ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd25b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransgly... 416 e-113
2gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase ... 319 2e-84
3gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase ... 303 1e-79
4gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase ... 285 3e-74
5gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 46 0.045
6gb|AY658006.1| Synthetic construct Peudomonas aeruginosa clone F... 44 0.18
7gb|AC087722.2| Rattus norvegicus strain Brown Norway clone RP31-... 44 0.18
8dbj|AB207102.1| Acidovorax avenae subsp. avenae Hrp gene cluster... 44 0.18
9gb|AE004494.1| Pseudomonas aeruginosa PAO1, section 55 of 529 of... 44 0.18
10gb|AY898625.1| Acidovorax avenae subsp. citrulli lytic murein tr... 44 0.18
11dbj|AB053454.1| Acidovorax avenae subsp. avenae gene for putativ... 44 0.18
12gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epox... 42 0.70
13gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 0.70
14emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 42 0.70
15emb|AL161740.16| Human DNA sequence from clone RP6-239D12 on chr... 42 0.70
16gb|AC104610.13| Drosophila melanogaster 3L BAC RP98-35J16 (Roswe... 42 0.70
17ref|NM_167121.1| Drosophila melanogaster CG9650-RC, transcript v... 42 0.70
18ref|NM_132157.1| Drosophila melanogaster CG9650-RB, transcript v... 42 0.70
19dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.70
20gb|AE003440.3| Drosophila melanogaster chromosome X, section 24 ... 42 0.70
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.70
22emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb... 42 0.70
23emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb... 42 0.70
24ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 2.8
25ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.8
26ref|XM_474213.1| Oryza sativa (japonica cultivar-group), predic... 40 2.8
27gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 2.8
28gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 2.8
29gb|AY815660.1| Schistosoma japonicum SJCHGC09350 protein mRNA, c... 40 2.8
30ref|XM_822249.1| Trypanosoma brucei TREU927 3-demethylubiquinone... 40 2.8
31gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 2.8
32emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on ch... 40 2.8
33emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 2.8
34emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4,... 40 2.8
35gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 2.8
36gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 2.8
37gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 2.8
38dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
40gb|AC104938.7| Homo sapiens chromosome 15, clone CTD-2524L6, com... 40 2.8
41dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mR... 40 2.8
42dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 2.8
43dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 2.8
44dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.8
45dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
46dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.8
47gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 2.8 
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (PM5)
          Length = 1188

 Score =  416 bits (210), Expect = e-113
 Identities = 215/217 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggtacagaggaggcaagcntaggagcaacgtgcgagttgccggcatggcgaggccgtcc 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 17  cggtacagaggaggcaagcagaggagcaacgtgcgagttgccggcatggcgaggccgtcc 76

                                                                       
Query: 61  ttctccctccacctgtgcctggccgttctggccttggccgccgccgcgtcggaggccggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  ttctccctccacctgtgcctggccgttctggccttggccgccgccgcgtcggaggccggg 136

                                                                       
Query: 121 ttctacgaccagttcgacgtggtcggctccggcaacaacgtccgcgtgaacgacgacggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ttctacgaccagttcgacgtggtcggctccggcaacaacgtccgcgtgaacgacgacggc 196

                                                
Query: 181 atcgcccagcaggtggcgctcacgctcgaccagggca 217
           |||||||||||||||||||||||||||||||||||||
Sbjct: 197 atcgcccagcaggtggcgctcacgctcgaccagggca 233
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>gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase XTH1 mRNA,
           complete cds
          Length = 958

 Score =  319 bits (161), Expect = 2e-84
 Identities = 203/217 (93%), Gaps = 4/217 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggtacagaggaggcaagcntaggagcaacgtgcg----agttgccggcatggcgaggcc 56
           |||||||||||||||||||  ||||||||||||||    || ||||||||||||||||||
Sbjct: 2   cggtacagaggaggcaagcagaggagcaacgtgcgcacgagctgccggcatggcgaggcc 61

                                                                       
Query: 57  gtccttctccctccacctgtgcctggccgttctggccttggccgccgccgcgtcggaggc 116
           |||| ||||||||||||||||||||||||| |||||| |||||||||||||||| |||||
Sbjct: 62  gtccctctccctccacctgtgcctggccgtcctggccatggccgccgccgcgtccgaggc 121

                                                                       
Query: 117 cgggttctacgaccagttcgacgtggtcggctccggcaacaacgtccgcgtgaacgacga 176
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 122 cgggttctacgaccagttcgacgtggtcggctccggcaacaacgtgcgcgtgaacgacga 181

