gaagacctcttttgcttcccatttgatcctataggagttgaaacatcactgtcatccatg 12177

                                               
Query: 460   ttctcaagcagatcaagagaaatttccattgctg 493
             || ||||||| ||||||||| ||||||| |||||
Sbjct: 12178 ttttcaagcaaatcaagagagatttccagtgctg 12211
to top
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:B1370C05
          Length = 148271

 Score =  274 bits (138), Expect = 3e-70
 Identities = 376/454 (82%), Gaps = 1/454 (0%)
 Strand = Plus / Plus

                                                                        
Query: 40   aattgcgctcccggccctcgatgtgcaattctttgaataaaagccagtcccatttgtcag 99
            ||||||||||||| ||||| || ||||| || || || ||||||||||||||||| ||||
Sbjct: 6368 aattgcgctcccgaccctcaatttgcaactccttaaacaaaagccagtcccatttatcag 6427

                                                                        
Query: 100  ggnaactcaagcttccatccatcttcgaccgcccagacgtaggcatgggtgtgccggttg 159
             | ||||||| |||| ||||||| || || ||| | |  ||||||||||||  |||||| 
Sbjct: 6428 ag-aactcaatcttcaatccatcatcaactgccaaaatataggcatgggtgaaccggtta 6486

                                                                        
Query: 160  acgacatagaacctctgctctgaaggcttaagagagactctagtgacaccgtgtagcttc 219
            || ||||| ||||||||||| |||||||| ||||| | |||| ||||||| |||| ||||
Sbjct: 6487 acaacataaaacctctgctccgaaggcttcagagatattctattgacaccatgtatcttc 6546

                                                                        
Query: 220  acagccacgcaccacccgttggagtttgatagttccagcataacttcagctccctcttcc 279
            ||||| |  |||||| | || || |  ||| ||||||||||||||||||| || ||||||
Sbjct: 6547 acagctatacaccactcatttgattccgatggttccagcataacttcagcgccttcttcc 6606

                                                                        
Query: 280  ctccagcacctatcagcctgaataatcaagaggtttgctttgcagcggaaggtatctata 339
            ||||||||||||||||  |||||||| || ||||||||| ||||| | |  | |||||||
Sbjct: 6607 ctccagcacctatcaggttgaataattaaaaggtttgctctgcagtgaacagaatctata 6666

                                                                        
Query: 340  ttctgcctaacctctgacagggccggcctttcactcgtgcggtcaacgggacttttgaaa 399
            ||||| |||||||| | ||  |||  ||||||| || |||| |||| ||||||||| |||
Sbjct: 6667 ttctgtctaacctcagccaaagccaacctttcattcatgcgctcaatgggacttttcaaa 6726

                                                                        
Query: 400  aaagacctcttttgcttcccacttggtcccatgggcgtcgagacatcgctgtcatccatg 459
             |||||||||||||||||||| ||| ||| || || || || ||||| ||||||||||||
Sbjct: 6727 gaagacctcttttgcttcccatttgatcctataggagttgaaacatcactgtcatccatg 6786

                                              
Query: 460  ttctcaagcagatcaagagaaatttccattgctg 493
            || ||||||| ||||||||| ||||||| |||||
Sbjct: 6787 ttttcaagcaaatcaagagagatttccagtgctg 6820
to top
>dbj|AK121311.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112F22, full
            insert sequence
          Length = 3068

 Score =  274 bits (138), Expect = 3e-70
 Identities = 376/454 (82%), Gaps = 1/454 (0%)
 Strand = Plus / Minus

                                                                        
Query: 40   aattgcgctcccggccctcgatgtgcaattctttgaataaaagccagtcccatttgtcag 99
            ||||||||||||| ||||| || ||||| || || || ||||||||||||||||| ||||
Sbjct: 2059 aattgcgctcccgaccctcaatttgcaactccttaaacaaaagccagtcccatttatcag 2000

                                                                        
Query: 100  ggnaactcaagcttccatccatcttcgaccgcccagacgtaggcatgggtgtgccggttg 159
             | ||||||| |||| ||||||| || || ||| | |  ||||||||||||  |||||| 
Sbjct: 1999 ag-aactcaatcttcaatccatcatcaactgccaaaatataggcatgggtgaaccggtta 1941

