ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd25b06 |
|---|---|
| Clone Library Name | barley_pub |
>XTH8_ORYSA (Q76BW5) Xyloglucan endotransglycosylase/hydrolase protein 8| precursor (EC 2.4.1.207) (End-xyloglucan transferase) (OsXTH8) (OsXRT5) Length = 290 Score = 47.8 bits (112), Expect = 8e-06 Identities = 23/33 (69%), Positives = 30/33 (90%), Gaps = 1/33 (3%) Frame = +1 Query: 118 GFYDQFDVVGSGNNVR-VNDDGIAQQVALTLDQ 213 GFY++FDVVG+G++VR V+DDG QQVALTLD+ Sbjct: 27 GFYEKFDVVGAGDHVRVVSDDGKTQQVALTLDR 59
>PSAA_NEPOL (Q9TKW2) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 751 Score = 30.0 bits (66), Expect = 1.7 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL PTT+ W Sbjct: 29 WAKPGHFSRTLAKGPTTTTW 48
>PSAA_CHLVU (P56341) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 751 Score = 29.6 bits (65), Expect = 2.2 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL PTT+ W Sbjct: 29 WAKPGHFSRTLSKGPTTTTW 48
>PSAA_CYAPA (P48112) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 752 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 206 SVSATCWAMPSSFTRTLLPEPTTSNW 129 S S WA+P F+RTL P T+ W Sbjct: 23 STSFDKWAVPGHFSRTLAKGPKTTTW 48
>PSAA_HUPSQ (Q9MUJ1) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) (Fragment) Length = 715 Score = 28.9 bits (63), Expect = 3.8 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P+T+ W Sbjct: 16 WAQPGHFSRTLAKGPSTTTW 35
>PSAA_CHAGL (Q8M9W0) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 748 Score = 28.9 bits (63), Expect = 3.8 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P+T+ W Sbjct: 26 WAQPGHFSRTLAKGPSTTTW 45
>PSAA_HUPLU (Q5SD06) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 28.9 bits (63), Expect = 3.8 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P+T+ W Sbjct: 26 WAQPGHFSRTLAKGPSTTTW 45
>PSAA_PSINU (Q9MUJ2) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 28.5 bits (62), Expect = 5.0 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 26 WAQPGHFSRTLAKGPNTTTW 45
>PSAA_MARPO (P06406) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 28.5 bits (62), Expect = 5.0 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P+T+ W Sbjct: 26 WAKPGHFSRTLAKGPSTTTW 45
>PSAA_ANTFO (Q85B27) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 28.5 bits (62), Expect = 5.0 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P+T+ W Sbjct: 26 WAKPGHFSRTLAKGPSTTTW 45
>PSAA_GINBI (Q9MUC0) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) (Fragment) Length = 721 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 17 WAKPGHFSRTLAKGPNTTTW 36
>PSAA_ENCLE (Q9MUK4) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) (Fragment) Length = 719 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 15 WAKPGHFSRTLAKGPNTTTW 34
>PSAA_ANGEV (Q9MUJ5) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) (Fragment) Length = 721 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 17 WAKPGHFSRTLAKGPNTTTW 36
>PSAA_PHYPA (Q8MFA3) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 26 WAKPGHFSRTLAKGPNTTTW 45
>PSAA_PORPU (P51284) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 752 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 29 WAQPGHFSRTLAKGPKTTTW 48
>PSAA_ODOSI (P49479) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 752 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 29 WAQPGHFSRTLAKGPKTTTW 48
>PSAA_PINTH (P41639) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 753 Score = 27.7 bits (60), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 29 WAKPGHFSRTLAKGPDTTTW 48
>PSAA_CHLRE (P12154) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 751 Score = 27.7 bits (60), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 29 WAKPGHFSRTLSKGPNTTTW 48
>PSAA_WHEAT (P58311) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 27.7 bits (60), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 26 WARPGHFSRTLAKGPDTTTW 45
>PSAA_PANGI (Q68S06) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 27.7 bits (60), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 26 WARPGHFSRTLAKGPDTTTW 45
>PSAA_ORYSA (P12155) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 750 Score = 27.7 bits (60), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 26 WARPGHFSRTLAKGPDTTTW 45
>PSAA_GRATL (Q6B8U6) Photosystem I P700 chlorophyll a apoprotein A1 (PsaA)| (PSI-A) Length = 752 Score = 27.7 bits (60), Expect = 8.5 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = -3 Query: 188 WAMPSSFTRTLLPEPTTSNW 129 WA P F+RTL P T+ W Sbjct: 29 WAKPGHFSRTLAKGPKTTTW 48 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,596,703 Number of Sequences: 219361 Number of extensions: 157654 Number of successful extensions: 486 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 482 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 485 length of database: 80,573,946 effective HSP length: 47 effective length of database: 70,263,979 effective search space used: 1686335496 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