                                                
Query: 177 cggcatcgcccagcaggtggcgctcacgctcgaccag 213
           |||| | ||||||||||||||||||||||||||||||
Sbjct: 182 cggcctggcccagcaggtggcgctcacgctcgaccag 218
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>gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase XTH2 mRNA,
           complete cds
          Length = 1107

 Score =  303 bits (153), Expect = 1e-79
 Identities = 204/221 (92%), Gaps = 4/221 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cggtacagaggaggcaagcntaggagcaacgtgcg----agttgccggcatggcgaggcc 56
           |||||||||||||||||||  ||||||| ||||||    || ||||||||||||||||||
Sbjct: 2   cggtacagaggaggcaagcagaggagcaccgtgcgcacgagctgccggcatggcgaggcc 61

                                                                       
Query: 57  gtccttctccctccacctgtgcctggccgttctggccttggccgccgccgcgtcggaggc 116
           |||| ||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||
Sbjct: 62  gtccctctccctccacctctgcctggccgtcctggccctggccgccgccgcgtccgaggc 121

                                                                       
Query: 117 cgggttctacgaccagttcgacgtggtcggctccggcaacaacgtccgcgtgaacgacga 176
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 122 cgggttctacgaccagttcgacgtggtcggctccggcagcaacgtgcgcgtgaacgacga 181

                                                    
Query: 177 cggcatcgcccagcaggtggcgctcacgctcgaccagggca 217
           |||| | ||||||||||||||||||||||||||||||||||
Sbjct: 182 cggcctggcccagcaggtggcgctcacgctcgaccagggca 222
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>gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase XTH3 mRNA,
           complete cds
          Length = 938

 Score =  285 bits (144), Expect = 3e-74
 Identities = 174/184 (94%)
 Strand = Plus / Plus

                                                                       
Query: 34  cgagttgccggcatggcgaggccgtccttctccctccacctgtgcctggccgttctggcc 93
           |||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct: 38  cgagctgccggcatggcgaggccgtccatctccctccacctctgcctggccgtcctggcc 97

                                                                       
Query: 94  ttggccgccgccgcgtcggaggccgggttctacgaccagttcgacgtggtcggctccggc 153
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98  atggccgccgccgcgtccgaggccgggttctacgaccagttcgacgtggtcggctccggc 157

                                                                       
Query: 154 aacaacgtccgcgtgaacgacgacggcatcgcccagcaggtggcgctcacgctcgaccag 213
           |||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct: 158 aacaacgtgcgcgtgaacgacgatggcctggcccagcaggtggcgctcacgctcgaccag 217

               
Query: 214 ggca 217
           ||||
Sbjct: 218 ggca 221
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 46.1 bits (23), Expect = 0.045
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 95      tggccgccgccgcgtcggaggcc 117
               |||||||||||||||||||||||
Sbjct: 1212479 tggccgccgccgcgtcggaggcc 1212501
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>gb|AY658006.1| Synthetic construct Peudomonas aeruginosa clone FLH046486.01F
           PA0583 gene, partial cds
          Length = 543

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 189 gcaggtggcgctcacgctcgac 210
           ||||||||||||||||||||||
Sbjct: 61  gcaggtggcgctcacgctcgac 40
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>gb|AC087722.2| Rattus norvegicus strain Brown Norway clone RP31-198L13, complete
             sequence
          Length = 150936

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 186   ccagcaggtggcgctcacgctc 207
             ||||||||||||||||||||||
Sbjct: 88236 ccagcaggtggcgctcacgctc 88215
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>dbj|AB207102.1| Acidovorax avenae subsp. avenae Hrp gene cluster, complete cds, strain:
             N1141
          Length = 66987

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 179   gcatcgcccagcaggtggcgct 200
             ||||||||||||||||||||||
Sbjct: 33525 gcatcgcccagcaggtggcgct 33504
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>gb|AE004494.1| Pseudomonas aeruginosa PAO1, section 55 of 529 of the complete genome
          Length = 12422

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 189  gcaggtggcgctcacgctcgac 210
            ||||||||||||||||||||||
Sbjct: 7190 gcaggtggcgctcacgctcgac 7169
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>gb|AY898625.1| Acidovorax avenae subsp. citrulli lytic murein transglycosylase,
             SAM-dependent methyltransferase, HrcC, HrpD5, HrpB1,
             HrpB2, HrcJ, HrpB4, HrpF, HrcN, hypothetical protein,
             GALA, HrcT, HrcU, HrcV, HpaP, HrcQ, HrcR, HrcS, HpaA,
             HpaB, HrpG, HrpX, and chorismate mutase genes, complete
             cds; anthranilate para-aminobenzoate synthase component I
             gene, partial cds; and unknown genes
          Length = 36584