                                                                        
Query: 160  acgacatagaacctctgctctgaaggcttaagagagactctagtgacaccgtgtagcttc 219
            || ||||| ||||||||||| |||||||| ||||| | |||| ||||||| |||| ||||
Sbjct: 1940 acaacataaaacctctgctccgaaggcttcagagatattctattgacaccatgtatcttc 1881

                                                                        
Query: 220  acagccacgcaccacccgttggagtttgatagttccagcataacttcagctccctcttcc 279
            ||||| |  |||||| | || || |  ||| ||||||||||||||||||| || ||||||
Sbjct: 1880 acagctatacaccactcatttgattccgatggttccagcataacttcagcgccttcttcc 1821

                                                                        
Query: 280  ctccagcacctatcagcctgaataatcaagaggtttgctttgcagcggaaggtatctata 339
            ||||||||||||||||  |||||||| || ||||||||| ||||| | |  | |||||||
Sbjct: 1820 ctccagcacctatcaggttgaataattaaaaggtttgctctgcagtgaacagaatctata 1761

                                                                        
Query: 340  ttctgcctaacctctgacagggccggcctttcactcgtgcggtcaacgggacttttgaaa 399
            ||||| |||||||| | ||  |||  ||||||| || |||| |||| ||||||||| |||
Sbjct: 1760 ttctgtctaacctcagccaaagccaacctttcattcatgcgctcaatgggacttttcaaa 1701

                                                                        
Query: 400  aaagacctcttttgcttcccacttggtcccatgggcgtcgagacatcgctgtcatccatg 459
             |||||||||||||||||||| ||| ||| || || || || ||||| ||||||||||||
Sbjct: 1700 gaagacctcttttgcttcccatttgatcctataggagttgaaacatcactgtcatccatg 1641

                                              
Query: 460  ttctcaagcagatcaagagaaatttccattgctg 493
            || ||||||| ||||||||| ||||||| |||||
Sbjct: 1640 ttttcaagcaaatcaagagagatttccagtgctg 1607
to top
>dbj|AP006851.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
             fosmid clone:OSJNOa183H18
          Length = 38313

 Score =  274 bits (138), Expect = 3e-70
 Identities = 376/454 (82%), Gaps = 1/454 (0%)
 Strand = Plus / Plus

                                                                         
Query: 40    aattgcgctcccggccctcgatgtgcaattctttgaataaaagccagtcccatttgtcag 99
             ||||||||||||| ||||| || ||||| || || || ||||||||||||||||| ||||
Sbjct: 11759 aattgcgctcccgaccctcaatttgcaactccttaaacaaaagccagtcccatttatcag 11818

                                                                         
Query: 100   ggnaactcaagcttccatccatcttcgaccgcccagacgtaggcatgggtgtgccggttg 159
              | ||||||| |||| ||||||| || || ||| | |  ||||||||||||  |||||| 
Sbjct: 11819 ag-aactcaatcttcaatccatcatcaactgccaaaatataggcatgggtgaaccggtta 11877

                                                                         
Query: 160   acgacatagaacctctgctctgaaggcttaagagagactctagtgacaccgtgtagcttc 219
             || ||||| ||||||||||| |||||||| ||||| | |||| ||||||| |||| ||||
Sbjct: 11878 acaacataaaacctctgctccgaaggcttcagagatattctattgacaccatgtatcttc 11937

                                                                         
Query: 220   acagccacgcaccacccgttggagtttgatagttccagcataacttcagctccctcttcc 279
             ||||| |  |||||| | || || |  ||| ||||||||||||||||||| || ||||||
Sbjct: 11938 acagctatacaccactcatttgattccgatggttccagcataacttcagcgccttcttcc 11997

                                                                         
Query: 280   ctccagcacctatcagcctgaataatcaagaggtttgctttgcagcggaaggtatctata 339
             ||||||||||||||||  |||||||| || ||||||||| ||||| | |  | |||||||
Sbjct: 11998 ctccagcacctatcaggttgaataattaaaaggtttgctctgcagtgaacagaatctata 12057