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 179   gcatcgcccagcaggtggcgct 200
             ||||||||||||||||||||||
Sbjct: 28201 gcatcgcccagcaggtggcgct 28180
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>dbj|AB053454.1| Acidovorax avenae subsp. avenae gene for putative HrpN and HrpO,
            partial and complete cds
          Length = 3177

 Score = 44.1 bits (22), Expect = 0.18
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 179  gcatcgcccagcaggtggcgct 200
            ||||||||||||||||||||||
Sbjct: 2888 gcatcgcccagcaggtggcgct 2867
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>gb|AY838901.1| Oryza sativa (japonica cultivar-group) 9-cis-epoxycarotenoid
           dioxygenase 5 (NCED5) mRNA, complete cds
          Length = 2041

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 91  gccttggccgccgccgcgtcg 111
           |||||||||||||||||||||
Sbjct: 334 gccttggccgccgccgcgtcg 314
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 82      gccgttctggccttggccgccgccg 106
               |||||||||||| ||||||||||||
Sbjct: 3701587 gccgttctggccgtggccgccgccg 3701563
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 81      ggccgttctggccttggccgc 101
               |||||||||||||||||||||
Sbjct: 4668245 ggccgttctggccttggccgc 4668265
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>emb|AL161740.16| Human DNA sequence from clone RP6-239D12 on chromosome 1p32.1-33
             Contains 3' end of the DAB1 gene for disabled homolog 1
             (Drosophila), a novel gene and the 5' end of a novel gene,
             complete sequence
          Length = 60856

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    tccttctccctccacctgtgc 78
             |||||||||||||||||||||
Sbjct: 15312 tccttctccctccacctgtgc 15332
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>gb|AC104610.13| Drosophila melanogaster 3L BAC RP98-35J16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 138534

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    tctggccttggccgccgccgc 107
             |||||||||||||||||||||
Sbjct: 34401 tctggccttggccgccgccgc 34421
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>ref|NM_167121.1| Drosophila melanogaster CG9650-RC, transcript variant C (CG9650),
           mRNA
          Length = 3416

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tctggccttggccgccgccgc 107
           |||||||||||||||||||||
Sbjct: 210 tctggccttggccgccgccgc 230
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>ref|NM_132157.1| Drosophila melanogaster CG9650-RB, transcript variant B (CG9650),
           mRNA
          Length = 3458

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 87  tctggccttggccgccgccgc 107
           |||||||||||||||||||||
Sbjct: 252 tctggccttggccgccgccgc 272
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 91       gccttggccgccgccgcgtcg 111
                |||||||||||||||||||||
Sbjct: 26302119 gccttggccgccgccgcgtcg 26302099
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>gb|AE003440.3| Drosophila melanogaster chromosome X, section 24 of 74 of the complete
             sequence
          Length = 342195

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    tctggccttggccgccgccgc 107
             |||||||||||||||||||||
Sbjct: 65788 tctggccttggccgccgccgc 65808
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 91       gccttggccgccgccgcgtcg 111
                |||||||||||||||||||||
Sbjct: 26230295 gccttggccgccgccgcgtcg 26230275
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>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 133978

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    gccttggccgccgccgcgtcg 111
             |||||||||||||||||||||
Sbjct: 66103 gccttggccgccgccgcgtcg 66083
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>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 131689

 Score = 42.1 bits (21), Expect = 0.70
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 91    gccttggccgccgccgcgtcg 111
             |||||||||||||||||||||
Sbjct: 16398 gccttggccgccgccgcgtcg 16378
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>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA
          Length = 1127

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 118 gggttctacgaccagttcgacgtggtcggctccggc 153
           |||||||||||  ||||||||||||| ||| |||||
Sbjct: 122 gggttctacgagaagttcgacgtggtgggcgccggc 157
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>ref|XM_480868.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1111

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 118 gggttctacgaccagttcgacgtggtcggctccggc 153
           |||||||||||  ||||||||||||| ||| |||||
Sbjct: 127 gggttctacgagaagttcgacgtggtgggcgccggc 162
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>ref|XM_474213.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 468

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 134 tcgacgtggtcggctccggc 153
           ||||||||||||||||||||
Sbjct: 373 tcgacgtggtcggctccggc 392
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 170     acgacgacggcatcgcccag 189
               ||||||||||||||||||||
Sbjct: 2190896 acgacgacggcatcgcccag 2190877
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 190     caggtggcgctcacgctcga 209
               ||||||||||||||||||||
Sbjct: 5497207 caggtggcgctcacgctcga 5497226
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>gb|AY815660.1| Schistosoma japonicum SJCHGC09350 protein mRNA, complete cds
          Length = 1120