                                                                         
Query: 340   ttctgcctaacctctgacagggccggcctttcactcgtgcggtcaacgggacttttgaaa 399
             ||||| |||||||| | ||  |||  ||||||| || |||| |||| ||||||||| |||
Sbjct: 12058 ttctgtctaacctcagccaaagccaacctttcattcatgcgctcaatgggacttttcaaa 12117

                                                                         
Query: 400   aaagacctcttttgcttcccacttggtcccatgggcgtcgagacatcgctgtcatccatg 459
              |||||||||||||||||||| ||| ||| || || || || ||||| ||||||||||||
Sbjct: 12118 gaagacctcttttgcttcccatttgatcctataggagttgaaacatcactgtcatccatg 12177

                                               
Query: 460   ttctcaagcagatcaagagaaatttccattgctg 493
             || ||||||| ||||||||| ||||||| |||||
Sbjct: 12178 ttttcaagcaaatcaagagagatttccagtgctg 12211
to top
>ref|NM_001030528.1| Xenopus tropicalis plastin 3 (T isoform) (pls1), mRNA
          Length = 3967

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 gctccctcttccctccagcacct 290
           |||||||||||||||||||||||
Sbjct: 26  gctccctcttccctccagcacct 4
to top
>gb|BC094886.1| Xenopus tropicalis plastin 3 (T isoform), mRNA (cDNA clone
           MGC:106020 IMAGE:5307467), complete cds
          Length = 3967

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 268 gctccctcttccctccagcacct 290
           |||||||||||||||||||||||
Sbjct: 26  gctccctcttccctccagcacct 4
to top
>gb|DQ366738.1| Uncultured Prochlorococcus marinus clone HOT0M-6C1 genomic sequence
          Length = 21832

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 460  ttctcaagcagatcaagagaa 480
            |||||||||||||||||||||
Sbjct: 9373 ttctcaagcagatcaagagaa 9393
to top
>gb|AF025529.1| Homo sapiens leucocyte immunoglobulin-like receptor-6b (LIR-6) mRNA,
            complete cds
          Length = 2445

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  tccctcttccctccagcacct 290
            |||||||||||||||||||||
Sbjct: 1696 tccctcttccctccagcacct 1716
to top
>emb|AL139117.11| Human DNA sequence from clone RP1-52N12 on chromosome 19, complete
             sequence
          Length = 148497

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   tccctcttccctccagcacct 290
             |||||||||||||||||||||
Sbjct: 22358 tccctcttccctccagcacct 22378
to top
>gb|BC047007.1| Homo sapiens leukocyte immunoglobulin-like receptor, subfamily B
            (with TM and ITIM domains), member 1, mRNA (cDNA clone
            IMAGE:4431264), containing frame-shift errors
          Length = 2631

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 270  tccctcttccctccagcacct 290
            |||||||||||||||||||||
Sbjct: 2176 tccctcttccctccagcacct 2196
to top
>emb|CR759950.3| Gorilla DNA sequence from clone CH255-431H18, complete sequence
          Length = 177306

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   tccctcttccctccagcacct 290
             |||||||||||||||||||||
Sbjct: 74852 tccctcttccctccagcacct 74872
to top
>gb|AC160648.3| Pan troglodytes BAC clone CH251-568C23 from chromosome unknown,
             complete sequence
          Length = 205923

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   tccctcttccctccagcacct 290
             |||||||||||||||||||||
Sbjct: 39926 tccctcttccctccagcacct 39946
to top
>gb|AC175823.2| Pan troglodytes BAC clone CH251-175P6 from chromosome unknown, complete
             sequence
          Length = 176244

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   tccctcttccctccagcacct 290
             |||||||||||||||||||||
Sbjct: 72611 tccctcttccctccagcacct 72631
to top
>gb|AC025154.31| Homo sapiens 12 BAC RP11-469H8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164813

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 167    agaacctctgctctgaaggct 187
              |||||||||||||||||||||
Sbjct: 114843 agaacctctgctctgaaggct 114823
to top
>gb|AC022188.13| Homo sapiens chromosome 15, clone RP11-8P11, complete sequence
          Length = 140176

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 269   ctccctcttccctccagcacc 289
             |||||||||||||||||||||
Sbjct: 34223 ctccctcttccctccagcacc 34243
to top
>gb|AC009892.5|AC009892 Homo sapiens chromosome 19 clone CTB-83J4, complete sequence
          Length = 134008