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  ggccgccgccgcgtcggagg 115
           ||||||||||||||||||||
Sbjct: 491 ggccgccgccgcgtcggagg 472
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>ref|XM_822249.1| Trypanosoma brucei TREU927 3-demethylubiquinone-9
           3-methyltransferase (Tb09.211.1960) partial mRNA
          Length = 867

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  gccgtccttctccctccacc 73
           ||||||||||||||||||||
Sbjct: 412 gccgtccttctccctccacc 393
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 84      cgttctggccttggccgccgccgcgtcg 111
               |||||| ||| |||||||||||||||||
Sbjct: 1768255 cgttctcgccgtggccgccgccgcgtcg 1768228
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>emb|AL137857.29| Human DNA sequence from clone RP5-1166H10 on chromosome 1p33-35.1
             Contains the MATN1 gene for matrilin 1 cartilage matrix
             protein, a novel gene (FLJ46197, FLJ33163), the 3' end of
             the gene for Lysosomal-associated multispanning membrane
             protein-5 (LAPTM5) and a CpG island, complete sequence
          Length = 152042

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    ctccctccacctgtgcctgg 82
             ||||||||||||||||||||
Sbjct: 56307 ctccctccacctgtgcctgg 56326
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    acgacgacggcatcgcccag 189
              ||||||||||||||||||||
Sbjct: 352595 acgacgacggcatcgcccag 352576
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>emb|AL606608.3|OSJN00056 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0015K02,
              complete sequence
          Length = 153623

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    tcgacgtggtcggctccggc 153
              ||||||||||||||||||||
Sbjct: 117936 tcgacgtggtcggctccggc 117917
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 78      cctggccgttctggccttggccgc 101
               |||||||||||||||||| |||||
Sbjct: 1290834 cctggccgttctggccttcgccgc 1290857
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 93      cttggccgccgccgcgtcgg 112
               ||||||||||||||||||||
Sbjct: 4044633 cttggccgccgccgcgtcgg 4044652
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     acgacgacggcatcgcccag 189
               ||||||||||||||||||||
Sbjct: 1635755 acgacgacggcatcgcccag 1635774
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 134      tcgacgtggtcggctccggc 153
                ||||||||||||||||||||
Sbjct: 33767493 tcgacgtggtcggctccggc 33767474
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 118     gggttctacgaccagttcgacgtggtcggctccggc 153
               |||||||||||  ||||||||||||| ||| |||||
Sbjct: 8321795 gggttctacgagaagttcgacgtggtgggcgccggc 8321830
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>gb|AC104938.7| Homo sapiens chromosome 15, clone CTD-2524L6, complete sequence
          Length = 157267

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    cttctccctccacctgtgcc 79
             ||||||||||||||||||||
Sbjct: 65427 cttctccctccacctgtgcc 65446
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>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan
           endotransglycosylase-related protein 5, complete cds
          Length = 1280

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 118 gggttctacgaccagttcgacgtggtcggctccggc 153
           |||||||||||  ||||||||||||| ||| |||||
Sbjct: 118 gggttctacgagaagttcgacgtggtgggcgccggc 153
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 170     acgacgacggcatcgcccagcagg 193
               |||||||||||||||||| |||||
Sbjct: 5364241 acgacgacggcatcgccctgcagg 5364264
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 174     cgacggcatcgcccagcagg 193
               ||||||||||||||||||||
Sbjct: 3861429 cgacggcatcgcccagcagg 3861410



 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      gccgccgccgcgtcggaggc 116
               ||||||||||||||||||||
Sbjct: 1356992 gccgccgccgcgtcggaggc 1357011
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>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0682A06
          Length = 142023

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 118   gggttctacgaccagttcgacgtggtcggctccggc 153
             |||||||||||  ||||||||||||| ||| |||||
Sbjct: 61904 gggttctacgagaagttcgacgtggtgggcgccggc 61939
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>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full
           insert sequence
          Length = 1111

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 118 gggttctacgaccagttcgacgtggtcggctccggc 153
           |||||||||||  ||||||||||||| ||| |||||
Sbjct: 127 gggttctacgagaagttcgacgtggtgggcgccggc 162
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>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full
           insert sequence
          Length = 1127

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 118 gggttctacgaccagttcgacgtggtcggctccggc 153
           |||||||||||  ||||||||||||| ||| |||||
Sbjct: 122 gggttctacgagaagttcgacgtggtgggcgccggc 157
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     acgacgacggcatcgcccag 189
               ||||||||||||||||||||
Sbjct: 2623011 acgacgacggcatcgcccag 2623030


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,669,894
Number of Sequences: 3902068
Number of extensions: 1669894
Number of successful extensions: 129274
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125820
Number of HSP's gapped (non-prelim): 3452
length of query: 217
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 195
effective length of database: 17,147,199,772
effective search space: 3343703955540
effective search space used: 3343703955540
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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