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   tccctcttccctccagcacct 290
             |||||||||||||||||||||
Sbjct: 72908 tccctcttccctccagcacct 72928
to top
>gb|AC159033.2| Pan troglodytes BAC clone CH251-339G2 from chromosome unknown, complete
              sequence
          Length = 152653

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 270    tccctcttccctccagcacct 290
              |||||||||||||||||||||
Sbjct: 111132 tccctcttccctccagcacct 111152
to top
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome
          Length = 3573470

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 334     tctatattctgcctaacctct 354
               |||||||||||||||||||||
Sbjct: 1981419 tctatattctgcctaacctct 1981439
to top
>emb|AL355172.8| Human DNA sequence from clone RP4-598H20 on chromosome 19, complete
             sequence
          Length = 84808

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 270   tccctcttccctccagcacct 290
             |||||||||||||||||||||
Sbjct: 25010 tccctcttccctccagcacct 25030
to top
>gb|J05079.1|SYCPSAE Synechocystis sp. (PCC 6803) photosystem I subunit III (psaE) gene,
            complete cds
          Length = 2394

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 334  tctatattctgcctaacctct 354
            |||||||||||||||||||||
Sbjct: 1002 tctatattctgcctaacctct 1022
to top
>gb|AC010518.7| Homo sapiens chromosome 19 clone LLNLR-260H6, complete sequence
          Length = 34674

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 270   tccctcttccctccagcacct 290
             |||||||||||||||||||||
Sbjct: 24599 tccctcttccctccagcacct 24579
to top
>gb|BC048694.1| Mus musculus protein tyrosine phosphatase, receptor type, U, mRNA
            (cDNA clone IMAGE:6392970), complete cds
          Length = 1544

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  acttcagctccctcttccct 281
            ||||||||||||||||||||
Sbjct: 1093 acttcagctccctcttccct 1112
to top
>gb|AC121926.3| Mus musculus BAC clone RP24-202B3 from chromosome 10, complete sequence
          Length = 185398

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    tttgaaaaaagacctctttt 412
              ||||||||||||||||||||
Sbjct: 156129 tttgaaaaaagacctctttt 156148
to top
>emb|AL359392.9| Human DNA sequence from clone RP11-332E3 on chromosome 13 Contains the
             3' end of the LMO7 gene for LIM domain only 7(KIAA0858)
             and a novel gene, complete sequence
          Length = 150488

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 484   tccattgctggcttgggctg 503
             ||||||||||||||||||||
Sbjct: 38600 tccattgctggcttgggctg 38619
to top
>gb|AC111678.6| Rattus norvegicus 18 BAC CH230-60A14 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 146568

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    agctccctcttccctccagc 286
              ||||||||||||||||||||
Sbjct: 114098 agctccctcttccctccagc 114117
to top
>emb|CR628362.8| Zebrafish DNA sequence from clone DKEY-74A12 in linkage group 18,
              complete sequence
          Length = 200732

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tgtgcaattctttgaataaa 80
              ||||||||||||||||||||
Sbjct: 155777 tgtgcaattctttgaataaa 155758
to top
>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the
             5' end of a novel gene, three novel genes, the Slc6a4 gene
             for solute carrier family 6 (neurotransmitter transporter,
             serotonin) member 4, the Blmh gene for bleomycin hydrolase
             and three CpG islands, complete sequence
          Length = 229289

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   caagaggtttgctttgcagc 325
             ||||||||||||||||||||
Sbjct: 30309 caagaggtttgctttgcagc 30290
to top
>gb|AC114147.5| Rattus norvegicus  BAC CH230-144F3 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 214988

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   agctccctcttccctccagc 286
             ||||||||||||||||||||
Sbjct: 71816 agctccctcttccctccagc 71835
to top
>gb|AF356004.1| Cicer arietinum ADP-glucose pyrophosphorylase small subunit CagpS1
            mRNA, complete cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  aatggtggattttgcagttc 557
            ||||||||||||||||||||
Sbjct: 1257 aatggtggattttgcagttc 1238
to top
>gb|AF249915.1|AF249915 Perilla frutescens ADP-glucose pyrophosphorylase catalytic subunit
            mRNA, complete cds
          Length = 1877

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 538  aatggtggattttgcagttc 557
            ||||||||||||||||||||
Sbjct: 1330 aatggtggattttgcagttc 1311
to top
>gb|AC091619.3| Papio anubis clone RP41-139B7, complete sequence
          Length = 181302

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   cttccatccatcttcgaccgccca 134
             |||||| |||||||||||||||||
Sbjct: 80840 cttccaaccatcttcgaccgccca 80817
to top
>gb|AC137494.1| Homo sapiens chromosome 16 clone LA16c-491E3, complete sequence
          Length = 37190

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   acttcagctccctcttccct 281
             ||||||||||||||||||||
Sbjct: 35168 acttcagctccctcttccct 35187
to top
>gb|AC132936.9| Homo sapiens chromosome 11, clone RP13-569C6, complete sequence
          Length = 178778

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 519   aacctcagggcctccggtca 538
             ||||||||||||||||||||
Sbjct: 63295 aacctcagggcctccggtca 63314
to top
>dbj|AP006623.1| Homo sapiens genomic DNA, chromosome 11, clone:RP11-1391J07, complete
             sequence
          Length = 121103

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   aacctcagggcctccggtca 538
             ||||||||||||||||||||
Sbjct: 56570 aacctcagggcctccggtca 56551
to top
>gb|AC152922.5| Mus musculus BAC clone RP24-386D3 from 10, complete sequence
          Length = 191855

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 393   tttgaaaaaagacctctttt 412
             ||||||||||||||||||||
Sbjct: 88765 tttgaaaaaagacctctttt 88784
to top
>emb|CR387935.16| Zebrafish DNA sequence from clone CH211-212O1 in linkage group 18,
             complete sequence
          Length = 152685

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tgtgcaattctttgaataaa 80
             ||||||||||||||||||||
Sbjct: 44225 tgtgcaattctttgaataaa 44244
to top
>gb|AC147447.3| Gallus gallus BAC clone CH261-9P3 from chromosome unknown, complete
             sequence
          Length = 162933

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   agaacctctgctctgaaggcttaa 190
             ||||||||||||||||||| ||||
Sbjct: 77187 agaacctctgctctgaaggtttaa 77164
to top
>gb|AC122346.4| Mus musculus BAC clone RP23-368L6 from 13, complete sequence
          Length = 198130

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 475    agagaaatttccattgctgg 494
              ||||||||||||||||||||
Sbjct: 105560 agagaaatttccattgctgg 105541
to top
>gb|U41520.1|PIGCYP2 Sus scrofa 17-alpha-hydroxylase cytochrome P450 (CYP17) gene, exon
           2 and exon 3
          Length = 920

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 cagctccctcttccctccagcacc 289
           |||| |||||||||||||||||||
Sbjct: 331 cagccccctcttccctccagcacc 308
to top
>emb|AL670959.8| Mouse DNA sequence from clone RP23-94L5 on chromosome 4, complete
              sequence
          Length = 262388

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    acttcagctccctcttccct 281
              ||||||||||||||||||||
Sbjct: 177904 acttcagctccctcttccct 177885
to top
>emb|AL160233.3|CNS01RGX Human chromosome 14 DNA sequence BAC C-2373J19 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 139887

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   tttccattgctggcttgggc 501
             ||||||||||||||||||||
Sbjct: 65175 tttccattgctggcttgggc 65194
to top
>emb|AL606932.10| Mouse DNA sequence from clone RP23-247I20 on chromosome 4, complete
             sequence
          Length = 188633

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   ttctgcctaacctctgacag 359
             ||||||||||||||||||||
Sbjct: 84278 ttctgcctaacctctgacag 84259
to top
>dbj|D88187.1| Mus musculus mRNA for Ftp-1, complete cds
          Length = 5464

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  acttcagctccctcttccct 281
            ||||||||||||||||||||
Sbjct: 5038 acttcagctccctcttccct 5057


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,618,992
Number of Sequences: 3902068
Number of extensions: 4618992
Number of successful extensions: 81420
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81286
Number of HSP's gapped (non-prelim): 114
length of query: 591
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 568
effective length of database: 17,143,297,704
effective search space: 9737393095872
effective search space used: 9737393095872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top